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Genetics and Molecular Biology |
Departments of Microbiology and Immunology1 and Medicine,2 The University of Western Ontario, London, Ontario, CanadaN6A 5C1
Author for correspondence: Miguel A. Valvano. Tel: +1 519 661 3996. Fax: +1 519 661 3499. e-mail: mvalvano{at}uwo.ca
| ABSTRACT |
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Keywords: undecaprenol, O antigen biosynthesis, membrane protein, transferase, tunicamycin
Abbreviations: GlcNAc, N-acetylglucosamine; Und-P, undecaprenyl phosphate
| INTRODUCTION |
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Comparisons of amino acid sequences among the members of the polyisoprenyl-phosphate N-acetylhexosamine-1-phosphate transferase family reveal an alternate clustering of hydrophobic and hydrophilic domains, suggesting the presence of multiple transmembrane regions. The topology of two members of this family, the bacterial protein MraY that is involved in peptidoglycan synthesis (Bouhss et al., 1999
) and the eukaryotic GPT that is involved in protein glycosylation (Dan et al., 1996
), has been characterized experimentally. Bacterial and eukaryotic proteins share discrete regions of conserved amino acid sequence, especially those located in hydrophilic segments of the protein that are exposed to the cytosolic face of the plasma membrane or the membrane of the endoplasmic reticulum (Bouhss et al., 1999
; Dal Nogare & Lehrman, 1988
). Bacterial homologues also carry a large cytosolic loop that shares very little similarity with the eukaryotic members of the family (Bouhss et al., 1999
; Dal Nogare & Lehrman, 1988
). It has recently been proposed that this large cytosolic region, ranging from approximately 32 to 43 aa in length, may be important for the recognition of the nucleotide-sugar substrates and may also determine the specificity of such an interaction (Anderson et al., 2000
). In a previous study, we have constructed a functional WecA derivative carrying a FLAG epitope tag, which was fused to the C-terminal end of the protein (Amer & Valvano, 2000
). Using the WecAFLAG construct, we have determined the role of aspartic acid residues located in two distinct regions within WecA, both of which are predicted to correspond to cytosolic-exposed segments of the protein (A. O. Amer & M. A. Valvano, unpublished). These residues may contribute to the formation of the phosphodiester bond and the interaction with divalent cations that is essential for catalytic activity (A. O. Amer & M. A. Valvano, unpublished). In this study, we have modelled the topology of WecA taking into account the available experimental data from the topological analysis of MraY (Bouhss et al., 1999
), and examined in detail the role of a conserved motif within the predicted large cytosolic loop.
| METHODS |
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and XL-1 Blue were used for all plasmid manipulations, and E. coli JT4000 was used for the expression of WecAMalFTM and WecAE320. Competent cells were prepared for transformation by either the calcium chloride method or electroporation as described elsewhere (Cohen et al., 1972
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Construction of the wecAMalFTM gene encoding a FLAG-tagged WecA protein with a swapped last transmembrane domain.
pAA12 (Amer & Valvano, 2000
) was first linearized by digestion with NheI, which cuts in the middle of the sequence encoding the last transmembrane domain of WecA. This fragment was used as a template for a PCR reaction with primers 185 (sense) and 186 (antisense). Primer 185 was designed to encode part of the fifth external loop region of the wecA gene followed by the sequence encoding the N-terminal half of the last transmembrane domain of the MalF protein (Boyd et al., 1987
). Primer 186 encoded part of the wecA gene C-terminal tail and the C-terminal half of the MalF last transmembrane domain with the introduction of a HincII site to facilitate the identification of the new construct. The PCR product was purified, self-ligated and transformed into E. coli DH5
, resulting in the isolation of pAA10. This plasmid contained a wecA gene encoding a WecA protein in which the last transmembrane domain was replaced by the last transmembrane segment of MalF (WecAMalFTM).
Oligonucleotide-directed mutagenesis of wecA.
