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Molecular Pathogenesis Program, Skirball Institute of Biomolecular Medicine and Department of Microbiology, New York University Medical Center, 540 First Avenue, New York, NY 10016, USA
Correspondence
Richard P. Novick
novick{at}saturn.med.nyu.edu
| ABSTRACT |
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-ketoacyl-acyl carrier protein synthase. It also inhibits other processes that utilize essential thiols. Cerulenin has been widely reported to block protein secretion at sub-MIC levels, an effect that has been postulated to represent interference with membrane function through interference with normal fatty acid synthesis. This study confirms the profound reduction in extracellular proteins caused by low concentrations of the antibiotic, and shows by Northern blot hybridization that this reduction is due to interference with transcription. By exchanging promoters between entB, a gene that is inhibited by cerulenin, and entA, a gene that is not, it was also shown that the antibiotic does not block secretion. Subinhibitory concentrations of cerulenin were also found to block transcriptional activation of at least two regulatory determinants, agr and sae, that function by signal transduction. Interference with the activation of these and other regulatory determinants probably accounts for much of the inhibitory effect on exoprotein production of sub-MIC concentrations of cerulenin.
| INTRODUCTION |
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-haemolysin (Saleh & Freer, 1984
-amylase, protease and levansucrase (Mantsala, 1982
-galactosidase (Martinez et al., 1982
-lactamase (Mantsala & Lehtinen, 1982We began the present study by revisiting the reported interference by subinhibitory concentrations of cerulenin with exoprotein secretion and found that the antibiotic blocks exoprotein synthesis and therefore would not be useful for the identification of autorepressors. Analysis of the effects of subinhibitory concentrations of cerulenin on gene fusions revealed further that the antibiotic does not block secretion after all, and that it blocks synthesis at the level of transcription. We find that many exoprotein genes are blocked by subinhibitory concentrations of cerulenin, a rare few are stimulated and others are unaffected, and that the effects of subinhibitory concentrations of cerulenin on exoprotein profiles vary dramatically among Staphylococcus aureus strains. Additionally, subinhibitory concentrations of cerulenin inhibit the transcription of certain global regulatory genes such as agr and sae, so its effects on exoprotein genes may be mediated via global regulators. Finally, since S. aureus pathogenesis depends on a large set of extracellular proteins, whose synthesis is controlled by global regulators, it was predicted that subinhibitory cerulenin would attenuate staphylococcal pathogenesis, and this was confirmed in a murine sepsis model.
| METHODS |
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DNA procedures.
Amplification reactions (PCRs) were carried out by using different primers (see Table 2
). For switching promoters between entA and entB, primers containing PstI and BamHI restriction sites at the 5' end were designed. For cloning coding regions of entA and entB, primers containing BamHI and KpnI restriction sites at the 5' end were used. Chromosomal DNA isolated from strain S6C in the case of the entB gene, and RN8530 in the case of entA, was used as template. Plasmid and chromosomal DNA were isolated by using a QIAprep Spin Miniprep Kit from Qiagen. PCR products were purified by using a QIAquick PCR Purification Kit also from Qiagen. PCR products were digested with KpnI, PstI and BamHI and cloned into the multiple cloning site of pCN50 (Charpentier et al., 2004
). Clones in pCN50 were transformed into E. coli DH5
and then moved into RN4220 by electroporation (Novick, 1991
). All plasmids were transferred from S. aureus RN4220 to other S. aureus strains by standard transduction techniques by using phage 80
(Novick, 1991
).
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RNA preparation.
Cell pellets were treated with RNA Protect reagent (Qiagen) and mechanically disrupted by agitation with glass beads using the Bio 101 FastPrep Apparatus. RNA was purified using the Qiagen RNeasy kit, and its integrity checked by agarose gel electrophoresis (Weinrick et al., 2004
).
Northern blot hybridization.
RNA samples corresponding to equal numbers of cells were separated by gel electrophoresis through 1 % denaturing agarose (MOPS/formaldehyde), vacuum-blotted to Hybond-N+ membranes (Amersham), and UV cross-linked. Blots were hybridized overnight to [
32P]dATP-labelled, PCR-generated probes. Washed blots were exposed to phosphorimager screens which were read by a Molecular Dynamics Phosphorimager. Primers (Integrated DNA Technologies) are listed in Table 2
.
