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Microbiology 154 (2008), 2872-2880; DOI  10.1099/mic.0.2008/020685-0
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Microbiology 154 (2008), 2872-2880; DOI  10.1099/mic.0.2008/020685-0
© 2008 Society for General Microbiology

Non-ribosomal peptide synthetase module fusions to produce derivatives of daptomycin in Streptomyces roseosporus

Sascha Doekel, Marie-Françoise Coëffet-Le Gal, Jian-Qiao Gu, Min Chu, Richard H. Baltz and Paul Brian

Cubist Pharmaceuticals Inc., 65 Hayden Avenue, Lexington, MA 02421, USA

Correspondence
Richard H. Baltz
rbaltz{at}cubist.com

Genetic engineering has been applied to reprogramme non-ribosomal peptide synthetases (NRPSs) to produce novel antibiotics, but little is known about what determines the efficiency of production. We explored module exchanges at nucleotide sequences encoding interpeptide linkers in dptD, a gene encoding a di-modular NRPS subunit that incorporates 3-methylglutamic acid (3mGlu12) and kynurenine (Kyn13) into daptomycin. Mutations causing amino acid substitutions, deletions or insertions in the inter-module linker had no negative effects on lipopeptide yields. Hybrid DptD subunits were generated by fusing the 3mGlu12 module to terminal modules from calcium-dependent antibiotic (CDA) or A54145 NRPSs, and recombinants produced daptomycin analogues with Trp13 or Ile13 at high efficiencies. A recombinant expressing DptD with a hybrid Kyn13 module containing a di-domain from a D-Asn module caused the production of a new daptomycin analogue containing Asn13.


Abbreviations: A, adenylation; C, condensation; CDA, calcium-dependent antibiotic; E, epimerization; ESI, electrospray ionization; D-hAsn, D-hydroxyasparagine; D-hPhg, D-hydroxyphenylglycine; HR-MS, high resolution mass spectrometry; Kyn, kynurenine; LC-MS, liquid chromatography-mass spectrometry; 3mGlu, 3-methylglutamic acid; mOAsp, methoxyaspartic acid; NRPS, non-ribosomal peptide synthetase; PCP, peptidyl carrier protein; Sar, sarcosine; T, thiolation; Te, thioesterase

A supplementary table of primers is available with the online version of this paper.







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