The replacement of the HHIH279282 motif by four glycines was conducted in two steps. Primer 165, which anneals to the FLAG sequence, was used in reactions amplifying the C-terminal part of wecA, and primer 170, which contains an EcoRI cleavage site, was used in reactions amplifying the N-terminal portion of wecA. A 0·26 kb C-terminal fragment of wecA was first amplified by PCR using antisense primer 165 and sense primer 237, which contains the codons for two glycine residues to substitute His281 and His282. This fragment was ligated into the SmaI site of pBAD24. Then the N-terminal part of wecA was amplified using sense primer 170 and antisense primer 238, which contains the codons for the other two glycine residues replacing His279 and Ile280 of the HIHH motif. The amplified fragment was ligated into the previous construct after digesting it with EcoRI and SmaI, producing pAA33. This strategy resulted in the reconstruction of a full-length wecA gene tagged with the FLAG sequence and encoding four glycine codons in place of the parental HIHH codons.
Single His279 and Arg265 substitutions in the wecA gene were introduced by site-directed mutagenesis using QuikChange Site-Directed Mutagenesis Kit from Stratagene as recommended by the manufacturer. Plasmid pAA26 containing the wecA gene tagged with the FLAG sequence was used as a template in all reactions. Mutagenized plasmids were transformed into E. coli XL-1 Blue as recommended by the supplier. These experiments resulted in plasmids pAA51 (wecAH279S) and pAA52 (wecAR265K).
Transferase and binding assays.
Both pAA26 encoding the parental wecAFLAG gene and the other plasmids encoding the mutated wecA derivatives were transformed into strain MV501. Membranes were isolated as described by Osborn et al. (1972)
after induction of the cultures with 0·02% arabinose for 3 h. The reaction mixture for the transferase assay contained the membrane fraction (20 µg total protein) and 96 pmol radiolabelled UDP-N-acetyl-[14C]glucosamine (225 mCi mmol-1; Amersham Pharmacia Biotech) in 250 µl buffer (5 mM Tris-acetate, pH 8·5, 0·1 mM EDTA and 1 mM MgCl2). After 30 min incubation at 37 °C, the lipid-associated material was extracted twice with 250 µl 1-butanol. The combined 1-butanol extracts were washed once with 500 µl distilled water. The radioactive counts of the 1-butanol fraction were determined with a Beckman liquid scintillation counter. Radioactive counts were normalized and expressed as a percentage of parental WecAFLAG activity at 1 mM MgCl2 concentration (A. O. Amer & M. A. Valvano, unpublished). An indirect assay that specifically measures the biosynthesis of O7 antigen by assaying the transfer of radiolabelled galactose into Und-P-P-GlcNAc acceptor in the presence of unlabelled UDP-GlcNAc was also used to determine WecA activity. The O7 polysaccharide repeating subunit consists of a backbone of GlcNAc, galactose, mannose and N-acetylviosamine, and a side chain of rhamnose (LVov et al., 1984
). Since WecA mediates the formation of Und-P-P-GlcNAc, the incorporation of radioactive galactose is strictly dependent on the presence of UDP-GlcNAc. This assay was carried out in a similar manner as described above except that the reaction mixture contained 0·5 µCi UDP-[3H]galactose (Amersham) and 0·08 mmol UDP-GlcNAc.
Binding assays were performed as follows. Briefly, 40 µg membranes from MV501 cells transformed with plasmids encoding the various wecA mutants were incubated with 45 ng of the inhibitor tunicamycin for 10 min at room temperature. In previous experiments, we had determined that 45 ng tunicamycin was the minimal amount of inhibitor required to inhibit the enzymic activity of 20 µg membranes from MV501(pAA26) cells containing the parental WecA. The inhibitory activity of residual tunicamycin, which did not bind to the mutant proteins, was determined by adding 20 µg membranes prepared from MV501(pAA26) in the presence of UDP-N-acetyl-[14C]glucosamine. Samples were incubated for 30 min at 37 °C and processed with 1-butanol as described above for the transferase assay. Radioactive counts were expressed as a percentage of parental WecA activity assayed under the same conditions but in the absence of tunicamycin.
