| HOME | HELP | FEEDBACK | SUBSCRIPTIONS | ARCHIVE | SEARCH | TABLE OF CONTENTS |
|
|
|
|||||||
|
|||||||||
Lehrstuhl für Mikrobiologie, Technische Universität München, D-80290 München, Germany
Laboratorium voor Microbiologie, Universiteit Gent, Belgium
3Author for correspondence: Werner Manz. Tel: +49 30 314 25831. Fax: +49 30 314 73461. e-mail: manz0654@mailszrz.zrz.tu-berlin.de
ABSTRACT
We designed a panel of four 16S rRNA-targeted oligonucleotide probes specific for bacteria of the phylum cytophaga-flavobacter-bacteroides (CFB). Probes CF319a and CF319b are targeted to members of the flavobacteria-cytophaga group and the genus Porphyromonas, whereas probe BAC303 has a target region characteristic for the genera Prevotella and Bacteroides within the bacteroides group. The probe FFE8b was developed for species-specific hybridizations with Flavobacterium ferrugineum. All probes were designed by computer-assisted sequence analysis and compared to all currently accessible 16S and 23S rRNA sequences. The oligonucleotides were further evaluated by whole-cell and non-radioactive dot-blot hybridization against reference strains of the CFB phylum and other major lineages of Bacteria. The newly developed probes were used together with other higher-order probes to analyse the structure and community composition in complex environments. In activated sludge samples, members of the flavobacteria-cytophaga group were revealed by in situ hybridization as important constituents of sludge flocs and characteristic colonizers of filamentous bacteria. By application of fluorescent probe BAC303, members of the genera Bacteroides and Prevotella could be visualized without prior cultivation as an important part of the human faecal microflora.
Present address: Fachgebiet ökologie der Mikroorganismen, Technische Universität Berlin, D-10587 Berlin, Germany.
This article has been cited by other articles:
|
|
 |
|
  A. L. Santos, C. Mendes, N. C. M. Gomes, I. Henriques, A. Correia, A. Almeida, and A. Cunha Short-term variability of abundance, diversity and activity of estuarine bacterioneuston and bacterioplankton J. Plankton Res., December 1, 2009; 31(12): 1545 - 1555. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 T. R. A. Straza, M. T. Cottrell, H. W. Ducklow, and D. L. Kirchman Geographic and Phylogenetic Variation in Bacterial Biovolume as Revealed by Protein and Nucleic Acid Staining Appl. Envir. Microbiol., June 15, 2009; 75(12): 4028 - 4034. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. E. Morales and W. E. Holben Empirical Testing of 16S rRNA Gene PCR Primer Pairs Reveals Variance in Target Specificity and Efficacy Not Suggested by In Silico Analysis Appl. Envir. Microbiol., May 1, 2009; 75(9): 2677 - 2683. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. Speirs, T. Nittami, S. McIlroy, S. Schroeder, and R. J. Seviour Filamentous Bacterium Eikelboom Type 0092 in Activated Sludge Plants in Australia Is a Member of the Phylum Chloroflexi Appl. Envir. Microbiol., April 15, 2009; 75(8): 2446 - 2452. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 K. Whelan, P. A Judd, K. M Tuohy, G. R Gibson, V. R Preedy, and M. A Taylor Fecal microbiota in patients receiving enteral feeding are highly variable and may be altered in those who develop diarrhea Am. J. Clinical Nutrition, January 1, 2009; 89(1): 240 - 247. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Vulevic, A. Drakoularakou, P. Yaqoob, G. Tzortzis, and G. R Gibson Modulation of the fecal microflora profile and immune function by a novel trans-galactooligosaccharide mixture (B-GOS) in healthy elderly volunteers Am. J. Clinical Nutrition, November 1, 2008; 88(5): 1438 - 1446. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. Mandalari, C. Nueno-Palop, G. Bisignano, M. S. J. Wickham, and A. Narbad Potential Prebiotic Properties of Almond (Amygdalus communis L.) Seeds Appl. Envir. Microbiol., July 15, 2008; 74(14): 4264 - 4270. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Behrens, T. Losekann, J. Pett-Ridge, P. K. Weber, W.