Murine infection model.
Bacterial samples, 1·5x108 c.f.u. (S. aureus strain LS-1), in 0·1 ml buffered normal saline, were administered by tail vein to 25 g Swiss Webster mice. Cerulenin (in ethanol) was added to the input inoculum to give 0, 5, 10 or 40 mg kg1. Cerulenin alone, 40 mg kg1, served as control for cerulenin toxicity. Mice were housed in microisolator cages and fed a standard diet with water ad libitum. They were observed for visible ill effects for 24 h.
| RESULTS |
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Subinhibitory concentrations of cerulenin block exoprotein synthesis rather than secretion
Earlier reports of blockage of secretion by subinhibitory concentrations of cerulenin did not formally rule out blockage of synthesis, though one report suggested this as a possibility. In order to test the above hypothesis regarding autorepressors, we needed first to reinvestigate this possibility, which was done by switching the promoters and coding regions of two superantigen genes, entA and entB. As noted, EntB is not secreted in the presence of subinhibitory concentrations of cerulenin while EntA is secreted. Tests of the effects of subinhibitory concentrations of cerulenin on these two constructs, in comparison with the native genes, are shown in Fig. 3
(a): subinhibitory concentrations of cerulenin blocked the appearance of either EntA or EntB, when the respective genes were under entBp control, but not when they were under entAp control. In other words, the target of subinhibitory concentrations of cerulenin inhibition seemed to be entBp and not EntB itself, which, once made, is secreted in the presence of the drug. We noted that in these gels, with the entA promoter, there was less EntB in the supernatant in the presence than in the absence of cerulenin. This difference was not seen in an agr-null background (not shown); its basis is presently under study.
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-haemolysin), splC, geh (glycerol ester hydrolase) and map were strongly inhibited, whereas the genes sspA (serine protease) and spa (protein A) were affected minimally. We also analysed one gene (fabF) encoding a cytoplasmic protein, fatty acid synthetase. This gene was chosen because of the known inhibition of its product by cerulenin. fabF is transcribed only very early during growth and was moderately stimulated by subinhibitory concentrations of cerulenin an effect that could be the result of a modest inhibition of fatty acid synthesis at the low cerulenin concentration used.
As there is no obvious direct connection between cerulenin and the transcription process, it seemed likely that subinhibitory concentrations of cerulenin were affecting one or more of the well-known global regulators that control transcription; in this connection, it seemed significant that many of the genes whose transcription patterns were examined are controlled by agr. Given the possibility that the antibiotic affects membrane function, regulatory genes that involve transmembrane signalling could well be affected. Accordingly, we Northern blotted these same RNA gels with probes specific for agr (RNAIII) and sae, both of which function by transmembrane signalling, and for rot and sarA, which do not. As can be seen in Fig. 4(b)
, subinhibitory concentrations of cerulenin blocked agr induction, most strongly at t6, blocked induction of the two larger sae transcripts at t3 and t6, and stimulated the sarA and rot transcripts at t6 (and slightly stimulated the sarB and C transcripts, also at t6). With the notable exception of sspA, these results are largely consistent with the known effects of mutations affecting the four regulatory genes on transcription of these exoprotein genes, supporting the conclusion that subinhibitory concentrations of cerulenin act largely or exclusively through regulatory genes. The effects of subinhibitory concentrations of cerulenin on sspA transcription are not understandable in terms of the known regulation of this gene since it is upregulated by agr and downregulated by sarA, it should have decreased sharply in the presence of subinhibitory concentrations of cerulenin. Further study of this apparent anomaly is planned.