Immunoblot analysis.
The same membrane preparations used for transferase and binding assays were subjected to Western Blot analysis (Amer & Valvano, 2000
). Blots were developed using the FLAG M2 mAb as the primary antibody and horseradish peroxidase-linked sheep anti-mouse IgG (Amersham Pharmacia Biotechnology) as the secondary antibody. Detection by chemiluminescence was performed using the Chemiluminescence Blotting Substrate (Roche Diagnostics) as recommended by the manufacturer.
LPS analysis.
LPS was extracted and analysed by SDS-PAGE followed by silver staining as previously described (Marolda et al., 1990
).
Fractionation of membranes.
The location of WecA and its mutated derivatives in the plasma membrane was verified by sucrose gradient fractionation of total bacterial membranes (Amer & Valvano, 2000
). Fractions were collected and assayed for NADH oxidase activity (Osborn et al., 1972
) as a plasma membrane marker, and for the presence of outer membrane porins using SDS-PAGE to detect the outer membrane fractions (Amer & Valvano, 2000
). The presence of WecA in the fractions was examined by immunoblotting with the anti-FLAG mAb as described above.
Amino acid sequence alignment.
BLAST version 2 (Altschul et al., 1997
) was used for homology searches in the database of non-redundant sequence. Amino acid sequence alignments of WecA homologues were performed using CLUSTAL W (Thompson et al., 1994
). The transmembrane helices of WecA were predicted from the analysis of its amino acid sequence with TMHMM (Transmembrane Hidden Markov Model; Sonnhammer et al., 1998
).
| RESULTS AND DISCUSSION |
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/ß phosphodiesterase activity (Sekine et al., 2001
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Structural analysis of class I tRNA synthetases has revealed another short sequence motif, KMSK (Lys-Met-Ser-Lys), that is involved in the three-dimensional architecture of the ATP-binding site (Sekine et al., 2001
). It was suggested that the second lysine of the KMSK motif plays a key role in catalysis, as it interacts with the
-phosphate of the ATP molecule by forming a salt bridge with the phosphate group of the adenylate (Sekine et al., 2001
). We suggest that the positive charge at position 265 could be involved in binding the phosphates of UDP-GlcNAc, similar to the role of the second lysine in KMSK. The proposed function for Arg265 is supported by its high level of conservation among WecA homologues, within a region containing a cluster of additional positively charged residues (Fig. 3
). A conservative replacement of Arg265 with lysine was made to determine whether this residue has any role in WecA function. The mutant protein, WecAR265K, was expressed at comparable levels with respect to WecAFLAG and was localized in the plasma membrane (Fig. 4b
, lane 5 and data not shown). WecAR265K showed a partial complementation of O7 polysaccharide biosynthesis in vivo (Fig. 4a
, lane 5) which correlated with a 44% and 48% reduction in the levels of transferase and binding activities in vitro, respectively (Table 3
). These results cannot be explained by a topological defect, since the conserved replacement of Arg265 would not affect the overall positive charge of the non-transmembrane segment, suggesting that the decreased functionality of the mutant WecA may be due to a defect in substrate binding. We speculate that the replacement of arginine with lysine decreases the affinity of the protein for UDP-GlcNAc. However, further experiments involving purified protein are required to confirm this conclusion.
