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Sequences of phase variation candidates

Comparative whole-genome analyses reveal over 100 putative phase-variable genes in the pathogenic Neisseria spp., by L. A. S. Snyder, S. A. Butcher & N. J. Saunders

Microbiology vol.147, part 8, pp. 2321-2332

Sequences of the phase variation candidates from N. gonorrhoeae strain FA1090 that cannot be identified by homology to sequences from N. meningitidis strains MC58 or Z2491.

XNG0470:

ATGGCGGAAGAAATGCGCACCTGCAAGGCCTGCGGCGGGACCAAGCCGTTGGAGAAAGGGTTTAATGCCGTCCCGCGCAAGGAAGGGGGGGTCTATTATTACAAATCGTGCAAAACCTGCCGCAACAAGGCAGTCCGGCAAAAGCGCGCGGAAAAACGCGCGGCGGCGGGAGCCGGCGCGATGACGGCGGCAAGGCTGCACGGATACATCCGCGCCGCACACGCCGCCTGCCCGATATTGGGCGCCGGCCTGTGGACGCAACCGGCAGGGGAATGCGCGTGATACGCCTTATCCTGCCTTACCCCGTATCGGCAAACCGATATTGGCGGATTTGGCGCAACAGGGCGGTCAGGAGCGCGGAGGCGGCGGCGTATAAGGAAACCGTCCGCCGTATCGCGCAAGGGGCGGGCGCGATGCCGTCCGAAGGCTTTGTGGCGGTGCGCCTGCGCCTGATTCCCAAAGCGAACAAAGACGGCGGCGCAAACAAGACGGTGATCGATTTGGACAACGCCCTGAAGGTTGCGCTGGACGCGCTTCAAGGCGTTGCCTATCACAACGACAGGCAGGTGCGGCGCATTGCCGCCGAATATGGCGGCGAGCCGGTCGCAGGCGGCGGTTTGGCGGTGGAGGTGGGGGAATTGGATGAAAAGTAA

XNG0473:

ATGCTGAAGCACATCAAAGCCCTTAGATTTTTGAGGGTAATATCATTTGTGATGAGTGCGATTTTTTTTTGCCCTGTCATTGGCTGCAAAAGGCGGGGCCGTCACGAATTTCTTTATTTTGTTTTTTGTGTTATTGATAGCAGGCTCTCTTATGAGTAAAGCTATTAACAAGTTAAATGAAAAGGAAAAGGAAAAAATACGCCTGCTTTTCGCACAAAGAGAAAAATTTTATCGTATCTTGGAAAATCCGGAACAGGGATTTACTCCTCCTACCGCTCTTTTAAAAAGTGGCGAAACTTGTTTTTTGATTGATTATGTTAATATGGGCGAGGTGGTTACTGAGAGGGTCAGAACCTATACAGGGACACGTTTAAAACTTGGCTCCACACCGGTTTATTTAGGGGGCGGGAAATCCGTAGCAAATGAAAAACAGAAGAATGTTGCGTACGGAGAGTTGGTATTGACGAATTTCAGGTTGATTTTTGTAGGGAATATGAGAAGTATAGATTTGCCGCTGGATAAAATAAACAGCGTGGAATGTTTTCAAAGCAGCATCCGAATCAGCCAAAGCGGCAAAAACAAACCGATTTTCTTTAATACCGTTTTTAATCCGCAGTTATGGAAAGAGGCTATATTGGTACTTTCCGATAAGAAGTGA

XNG0503a:

ATGTGAGCGTTTTATGAAGCAATCCGTCCATAATAAAACAATTTTAAGTGTTTTGATTTCATCTATGTCTGTAACGGCTTTTTCCGCCCCCCACCCCCCCCCGCGATAAATGCTATTTCAGTCAATCGTACCGATTCCGGCGAACTCATCGGTTTTGAGTTTAATAATGCGGACAATACCGTAACCGGCAATGCGGATATTACGGTCAAACCTGCCGACCCTTCACAGCATTCGCGCCCGAAAGGGCTGATTATCCGGAGCGACCGTAACGAACCAAACAAAAACCAAGAAGTTCGCTTAAATAATATAGCGGATTAA

XNG1000:

ATGCCGCTTGAAAGGGCGGCTTTTCCTATTTGTCGAGTTGGGGGGGTTTTATGGCTCGGATTCATGTGAGAAACAATGGCGGCAACCGTTTCGGCGGCGTGCCTTACGGCAATCTGGCGGCGGAGCATTACTGTATCGTTGCGAAGCAGGACGGTGCAATCTTGGGGGCGGATGCCTACGGGCCGCCCAAGGATGGCGATGTGTTGGCGCTGGGTGTCTTGGAACAGGGTTTCCGTTTGGATGACGCGCAGATTATTGTGAAGACGGCGATGTCTTCCGGTATCACTGCCGATGTCGGCTTTGCGTATGCGGACGGTGCGGATGATGCGCACGTGCCTCAGGATGCGGCTTATTTTGCTTCGGGCGCGGACTTTGCGTCTGCCGGGCGTATCCGCTGCCAGTCTGCCAAACTGGTTACGCTGCCCAAGCAGGCTTTGCTGACGGTTACGCTTAAAGGGGCGGAAAATAAGAAGGCCGCCGATATCGATATTTTGATTTACGGCGAGAAGTTCGGCCAGTTGTAA

XNG1014:

ATGCCGTCCCGCGCAAGGAAGGGGGGTCTATTATTACAAATCGTGCAAAACCTGCCGCAACAAGGCAGTCCGGCAAAAGCGCGCGGCGGCGGGAGCCGGCGCGATGACGGCGGCAAGGCTGCACGGATACATCCGCGCCGCGCACGCCGCCTGCCCGATATTGGGCGCCGGCCTGTGGACGCAACCGGCAGGGGAATGCGCGTGACGCGCCTTATCCTGCCTTACCCCGTATCGGCAAACCGATATTGGCGGATTTGGCGCAACAGGGCGGTCAGGAGCGCGGAGGCGGCGGCGTATAAGGAAACCGTCCGCCGTATCGCGCAAGGGGCGGGCGCGATGCCGTCCGAAGGCGCGGTTGCCGTATATGTGCGGCTGATACCCAAAGCGAACAAAGACGGCGGCGCAAACAAGACGGTGATCGATTTGGACAACGCCCTGAAGGTTACTCTGGACGCGCTTCAAGGCGTTGCCTATCACAACGACAGGCAGGTGCGGCGCATTGCCGCCGAATATGGCGGCGAACCGGTAACGGGCGGCGGTTTGGCGGTGGAGGTGGGGGAATTGGAGATGGAACAGACGGATGCGGCAGACGAGGGTTGGGATTTCATCGGACAGGAGGGTTGGGATGTCTAG

XNG1341:

ATGAAAACAAAAACAGTCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAAATAGTCTAACCCGCCTTTCTTTAATCACTCTACTTATTTCCACTTCTTTTTATCCTGTTCGATCTTTTGCGGCTGCACCTCAAGAAATAAACTATTCGTTATCAGGCGGTAAAGTTTACGCAGATAAGTTCAGTATCGCCATTGGGGTTGAGGCAAAAGCTCAGGGGGATAATACCAAACTTAGCAACCTCAATCGGCACATCTGCCGAAGCAAATGCACCCGGGGCATTGGCTTTAGGGGGAAGTTCTGAAGCATCGAAAAAATTTAGTATAGCAGAAGGCTATCTGGCATCTAGTGATGGCTATGGTGCAATAGCGATTGGTTCTGCCGCCAAGATAAAGCAATTGGAAAAAGGCACAATAAATCATATTGTGGGAAACGATAATAAAGGTCTTTATGTCGATGCAGACGGCAATGTAACAAAGATAACCGTAAGGACTGAGTCGGAAAAAGATATTCTCTCAAGATACGGTCAAACTTACGGTGCGGTGGCACTAGGGTTTAGATCTTCTTCACATAATCTTTTTGCCAGTTCATTTGGAGCGTTTTCTACAGCCACAGCTATTGAAAGCTTGGCAGTCGGCGACAGCAGCCAATCAACGGGCTACCGCAGTGCTACTTTTGGCAGTCACAGCAGGGCTTTGGCAGAAGAAAGTTTGGCATTAGGTTATGAAACTCGGGCAAATGCTTATGGTTCTGTTGCTTTAGGTGCAGAATCTGTGGCGAATGAAGAAAATACCGTATCAGTGAGTTCCGATACATTGAAACGGAAAATCGTTAATGTCGCCGATGGCACGGAAGATTTATGATGCAGTAAATGTCCGCCAGTTGAACCGCTTAAGCAAACGTACAAACCGCGTCGGCGCAAGTGCTGCGGCGTTGGCTTCGTTAAAACCTGCACAATTAGGCAAAAACGACAAATTCGCCTTTTCTTTGGGCTTTGGAAGCTATAAAAATGCCCAAGCGGTGGCAATGGGGGCGGTGTTTAAGCCCGCTGAAAATGTGTTGCTTAATGTGGCGGGCAGTTTTGCCGGACCGGACCGGGCTTTCGGCGCGGGGGTTTTTTGGAAATTCGGCGGCAAACCGACACCTGCGGTTGCCGCACAAAACGCGGCGCATCCTGCAAAAGTTTTGCAATTGCGGCAGGAAGTGGCGGCGTTGCGCGCCCGGCAGGCAGAAACCGACCGCAAACTGCACAAACAGGCCGAAATGGAAAACGAGCTGCAACAGTTGCGCCGCGCGTTGTCCGAATTGAAAAAACATTGA