-O. Ng, B. S. Stevenson, I. D. Hutcheon, D. A. Relman, and A. M. Spormann Linking Microbial Phylogeny to Metabolic Activity at the Single-Cell Level by Using Enhanced Element Labeling-Catalyzed Reporter Deposition Fluorescence In Situ Hybridization (EL-FISH) and NanoSIMS Appl. Envir. Microbiol., May 15, 2008; 74(10): 3143 - 3150. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P.-Y. Hong, J.-H. Wu, and W.-T. Liu Relative Abundance of Bacteroides spp. in Stools and Wastewaters as Determined by Hierarchical Oligonucleotide Primer Extension Appl. Envir. Microbiol., May 1, 2008; 74(9): 2882 - 2893. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. Palacios and I. Marin Enzymatic Permeabilization of the Thecate Dinoflagellate Alexandrium minutum (Dinophyceae) Yields Detection of Intracellularly Associated Bacteria via Catalyzed Reporter Deposition-Fluorescence In Situ Hybridization Appl. Envir. Microbiol., April 1, 2008; 74(7): 2244 - 2247. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
F. Depeint, G. Tzortzis, J. Vulevic, K. I'Anson, and G. R Gibson Prebiotic evaluation of a novel galactooligosaccharide mixture produced by the enzymatic activity of Bifidobacterium bifidum NCIMB 41171, in healthy humans: a randomized, double-blind, crossover, placebo-controlled intervention study Am. J. Clinical Nutrition, March 1, 2008; 87(3): 785 - 791. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 C. Kragelund, C. Levantesi, A. Borger, K. Thelen, D. Eikelboom, V. Tandoi, Y. Kong, J. Krooneman, P. Larsen, T. R. Thomsen, et al. Identity, abundance and ecophysiology of filamentous bacteria belonging to the Bacteroidetes present in activated sludge plants Microbiology, March 1, 2008; 154(3): 886 - 894. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. Larsen, J. L. Nielsen, D. Otzen, and P. H. Nielsen Amyloid-Like Adhesins Produced by Floc-Forming and Filamentous Bacteria in Activated Sludge Appl. Envir. Microbiol., March 1, 2008; 74(5): 1517 - 1526. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 H.-L. Chen, H.-C. Cheng, W.-T. Wu, Y.-J. Liu, and S.-Y. Liu Supplementation of Konjac Glucomannan into a Low-Fiber Chinese Diet Promoted Bowel Movement and Improved Colonic Ecology in Constipated Adults: A Placebo-Controlled, Diet-Controlled Trial J. Am. Coll. Nutr., February 1, 2008; 27(1): 102 - 108. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Kong, Y. Xia, J. L. Nielsen, and P. H. Nielsen Structure and function of the microbial community in a full-scale enhanced biological phosphorus removal plant Microbiology, December 1, 2007; 153(12): 4061 - 4073. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. Hirayama, M. Sunamura, K. Takai, T. Nunoura, T. Noguchi, H. Oida, Y. Furushima, H. Yamamoto, T. Oomori, and K. Horikoshi Culture-Dependent and -Independent Characterization of Microbial Communities Associated with a Shallow Submarine Hydrothermal System Occurring within a Coral Reef off Taketomi Island, Japan Appl. Envir. Microbiol., December 1, 2007; 73(23): 7642 - 7656. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 I. Nadal, E. Donant, C. Ribes-Koninckx, M. Calabuig, and Y. Sanz Imbalance in the composition of the duodenal microbiota of children with coeliac disease J. Med. Microbiol., December 1, 2007; 56(12): 1669 - 1674. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Ahmed, G. T. Macfarlane, A. Fite, A. J. McBain, P. Gilbert, and S. Macfarlane Mucosa-Associated Bacterial Diversity in Relation to Human Terminal Ileum and Colonic Biopsy Samples Appl. Envir. Microbiol., November 15, 2007; 73(22): 7435 - 7442. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Belenguer, S. H. Duncan, G. Holtrop, S. E. Anderson, G. E. Lobley, and H. J. Flint Impact of pH on Lactate Formation and Utilization by Human Fecal Microbial Communities Appl. Envir. Microbiol., October 15, 2007; 73(20): 6526 - 6533. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. Woebken, B. M. Fuchs, M. M. M. Kuypers, and R. Amann Potential Interactions of Particle-Associated Anammox Bacteria with Bacterial and Archaeal Partners in the Namibian Upwelling System Appl. Envir. Microbiol., July 15, 2007; 73(14): 4648 - 4657. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. Alonso-Saez and J. M. Gasol Seasonal Variations in the Contributions of Different Bacterial Groups to the Uptake of Low-Molecular-Weight Compounds in Northwestern Mediterranean Coastal Waters Appl. Envir. Microbiol., June 1, 2007; 73(11): 3528 - 3535. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Podar, C. B. Abulencia, M. Walcher, D. Hutchison, K. Zengler, J. A. Garcia, T. Holland, D. Cotton, L. Hauser, and M. Keller Targeted Access to the Genomes of Low-Abundance Organisms in Complex Microbial Communities Appl. Envir. Microbiol., May 15, 2007; 73(10): 3205 - 3214. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Kikuchi and J. Graf Spatial and Temporal Population Dynamics of a Naturally Occurring Two-Species Microbial Community inside the Digestive Tract of the Medicinal Leech Appl. Envir. Microbiol., March 15, 2007; 73(6): 1984 - 1991. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. W. Rogers, T. B. Moorman, and S. K. Ong Fluorescent In Situ Hybridization and Micro-autoradiography Applied to Ecophysiology in Soil Soil Sci. Soc. Am. J., March 12, 2007; 71(2): 620 - 631. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 A. Swidsinski, V. Loening-Baucke, F. Theissig, H. Engelhardt, S. Bengmark, S. Koch, H. Lochs, and Y. Dorffel Comparative study of the intestinal mucus barrier in normal and inflamed colon Gut, March 1, 2007; 56(3): 343 - 350. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J.C. Lunn, G. Kuhnle, V. Mai, C. Frankenfeld, D.E.G. Shuker, R. C. Glen, J.M. Goodman, J.R.A. Pollock, and S.A. Bingham The effect of haem in red and processed meat on the endogenous formation of N-nitroso compounds in the upper gastrointestinal tract Carcinogenesis, March 1, 2007; 28(3): 685 - 690. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. Roberfroid Prebiotics: The Concept Revisited J. Nutr., March 1, 2007; 137(3): 830S - 837S. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 A Swidsinski, O Goktas, C Bessler, V Loening-Baucke, L P Hale, H Andree, M Weizenegger, M Holzl, H Scherer, and H Lochs Spatial organisation of microbiota in quiescent adenoiditis and tonsillitis J. Clin. Pathol., March 1, 2007; 60(3): 253 - 260. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Inoue, M. Nishimura, B. B. Nayak, and K. Kogure Separation of Marine Bacteria according to Buoyant Density by Use of the Density-Dependent Cell Sorting Method Appl. Envir. Microbiol., February 15, 2007; 73(4): 1049 - 1053. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. H. Duncan, A. Belenguer, G. Holtrop, A. M. Johnstone, H. J. Flint, and G. E. Lobley Reduced Dietary Intake of Carbohydrates by Obese Subjects Results in Decreased Concentrations of Butyrate and Butyrate-Producing Bacteria in Feces Appl. Envir. Microbiol., February 15, 2007; 73(4): 1073 - 1078. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. M. Heimesaat, S. Bereswill, A. Fischer, D. Fuchs, D. Struck, J. Niebergall, H.-K. Jahn, I. R. Dunay, A. Moter, D. M. Gescher, et al. Gram-Negative Bacteria Aggravate Murine Small Intestinal Th1-Type Immunopathology following Oral Infection with Toxoplasma gondii J. Immunol., December 15, 2006; 177(12): 8785 - 8795. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Dinoto, T. M. Marques, K. Sakamoto, S. Fukiya, J. Watanabe, S. Ito, and A. Yokota Population Dynamics of Bifidobacterium Species in Human Feces during Raffinose Administration Monitored by Fluorescence In Situ Hybridization-Flow Cytometry Appl. Envir. Microbiol., December 1, 2006; 72(12): 7739 - 7747. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. Sintes and G. J. Herndl Quantifying Substrate Uptake by Individual Cells of Marine Bacterioplankton by Catalyzed Reporter Deposition Fluorescence In Situ Hybridization Combined with Microautoradiography Appl. Envir. Microbiol., November 1, 2006; 72(11): 7022 - 7028. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 R. Mohan, C. Koebnick, J. Schildt, S. Schmidt, M. Mueller, M. Possner, M. Radke, and M. Blaut Effects of Bifidobacterium lactis Bb12 Supplementation on Intestinal Microbiota of Preterm Infants: a Double-Blind, Placebo-Controlled, Randomized Study J. Clin. Microbiol., November 1, 2006; 44(11): 4025 - 4031. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. Piccini, D. Conde, C. Alonso, R. Sommaruga, and J. Pernthaler Blooms of single bacterial species in a coastal lagoon of the southwestern atlantic ocean. Appl. Envir. Microbiol., October 1, 2006; 72(10): 6560 - 6568. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. Alonso-Saez, J. M. Gasol, T. Lefort, J. Hofer, and R. Sommaruga Effect of Natural Sunlight on Bacterial Activity and Differential Sensitivity of Natural Bacterioplankton Groups in Northwestern Mediterranean Coastal Waters Appl. Envir. Microbiol., September 1, 2006; 72(9): 5806 - 5813. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Macfarlane and G. T. Macfarlane Composition and Metabolic Activities of Bacterial Biofilms Colonizing Food Residues in the Human Gut Appl. Envir. Microbiol., September 1, 2006; 72(9): 6204 - 6211. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Q. L. Wu, G. Zwart, M. Schauer, M. P. Kamst-van Agterveld, and M. W. Hahn Bacterioplankton Community Composition along a Salinity Gradient of Sixteen High-Mountain Lakes Located on the Tibetan Plateau, China Appl. Envir. Microbiol., August 1, 2006; 72(8): 5478 - 5485. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. J. Green, E. Inbar, F. C. Michel Jr., Y. Hadar, and D. Minz Succession of Bacterial Communities during Early Plant Development: Transition from Seed to Root and Effect of Compost Amendment. Appl. Envir. Microbiol., June 1, 2006; 72(6): 3975 - 3983. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T Kuhbacher, S J Ott, U Helwig, T Mimura, F Rizzello, B Kleessen, P Gionchetti, M Blaut, M Campieri, U R Folsch, et al. Bacterial and fungal microbiota in relation to probiotic therapy (VSL#3) in pouchitis Gut, June 1, 2006; 55(6): 833 - 841. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Lucke, S. Miehlke, E. Jacobs, and M. Schuppler Prevalence of Bacteroides and Prevotella spp. in ulcerative colitis. J. Med. Microbiol., May 1, 2006; 55(Pt 5): 617 - 624. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
X. Lin, S. G. Wakeham, I. F. Putnam, Y. M. Astor, M. I. Scranton, A. Y. Chistoserdov, and G. T. Taylor Comparison of Vertical Distributions of Prokaryotic Assemblages in the Anoxic Cariaco Basin and Black Sea by Use of Fluorescence In Situ Hybridization Appl. Envir. Microbiol., April 1, 2006; 72(4): 2679 - 2690. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. D. Ainsworth, M. Fine, L. L. Blackall, and O. Hoegh-Guldberg Fluorescence In Situ Hybridization and Spectral Imaging of Coral-Associated Bacterial Communities Appl. Envir. Microbiol., April 1, 2006; 72(4): 3016 - 3020. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J O Lindsay, K Whelan, A J Stagg, P Gobin, H O Al-Hassi, N Rayment, M A Kamm, S C Knight, and A Forbes Clinical, microbiological, and immunological effects of fructo-oligosaccharide in patients with Crohn's disease Gut, March 1, 2006; 55(3): 348 - 355. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Mueller, K. Saunier, C. Hanisch, E. Norin, L. Alm, T. Midtvedt, A. Cresci, S. Silvi, C. Orpianesi, M. C. Verdenelli, et al. Differences in Fecal Microbiota in Different European Study Populations in Relation to Age, Gender, and Country: a Cross-Sectional Study Appl. Envir. Microbiol., February 1, 2006; 72(2): 1027 - 1033. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. T. Cottrell, A. Mannino, and D. L. Kirchman Aerobic Anoxygenic Phototrophic Bacteria in the Mid-Atlantic Bight and the North Pacific Gyre Appl. Envir. Microbiol., January 1, 2006; 72(1): 557 - 564. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. S. Yilmaz, H. E. Okten, and D. R. Noguera Making All Parts of the 16S rRNA of Escherichia coli Accessible In Situ to Single DNA Oligonucleotides Appl. Envir. Microbiol., January 1, 2006; 72(1): 733 - 744. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Dinoto, A. Suksomcheep, S. Ishizuka, H. Kimura, S. Hanada, Y. Kamagata, K. Asano, F. Tomita, and A. Yokota Modulation of Rat Cecal Microbiota by Administration of Raffinose and Encapsulated Bifidobacterium breve Appl. Envir. Microbiol., January 1, 2006; 72(1): 784 - 792. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 L. A. O'Sullivan, J. Rinna, G. Humphreys, A. J. Weightman, and J. C. Fry Culturable phylogenetic diversity of the phylum 'Bacteroidetes' from river epilithon and coastal water and description of novel members of the family Flavobacteriaceae: Epilithonimonas tenax gen. nov., sp. nov. and Persicivirga xylanidelens gen. nov., sp. nov. Int J Syst Evol Microbiol, January 1, 2006; 56(1): 169 - 180. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. Elifantz, R. R. Malmstrom, M. T. Cottrell, and D. L. Kirchman Assimilation of Polysaccharides and Glucose by Major Bacterial Groups in the Delaware Estuary Appl. Envir. Microbiol., December 1, 2005; 71(12): 7799 - 7805. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. Muyzer, E. Yildirim, U. van Dongen, M. Kuhl, and R. Thar Identification of "Candidatus Thioturbo danicus," a Microaerophilic Bacterium That Builds Conspicuous Veils on Sulfidic Sediments Appl. Envir. Microbiol., December 1, 2005; 71(12): 8929 - 8933. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. Clavel, M. Fallani, P. Lepage, F. Levenez, J. Mathey, V. Rochet, M. Serezat, M. Sutren, G. Henderson, C. Bennetau-Pelissero, et al. Isoflavones and Functional Foods Alter the Dominant Intestinal Microbiota in Postmenopausal Women J. Nutr., December 1, 2005; 135(12): 2786 - 2792. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. Yokokawa and T. Nagata Growth and Grazing Mortality Rates of Phylogenetic Groups of Bacterioplankton in Coastal Marine Environments Appl. Envir. Microbiol., November 1, 2005; 71(11): 6799 - 6807. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Macfarlane, E. J. Woodmansey, and G. T. Macfarlane Colonization of Mucin by Human Intestinal Bacteria and Establishment of Biofilm Communities in a Two-Stage Continuous Culture System Appl. Envir. Microbiol., November 1, 2005; 71(11): 7483 - 7492. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
F. Gich, K. Schubert, A. Bruns, H. Hoffelner, and J. Overmann Specific Detection, Isolation, and Characterization of Selected, Previously Uncultured Members of the Freshwater Bacterioplankton Community Appl. Envir. Microbiol., October 1, 2005; 71(10): 5908 - 5919. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. Clavel, G. Henderson, C.-A. Alpert, C. Philippe, L. Rigottier-Gois, J. Dore, and M. Blaut Intestinal Bacterial Communities That Produce Active Estrogen-Like Compounds Enterodiol and Enterolactone in Humans Appl. Envir. Microbiol., October 1, 2005; 71(10): 6077 - 6085. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. Kumaraswamy, U. van Dongen, J. G. Kuenen, W. Abma, M. C. M. van Loosdrecht, and G. Muyzer Characterization of Microbial Communities Removing Nitrogen Oxides from Flue Gas: the BioDeNOx Process Appl. Envir. Microbiol., October 1, 2005; 71(10): 6345 - 6352. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. P. van Tongeren, J. P. J. Slaets, H. J. M. Harmsen, and G. W. Welling Fecal Microbiota Composition and Frailty Appl. Envir. Microbiol., October 1, 2005; 71(10): 6438 - 6442. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Timke, N. Q. Wang-Lieu, K. Altendorf, and A. Lipski Community Structure and Diversity of Biofilms from a Beer Bottling Plant as Revealed Using 16S rRNA Gene Clone Libraries Appl. Envir. Microbiol., October 1, 2005; 71(10): 6446 - 6452. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. M. Parracho, M. O Bingham, G. R Gibson, and A. L McCartney Differences between the gut microflora of children with autistic spectrum disorders and that of healthy children J. Med. Microbiol., October 1, 2005; 54(10): 987 - 991. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. Kenzaka, A. Ishidoshiro, N. Yamaguchi, K. Tani, and M. Nasu rRNA Sequence-Based Scanning Electron Microscopic Detection of Bacteria Appl. Envir. Microbiol., September 1, 2005; 71(9): 5523 - 5531. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. W. Hahn, M. Pockl, and Q. L. Wu Low Intraspecific Diversity in a Polynucleobacter Subcluster Population Numerically Dominating Bacterioplankton of a Freshwater Pond Appl. Envir. Microbiol., August 1, 2005; 71(8): 4539 - 4547. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Whelan, P. A. Judd, V. R. Preedy, R. Simmering, A. Jann, and M. A. Taylor Fructooligosaccharides and Fiber Partially Prevent the Alterations in Fecal Microbiota and Short-Chain Fatty Acid Concentrations Caused by Standard Enteral Formula in Healthy Humans J. Nutr., August 1, 2005; 135(8): 1896 - 1902. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Loy, W. Beisker, and H. Meier Diversity of Bacteria Growing in Natural Mineral Water after Bottling Appl. Envir. Microbiol., July 1, 2005; 71(7): 3624 - 3632. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. W. Walker, S. H. Duncan, E. C. McWilliam Leitch, M. W. Child, and H. J. Flint pH and Peptide Supply Can Radically Alter Bacterial Populations and Short-Chain Fatty Acid Ratios within Microbial Communities from the Human Colon Appl. Envir. Microbiol., July 1, 2005; 71(7): 3692 - 3700. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Okabe, T. Kindaichi, and T. Ito Fate of 14C-Labeled Microbial Products Derived from Nitrifying Bacteria in Autotrophic Nitrifying Biofilms Appl. Envir. Microbiol., July 1, 2005; 71(7): 3987 - 3994. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
N. Fierer, J. A. Jackson, R. Vilgalys, and R. B. Jackson Assessment of Soil Microbial Community Structure by Use of Taxon-Specific Quantitative PCR Assays Appl. Envir. Microbiol., July 1, 2005; 71(7): 4117 - 4120. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Swidsinski, J. Weber, V. Loening-Baucke, L. P. Hale, and H. Lochs Spatial Organization and Composition of the Mucosal Flora in Patients with Inflammatory Bowel Disease J. Clin. Microbiol., July 1, 2005; 43(7): 3380 - 3389. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. Tzortzis, A. K. Goulas, J. M. Gee, and G. R. Gibson A Novel Galactooligosaccharide Mixture Increases the Bifidobacterial Population Numbers in a Continuous In Vitro Fermentation System and in the Proximal Colonic Contents of Pigs In Vivo J. Nutr., July 1, 2005; 135(7): 1726 - 1731. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Schauer and M. W. Hahn Diversity and Phylogenetic Affiliations of Morphologically Conspicuous Large Filamentous Bacteria Occurring in the Pelagic Zones of a Broad Spectrum of Freshwater Habitats Appl. Envir. Microbiol., April 1, 2005; 71(4): 1931 - 1940. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A Swidsinski, P Schlien, A Pernthaler, U Gottschalk, E Barlehner, G Decker, S Swidsinski, J Strassburg, V Loening-Baucke, U Hoffmann, et al. Bacterial biofilm within diseased pancreatic and biliary tracts Gut, March 1, 2005; 54(3): 388 - 395. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. C. Gillan, B. Danis, P. Pernet, G. Joly, and P. Dubois Structure of Sediment-Associated Microbial Communities along a Heavy-Metal Contamination Gradient in the Marine Environment Appl. Envir. Microbiol., February 1, 2005; 71(2): 679 - 690. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. L. Nielsen, A. Schramm, A. E. Bernhard, G. J. van den Engh, and D. A. Stahl Flow Cytometry-Assisted Cloning of Specific Sequence Motifs from Complex 16S rRNA Gene Libraries Appl. Envir. Microbiol., December 1, 2004; 70(12): 7550 - 7554. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M.-T. Wong, F. M. Tan, W. J. Ng, and W.-T. Liu Identification and occurrence of tetrad-forming Alphaproteobacteria in anaerobic-aerobic activated sludge processes Microbiology, November 1, 2004; 150(11): 3741 - 3748. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. Sekar, B. M. Fuchs, R. Amann, and J. Pernthaler Flow Sorting of Marine Bacterioplankton after Fluorescence In Situ Hybridization Appl. Envir. Microbiol., October 1, 2004; 70(10): 6210 - 6219. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Pernthaler, E. Zollner, F. Warnecke, and K. Jurgens Bloom of Filamentous Bacteria in a Mesotrophic Lake: Identity and Potential Controlling Mechanism Appl. Envir. Microbiol., October 1, 2004; 70(10): 6272 - 6281. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C.-L. Chen, H. Macarie, I. Ramirez, A. Olmos, S. L. Ong, O. Monroy, and W.-T. Liu Microbial community structure in a thermophilic anaerobic hybrid reactor degrading terephthalate Microbiology, October 1, 2004; 150(10): 3429 - 3440. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Vulevic, A. L. McCartney, J. M. Gee, I. T. Johnson, and G. R. Gibson Microbial Species Involved in Production of 1,2-sn-Diacylglycerol and Effects of Phosphatidylcholine on Human Fecal Microbiota Appl. Envir. Microbiol., September 1, 2004; 70(9): 5659 - 5666. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. M. Probert, J. H. A. Apajalahti, N. Rautonen, J. Stowell, and G. R. Gibson Polydextrose, Lactitol, and Fructo-Oligosaccharide Fermentation by Colonic Bacteria in a Three-Stage Continuous Culture System Appl. Envir. Microbiol., August 1, 2004; 70(8): 4505 - 4511. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
U. Stingl, A. Maass, R. Radek, and A. Brune Symbionts of the gut flagellate Staurojoenina sp. from Neotermes cubanus represent a novel, termite-associated lineage of Bacteroidales: description of 'Candidatus Vestibaculum illigatum' Microbiology, July 1, 2004; 150(7): 2229 - 2235. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. Schuppler, K. Lotzsch, M. Waidmann, and I. B. Autenrieth An Abundance of Escherichia coli Is Harbored by the Mucosa- Associated Bacterial Flora of Interleukin-2-Deficient Mice Infect. Immun., April 1, 2004; 72(4): 1983 - 1990. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A Fite, G T Macfarlane, J H Cummings, M J Hopkins, S C Kong, E Furrie, and S Macfarlane Identification and quantitation of mucosal and faecal desulfovibrios using real time polymerase chain reaction Gut, April 1, 2004; 53(4): 523 - 529. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. Kindaichi, T. Ito, and S. Okabe Ecophysiological Interaction between Nitrifying Bacteria and Heterotrophic Bacteria in Autotrophic Nitrifying Biofilms as Determined by Microautoradiography-Fluorescence In Situ Hybridization Appl. Envir. Microbiol., March 1, 2004; 70(3): 1641 - 1650. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Sunamura, Y. Higashi, C. Miyako, J.-i. Ishibashi, and A. Maruyama Two Bacteria Phylotypes Are Predominant in the Suiyo Seamount Hydrothermal Plume Appl. Envir. Microbiol., February 1, 2004; 70(2): 1190 - 1198. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
V. Mai, H. A. Katki, H. Harmsen, D. Gallaher, A. Schatzkin, D. J. Baer, and B. Clevidence Effects of a Controlled Diet and Black Tea Drinking on the Fecal Microflora Composition and the Fecal Bile Acid Profile of Human Volunteers in a Double-Blinded Randomized Feeding Study J. Nutr., February 1, 2004; 134(2): 473 - 478. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
F Hoentjen, H J M Harmsen, H Braat, C D Torrice, B A Mann, R B Sartor, and L A Dieleman Antibiotics with a selective aerobic or anaerobic spectrum have different therapeutic activities in various regions of the colon in interleukin 10 gene deficient mice Gut, December 1, 2003; 52(12): 1721 - 1727. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. Brinkmeyer, K. Knittel, J. Jurgens, H. Weyland, R. Amann, and E. Helmke Diversity and Structure of Bacterial Communities in Arctic versus Antarctic Pack Ice Appl. Envir. Microbiol., November 1, 2003; 69(11): 6610 - 6619. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