Concluding remarks
In this study, we have compared the predicted topology of WecA with that of the MraY protein, whose topology has been determined experimentally (Bouhss et al., 1999
). Both proteins contain a large cytosolic-exposed non-transmembrane region, which contains conserved amino acid residues, especially Arg265 and His279. These and additional residues resemble key amino acids found in nucleotidyl transferases. The analysis of WecA mutant proteins containing amino acid replacements of these key residues strongly suggests their involvement in the recognition of UDP-GlcNAc. Since WecA can also complement the biosynthesis of O antigens containing N-acetylgalactosamine, other investigators have suggested that WecA has a loose substrate specificity, which involves the recognition of UDP-N-acetylgalactosamine in addition to UDP-GlcNAc (Amor & Whitfield, 1997
; Zhang et al., 1997
). Future studies involving purified WecA, currently under way in our laboratory, are needed to clarify its substrate specificity. At any rate, the amino acids identified in this study are also conserved in other WecA homologues such as Yersinia enterocolitica WbcO and Pseudomonas aeruginosa WbpL, which have predicted specificity for UDP-N-acetylfucosamine (Skurnik, 1999
). Therefore, it is possible that these amino acid residues may have a general role in the function of these proteins, perhaps by contributing to the architecture of a common fold required for the recognition of UDP-N-acetylhexosamines.
| ACKNOWLEDGEMENTS |
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| REFERENCES |
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Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
Amer, A. O. & Valvano, M. A. (2000). The N-terminal region of the Escherichia coli WecA (Rfe) protein, containing three predicted transmembrane helices, is required for function but not for membrane insertion. J Bacteriol 182, 498-503.
Amor, P. A. & Whitfield, C. (1997). Molecular and functional analysis of genes required for expression of group IB K antigens in Escherichia coli: characterization of the his region containing gene clusters for multiple cell-surface polysaccharides. Mol Microbiol 26, 145-161.[Medline]
Anderson, M. S., Eveland, S. S. & Price, N. P. (2000). Conserved cytoplasmic motifs that distinguish sub-groups of the polyprenol phosphate:N-acetylhexosamine-1-phosphate transferase family. FEMS Microbiol Lett 191, 169-175.[Medline]
Bordo, D. & Argos, P. (1991). Suggestions for safe residue substitutions in site-directed mutagenesis. J Mol Biol 217, 721-729.[Medline]
Bork, P., Holm, L., Koonin, E. V. & Sander, C. (1995). The cytidylyltransferase superfamily: identification of the nucleotide-binding site and fold prediction. Proteins 22, 259-266.[Medline]
Bouhss, A., Mengin-Lecreulx, D., Le Beller, D. & Van Heijenoort, J. (1999). Topological analysis of the MraY protein catalysing the first membrane step of peptidoglycan synthesis. Mol Microbiol 34, 576-585.[Medline]
Boyd, D., Manoil, C. & Beckwith, J. (1987). Determinants of membrane protein topology. Proc Natl Acad Sci USA 84, 8525-8529.
Boyd, D., Traxler, B. & Beckwith, J. (1993). Analysis of the topology of a membrane protein by using a minimum number of alkaline phosphatase fusions. J Bacteriol 175, 553-556.
Cohen, S. N., Chang, A. C. & Hsu, L. (1972). Nonchromosomal antibiotic resistance in bacteria: genetic transformation of Escherichia coli by R-factor DNA. Proc Natl Acad Sci USA 69, 2110-2114.
Dal Nogare, A. R. & Lehrman, M. A. (1988). Conserved sequences in enzymes of the UDP-GlcNAc/MurNAc family are essential in hamster UDP-GlcNAc:dolichol-P GlcNAc-1-P transferase. Glycobiology 8, 625-632.
Dan, N., Middleton, R. B. & Lehrman, M. A. (1996). Hamster UDP-N- acetylglucosamine:dolichol-P N-acetylglucosamine-1-P transferase has multiple transmembrane spans and a critical cytosolic loop. J Biol Chem 271, 30717-30724.
Dower, W. J., Miller, J. F. & Ragsdale, C. W. (1988). High efficiency transformation of E. coli by high voltage electroporation. Nucleic Acids Res 16, 6127-6145.
Feldman, M. F., Marolda, C. L., Monteiro, M. A., Perry, M. B., Parodi, A. J. & Valvano, M. A. (1999). The activity of a putative polyisoprenol-linked sugar translocase (Wzx) involved in Escherichia coli O antigen assembly is independent of the chemical structure of the O repeat. J Biol Chem 274, 35129-35138.