XNG1511:

ATGCGGGATGACGGCGCTGCAGGCGGCGGAGTACGCCATCGCCAGCGGCTGGGCCAGCTTCCGCGCCGAATGGCTGCAAAACAAAACTTTCGGCGGGTCTGGAAACCGCGGCGGCCCGACGCACAACCAAACCGCCGCCGTGCTGGATGCGGGAAGCTACGGCGATATGCCGACGACGGATTTTTGAGGGGGGGGTTCGGATATGGCTTTGAGGAACGCGTCTGATTTCTTGGGGGCTTACGGCGGCGGCGTGCGGGTCGAGCGGAGGCAATGCGCGGAACACGGCGGATACGCGGCGAAAAGCGTTTTGCGCGGCGTGTGGACGGGCTGCCCGGCCTGCCGGAAGCTGGAGGCGGCGGACGAAATGGCGGCATACGCGGAAACGCTGCGCCGCGGGGCGATGCGCGACGCGCTGGAAAAACGCATCGGGCGTTCGGGCATCGCCCCGCGGTTCAGAAACTGCCGGATTGAAAACTACGCCGTCAGCGATTCGATCCCGGGGATGGCGAGGGCGAAGGCGGCCGCCGCCGAGTATGCGGCAAACTTCGCCGATGTGTTGCAGACGGGGCGGAGCATGATTTTTTCGGGCAGGAGGGGCACGGGCAAAAACCACCTTGCCTGCGGCATCGCCCGCGAAGTCATCGCCGCCGGCAAAAGCGCGCTGGTCATCACGGTGGGCGATATGCTGCGGACGGTCAAGGACAGTTTCGGCGGCGGCGGCGAGGCGGGGGCGGTCGGGATTTTCGTGAAGCCCGATTTGCTGGTGCTGGACGAGTTCGGCGCGGGCAGTCTGTCGGAAACGGACGGGCGGATTTTGTTTTCCGTCGTCAACGCCCGGTACGAGCGGCTGATGCCGATGCTGGTGCTGACCAACCTGACGGCGGAAGCCTTCCGCGAAAACACCGACGCGCGGATCAGGGACAGGCTGCGGGACGGCGGCGGCAAGCTGATTCCGTTCGACTGGGAGAGCTACCGTGCGTGA

XNG1513:

ATGCCGTCCCGCGCAAGGAAGGGGGGTCTATTATTACAAATCGTGCAAAACCTGCCGCAACAAGGCAGTCCGGCAAAAGCGCGCGGCGGCGGGAGCCGGCGCGATGACGGCGGCAAGGCTGCACGGATACATCCGCGCCGCGCACGCCGCCTGCCCGATATTGGGCGCCGGCCTGTGGACGCAACCGGCAGGGGAATGCGCGTGACGCGCCTTATCCTGCCTTACCCCGTATCGGCAAACCGATATTGGCGGATTTGGCGCAACAGGGCGGTCAGGAGCGCGGAGGCGGCGGCGTATAAGGAAACCGTCCGCCGTATCGCGCAAGGGGCGGGCGCGATGCCGTCCGAAGGCGCGGTTGCCGTATATGTGCGGCTGATACCCAAAGCGAACAAAGACGGCGGCGCAAACAAGACGGTGATCGATTTGGACAACGCCCTGAAAGTTACGCTGGACGCGCTTCAAGGCGTTGCCTATCACAACGACAGGCAGGTGCGGCGCATTGCCGCCGATTACGCCGACGAGCCGGTCGCAGGCGGCGGTTTGGCGGTGGAGGTGGGGGAGTTGGATGAAAAGTAA

XNG1733:

ATGAAAGTATCTCAATCAGCAATGAATAAACTTGTTATTGCTGTTATTGCTTCTATGGGGCTAACAGCGTGCGCGGGTGGCGGTTCCGATTCATCTATGTCGGTTCAACCAAGCGTTTCGGAACAACTGAAAGACAATGCAAATGTTGATGCGAAAGATGAAAAAGTTATTGAATATCTGAAGAAATCATCATTAAAAGATGTACCAAAAGAATTGCAAGCCAAAGTATTAAAGGTTAAAGGTGATGAATATACAGGAGTGCGAAAACAATATGCAGGTAAGCTCGGTAAGGGTGAATCTGTCAAGGCAATGCTATTTCTAGACGGCGAAGAGCCGTTTAGTAAGGAACAACTTCAGAAGATGGATGTATATGTTAATGGTAAAAAATACGAAGGTAGTAAGGGGGGGGAACTAGATGTTCTCCCCAAAGGTTTGAGTGAGCAAAAGATTGAGTTTTACGGTGCGGATAAAGAACAGAATTATGCGCTATTAAAAACTTGGGTTTATGAGCAACCGTATTCTGTGGTTAGAGGCTATTTTGGCTACAGTCGAAAAGACGGTAATCCTATAGAAGGGGATGGACAAAATCCTGAAGAGATTCCTTTTGACTTGTATCTGGGCGACATTAGAGGCGTGGCAACAGATGAAGACAAATTACCCAAGGCTGGGAGCTTTCAATATGAAGGTCGGGCATTTGGCGGTAATGGGGTTTTATCCAAAGAATCGTTAGATAACCATAATGGCGTATTTAGATACACAATTGATTTTGATCGTAGAAAAGGCTCTGGCTCAATTGAAGGAATGGAACAATATGGCAAGATCAAATTAGAAGAAGCTGCTATTGAGAGAATCCCTTATCGAGAGTCCGGCTCCAGCTTGGGGTTGAAAGACCGGGTTTCTTATTTCGGCGTGAACGAAGGGGTGGCTATGTTAGAGAAGGATAATGAGATTAAAAAGTATCATTTGGGTATTTTCGGCGAAGCGGCTAATGAAGTAGCAGGTGCTGTAAGCCAAGAGCATAAACATCAAGCTGTTATCGGTTTCGGCGGCGAGAAGAAATAG

XNG1834:

ATGCGCCGATACCGTCTGAACCCTTCAGACGGCATTTTTCCGCATAATGAAACCAAACCGTTTCCACCCGACAGGACAGGCTTTCCCCCCCCAACCGGAAGGCAGCCTGCTGATTGTCATTTAAATACCCGCCTGATTCCGTCTGTTTGCAAGGGAAATAGCCGTTTATTTCCGCTTGGGCGGAAACCGGTCCTATTGAGTAAAAGGCATTTTGTCCGACTCATCAGGGCTGCATCAACGGAATATAAAAACACAGCCTAA

XNG1856:

ATGAGATTAAAATTAAAAAATTATGATTGTTCTGACTTTGATTTGGAAGATTTCCCACAAGACAAGTTAGAAAATTTTTGTATACTTTTGACATTATCAATAGGTTTTGATGAAAGTAATGGTGCTGATTATTTTTATGTTTATATATATAGCACCGAATGGTTACTTTCAAATATACATAGACCGATGTCATTAAAAAACTCAATTGTTACAAACCGTTTTAATATTGAACACATATTAAAATTGATAAATGATATATTGGAAATATGTAATTCAACGTCTGAAGATAAGTCTATATCAAATTTGGCAAAATATTTTGACTGGGAATTTGACGATTATAATCTAAATATCCAAGACTAA


Sequence of a phase variation candidate from N. meningitidis strain Z2491 that was not annotated by Parkhill et al. (Nature 404, 502-506, 2000).

NMA1707a:

ATGCGAAACAAACAAACGCCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAGCAAAAAATTATAACCCCCTTCCTGCCGACGCACGCACTTTCCGCGCGGCGCATTCCCCTTTTCCCGCCCCTCAAATCCGCCTTTTCTTCAGGCAGGGTTTCAGCCCGCCTCTTTTCCCTGTTTTCCTTTCCCCGACACGCGTGCGCGCCCCCTGCCGCACTGTGCTGCACTTTCGCGCCCGGACGGCATCGTTCCGCCATCCGGTTCTCTGTTTTAAATACCCCTGTTTCAGAAAGAAATGCAGATGTTTCAACACACAGGACGACACATAA







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