D. Schmitt-Wagner, M. W. Friedrich, B. Wagner, and A. Brune Phylogenetic Diversity, Abundance, and Axial Distribution of Bacteria in the Intestinal Tract of Two Soil-Feeding Termites (Cubitermes spp.) Appl. Envir. Microbiol., October 1, 2003; 69(10): 6007 - 6017. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. S. Engel, N. Lee, M. L. Porter, L. A. Stern, P. C. Bennett, and M. Wagner Filamentous "Epsilonproteobacteria" Dominate Microbial Mats from Sulfidic Cave Springs Appl. Envir. Microbiol., September 1, 2003; 69(9): 5503 - 5511. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Bertaux, M. Schmid, N. C. Prevost-Boure, J. L. Churin, A. Hartmann, J. Garbaye, and P. Frey-Klett In Situ Identification of Intracellular Bacteria Related to Paenibacillus spp. in the Mycelium of the Ectomycorrhizal Fungus Laccaria bicolor S238N Appl. Envir. Microbiol., July 1, 2003; 69(7): 4243 - 4248. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Peplies, F. O. Glockner, and R. Amann Optimization Strategies for DNA Microarray-Based Detection of Bacteria with 16S rRNA-Targeting Oligonucleotide Probes Appl. Envir. Microbiol., March 1, 2003; 69(3): 1397 - 1407. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. H. Duncan, K. P. Scott, A. G. Ramsay, H. J. M. Harmsen, G. W. Welling, C. S. Stewart, and H. J. Flint Effects of Alternative Dietary Substrates on Competition between Human Colonic Bacteria in an Anaerobic Fermentor System Appl. Envir. Microbiol., February 1, 2003; 69(2): 1136 - 1142. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. R. Crocetti, J. F. Banfield, J. Keller, P. L. Bond, and L. L. Blackall Glycogen-accumulating organisms in laboratory-scale and full-scale wastewater treatment processes Microbiology, November 1, 2002; 148(11): 3353 - 3364. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
N. H. Salzman, H. de Jong, Y. Paterson, H. J. M. Harmsen, G. W. Welling, and N. A. Bos Analysis of 16S libraries of mouse gastrointestinal microflora reveals a large new group of mouse intestinal bacteria Microbiology, November 1, 2002; 148(11): 3651 - 3660. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J.-P. Gattuso, S. Peduzzi, M.-D. Pizay, and M. Tonolla Changes in freshwater bacterial community composition during measurements of microbial and community respiration J. Plankton Res., November 1, 2002; 24(11): 1197 - 1206. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 K. E. Ashelford, A. J. Weightman, and J. C. Fry PRIMROSE: a computer program for generating and estimating the phylogenetic range of 16S rRNA oligonucleotide probes and primers in conjunction with the RDP-II database Nucleic Acids Res., August 1, 2002; 30(15): 3481 - 3489. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P V Kirjavainen, T Arvola, S J Salminen, and E Isolauri Aberrant composition of gut microbiota of allergic infants: a target of bifidobacterial therapy at weaning? Gut, July 1, 2002; 51(1): 51 - 55. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H. J. M. Harmsen, G. C. Raangs, T. He, J. E. Degener, and G. W. Welling Extensive Set of 16S rRNA-Based Probes for Detection of Bacteria in Human Feces Appl. Envir. Microbiol., June 1, 2002; 68(6): 2982 - 2990. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. O. Casamayor, C. Pedros-Alio, G. Muyzer, and R. Amann Microheterogeneity in 16S Ribosomal DNA-Defined Bacterial Populations from a Stratified Planktonic Environment Is Related to Temporal Changes and to Ecological Adaptations Appl. Envir. Microbiol., April 1, 2002; 68(4): 1706 - 1714. [Abstract] [Full Text] [PDF]
|
|
| HOME | HELP | FEEDBACK | SUBSCRIPTIONS | ARCHIVE | SEARCH | TABLE OF CONTENTS |
| INT J SYST EVOL MICROBIOL | MICROBIOLOGY | J GEN VIROL |
| J MED MICROBIOL | ALL SGM JOURNALS | |