Guzman, L. M., Belin, D., Carson, M. J. & Beckwith, J. (1995). Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter. J Bacteriol 177, 4121-4130.
von Heijne, G. (1986). The distribution of positively charged residues in bacterial inner membrane proteins correlates with the trans-membrane topology. EMBO J 5, 3021-3027.[Medline]
von Heijne, G. (1997). Getting greasy: how transmembrane polypeptide segments integrate into the lipid bilayer. Mol Microbiol 24, 249-253.[Medline]
Lehrman, M. A. (1994). A family of UDP-GlcNAc/MurNAc: polyisoprenol-P GlcNAc/MurNAc-1-P transferases. Glycobiology 4, 768-771.
LVov, V., Shashkov, A. S., Dmitriev, B. A., Kochetkov, N. K., Jann, B. & Jann, K. (1984). Structural studies of the O-specific side chain of the lipopolysaccharide from Escherichia coli O:7. Carbohydr Res 126, 249-259.[Medline]
Marolda, C. L., Welsh, J., Dafoe, L. & Valvano, M. A. (1990). Genetic analysis of the O7-polysaccharide biosynthesis region from the Escherichia coli O7-K1 strain VW187. J Bacteriol 172, 3590-3599.
Marolda, C. L., Feldman, M. F. & Valvano, M. A. (1999). Genetic organization of the O7-specific lipopolysaccharide biosynthesis cluster of Escherichia coli VW187 (O7:K1). Microbiology 145, 2485-2495.
Osborn, M. J., Gander, J. E., Parisi, E. & Carson, J. (1972). Mechanism of assembly of the outer membrane of Salmonella typhimurium: isolation and characterization of cytoplasmic and outer membrane. J Biol Chem 247, 3962-3972.
Prinz, W. A. & Beckwith, J. (1994). Gene fusion analysis of membrane protein topology: a direct comparison of alkaline phosphatase and beta-lactamase fusions. J Bacteriol 176, 6410-6413.
Rick, P. D. & Silver, R. P. (1996). Enterobacterial common antigen and capsular polysaccharides. In Escherichia coli and Salmonella: Cellular and Molecular Biology, pp. 104122. Edited by F. C. Neidhardt and others. Washington, DC: American Society for Microbiology.
Sekine, S., Shimada, A., Nureki, O., Cavarelli, J., Moras, D., Vassylyev, D. & Yokoyama, S. (2001). Crucial role of the HIGH-loop lysine for the catalytic activity of arginyl-tRNA synthetase. J Biol Chem 276, 3723-3726.
Skurnik, M. (1999). Molecular genetics of Yersinia lipopolysaccharide. In Genetics of Bacterial Polysaccharides , pp. 23-51. Edited by J. Goldberg. Boca Raton, FL:CRC Press.
Sonnhammer, E. L. L., von Heijne, G. & Krogh, A. (1998). A hidden Markov model for predicting transmembrane helices in protein sequences. In Proceedings of Sixth International Conference on Intelligent Systems for Molecular Biology, pp. 175182. Edited by J. Glasgow and others. Menlo Park, California: American Association for Artificial Intelligence.
Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
Venkatachalam, K. V., Fuda, H., Koonin, E. V. & Strott, C. A. (1999). Site-selected mutagenesis of a conserved nucleotide binding HXGH motif located in the ATP sulfurylase domain of human bifunctional 3'-phosphoadinosine 5'-phosphosulfate synthase. J Biol Chem 274, 2601-2604.
Zhang, L., Radziejewska-Lebrecht, J., Krajewska-Pietrasik, D., Toivanen, P. & Skurnik, M. (1997). Molecular and chemical characterization of the lipopolysaccharide O-antigen and its role in virulence of Yersinia enterocolitica serotype O:8. Mol Microbiol 23, 63-76.[Medline]
Received 1 June 2001;
revised 20 June 2001;
accepted 9 July 2001.
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