agr inhibition by cerulenin
Since agr activation is required for sae activation, i.e. downregulation of sae would follow from downregulation of agr, we focussed on agr. We have shown above that subinhibitory concentrations of cerulenin inhibit transcription from the agrp3 promoter. The experiment reported in Fig. 5
(a) showed that subinhibitory concentrations of cerulenin also inhibit transcription from the agrp2 promoter. As both of these promoters are activated by the agr autoinduction circuit, which involves the synthesis and secretion of an autoinducing peptide (AIP), subinhibitory concentrations of cerulenin could affect either the synthesis of this peptide or the response to it through the agr signalling module. To determine whether subinhibitory concentrations of cerulenin inhibit either of these steps in agr activation, we cloned the agrBD module, responsible for AIP synthesis (Ji et al., 1997
), behind the entA promoter, which, as shown above, is insensitive to cerulenin. RN7206 containing this module was grown in the presence of cerulenin (10 µg ml1) or in the absence of the drug and its supernatant used to test for AIP-dependent activation of the AgrAC signalling module in the presence or absence of cerulenin at the same concentration, using the agrp3-lux construct as a reporter. The results of this test were that cerulenin at 10 µg ml1 did not detectably inhibit either the synthesis/secretion or the action of the AIP (not shown). Thus cerulenin must act by inhibiting a regulatory system that is upstream of agr and required for its activation. Since cerulenin is very unlikely to affect transcription by directly interacting with DNA, it is suggested that the drug must block the function of a pre-existing regulatory unit, presumably by inactivating a cerulenin target, such as fatty acid synthase. A simple test of this possibility was a test for reversal of cerulenin inhibition by fatty acids. As shown in Fig. 5(b)
, heptadecanoic acid partially reverses the inhibition of exoprotein production and of agr activation by cerulenin at 10 µg ml1, consistent with the blockage of an unidentified step in transcription requiring fatty acid synthesis.
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| DISCUSSION |
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Since cerulenin acts by inhibiting fatty acid synthesis and related processes, there is no obvious means for it to block transcription directly, suggesting that it might act through regulatory genes whose activation is dependent on pre-existing functions rather than on primary transcription. We addressed this by testing for the effects of subinhibitory concentrations of cerulenin on certain regulatory genes. We observed that subinhibitory concentrations of cerulenin profoundly inhibit the transcriptional activation of two of these, agr and sae, both of which are activated by transmembrane signalling, but had a moderate stimulatory effect on two others, sarA and rot, which do not involve transmembrane signalling. Since cerulenin inhibition of agr activation was partially reversed by heptadecanoic acid, we suggest that the antibiotic may inhibit agr signalling by modifying the composition of the membrane. Since agr signalling involves two pre-transcriptional steps, maturation of the AIP (Lina et al., 1998
) and activation of the receptor (Lina et al., 1998
; Novick et al., 1995
), both of which involve transmembrane proteins, either of these processes could be the target of cerulenin inhibition. Preliminary experiments, however, suggest that neither of these processes is sensitive to cerulenin (unpublished data). Therefore, some upstream pre-transcriptional process may be the target.
It is clear from the various exoprotein profiles presented that agr is responsible for only a portion of the subinhibitory concentrations of cerulenin effects on exoprotein synthesis. It is likely that one or more additional regulatory genes are involved; however, there is presently only a slight hint that activation of any regulatory determinant could involve a cerulenin-sensitive process. This is that the results with two strains, MRSA252 and the arlR mutant, show only minimal effects of subinhibitory concentrations of cerulenin on exoprotein profiles. Thus activation of the arlRS signalling pathway, or of an unknown regulatory element that is defective in MRSA, may be directly affected by subinhibitory concentrations of cerulenin. Since arlRS actually downregulates most of the exoprotein genes in its regulon, the arlR mutant generates a characteristic exoprotein profile that is easily seen to be resistant to the effects of subinhibitory concentrations of cerulenin. The mechanism of activation of arlRS, however, is not presently known. Incidentally, is it not remarkable that cerulenin blocks the formation of staphylococcal peptide autoinducers and of the homoserine lactone autoinducers used by Gram-negative bacteria, and does so by apparently different mechanisms? Finally, subinhibitory concentrations of cerulenin appear to have a dramatic effect on lethal staphylococcal sepsis in the mouse. Because these results raise the possibility that cerulenin could serve as an anti-infective, despite its interference with certain eukaryotic functions, it is planned to investigate this infection model in more detail.
| ACKNOWLEDGEMENTS |
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Received 7 April 2005;
revised 4 June 2005;
accepted 13 June 2005.
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