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1 Departamento de Biotecnología, Instituto de Agroquímica y Tecnología de Alimentos, CSIC, Apdo. Correos 73, 46100 Burjassot, Spain
2 Microbiologie et Génétique Moléculaire, CNRS/INRA/INA-PG, UMR2585, 78850 Thiverval-Grignon, France
Correspondence
Gaspar Pérez-Martínez
gaspar.perez{at}iata.csic.es
| ABSTRACT |
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The GenBank/EMBL/DDBJ accession number for the sequence reported in this paper is DQ011873.
| INTRODUCTION |
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His-HPr functions as a phosphoryl donor to the different PTS transporters, which consist of three different proteins or domains (IIA, IIB and IIC) (Postma et al., 1993
In addition to its role in sugar transport, the PTS is implicated in several regulatory processes. P
His-HPr, the form involved in sugar transport through the PTS, can also transfer its phosphate to other non-PTS proteins, thereby regulating their functions (Deutscher et al., 2002
; Stülke et al., 1998
). Furthermore, HPr can be phosphorylated at residue serine-46 by an ATP-dependent metabolite-activated protein kinase (HPrK/P) (Galinier et al., 1998
; Kravanja et al., 1999
; Reizer et al., 1998
). P-Ser-HPr participates in the mechanism of sugar-uptake regulation known as inducer exclusion and in carbon catabolite repression (CCR), acting as a cofactor of the transcriptional regulator CcpA (Deutscher et al., 1995
; Schumacher et al., 2004
).
Early biochemical and physiological studies, which were based on the isolation of mutant strains resistant to the toxic glucose analogue 2-DG, allowed the identification of PTSMan as the main glucose transporter in many lactic acid bacteria (LAB) (Abe & Uchida, 1989
; Gauthier et al., 1994
; Thompson & Chassy, 1985
; Veyrat et al., 1994
). In addition to its role in glucose uptake, several functions have been assigned to PTSMan proteins. Mutant strains resistant to 2-DG (affected in PTSMan) show different pleiotropic effects: they are defective in CCR and have an altered pattern of expression of several enzymes. In particular, Streptococcus salivarius and Streptococcus mutans strains lacking the IIABMan component show alterations in the pattern of synthesized proteins, as revealed by two-dimensional electrophoresis. Moreover, in these strains, the expression of certain virulence genes is also diminished (Abranches et al., 2003
; Lapointe et al., 1993
). Finally, synthesis of the IICMan component of Listeria monocytogenes (mptC gene) enhances sensitivity to class IIa bacteriocins (Ramnath et al., 2004
).
Gene clusters encoding PTSMan proteins have been characterized in many firmicutes, including S. salivarius (Lortie et al., 2000
), S. mutans (Abranches et al., 2003
), Streptococcus thermophilus (Cochu et al., 2003
), Streptococcus bovis (Asanuma et al., 2004
), Enterococcus faecalis (Héchard et al., 2001
) and List. monocytogenes (Dalet et al., 2001
). In this work, we have identified the man operon from L. casei. In order to study its involvement in the regulation of sugar metabolism, several genes of the man operon were disrupted or deleted, and the effect of these mutations on sugar uptake and CCR was investigated.
| METHODS |
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was used as host in cloning experiments and was grown in LuriaBertani medium at 37 °C with vigorous shaking. Agar plates containing the same media were prepared by adding 1·5 % agar. E. coli and L. casei transformants were selected with ampicillin (50 µg ml1) and erythromycin (5 µg ml1), respectively.
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DNA manipulation and sequencing.
Total DNA was isolated from L. casei as described elsewhere (Posno et al., 1991
). Recombinant DNA techniques were performed by following standard procedures (Sambrook et al., 1989
). DNA sequencing was carried out by using the ABI PRISM dRhodamine Terminator Cycle Sequencing Ready Reaction kit with AmpliTaq DNA polymerase and an automated ABI 310 DNA sequencer (Applied Biosystems). M13 universal and reverse primers, or custom primers hybridizing within the cloned fragments, were used to sequence both strands of DNA. Sequence alignment and detection of putative ORFs were carried out with DNAMAN 4.0 for Windows (Lynnon BioSoft). Sequence similarities were analysed with the BLAST program.
Construction of upsA, upsR, manM and manO mutant strains.
Internal DNA fragments of manM, upsA and upsR were obtained by PCR using L. casei chromosomal DNA. A manM fragment was obtained with the primers C221-1 (5'-GGCCAATTGGAAATGATTGC-3') and C221-2 (5'-TGTTAATAACCATGGCATAC-3'); the upsA fragment with primers upsA1 (5'-CCATGGTTTGACGCTGCC-3') and upsA2 (5'-CCATCAGATATGCTGTCAC-3'), and the upsR fragment with primers manR1 (5'-TAACCCATTTGCTGTATCGC-3') and manR2 (5'-GACTCACGACCGGCTTTG-3'). These DNA fragments were cloned in the integrative vector pRV300 digested with EcoRV, giving pRVmanM1, pRVupsA1 and pRVupsR1, respectively, and they were used to transform the L. casei wild-type strain BL23. Chromosomal integration at the correct location was confirmed by PCR analysis and DNA sequencing. Subsequently, one integrant of each type was selected for further studies and these were named BL240, BL241 and BL242, respectively. For the construction of a manO-deleted strain, the manN 3' end was amplified with oligonucleotides D221-2 (5'-ACGCTGCAAGATAACTTGG-3') and manO1 (5'-TTAAACTCATCTTGAACG-3'), and the 3' end of manO was amplified with manO2 (5'-CGTGGAATGAGATTGATTTGG-3') and manO3 (5'-CATCTATTGACGAGTTG-3'). The two PCR products were digested with EcoRI and EcoRI/HindIII, respectively, and cloned in one step into SmaI/HindIII-digested pRV300, giving pRVmanNO. This plasmid was used to transform the L. casei wild-type strain, and single cross-over integrants were selected as erythromycin-resistant clones. One of these integrants was grown for 200 generations in the absence of antibiotic, and clones which underwent a second recombination event were selected as erythromycin-sensitive colonies. In one of these clones, which was named BL243, the deletion of the 5' portion of manO was confirmed by PCR analysis.
RNA isolation and Northern blot analysis.
RNA was isolated from L. casei cells grown to an OD550 of 0·8 in MRS fermentation medium containing 0·5 % of the appropriate sugars. Cells were collected by centrifugation, washed with 50 mM EDTA, pH 8·0, resuspended in 1 ml Trizol reagent (Gibco-BRL) and mechanically disrupted in a Mini-Beadbeater (Biospec Products). Total RNA was isolated according to the protocol of the Trizol manufacturer. Sample preparation, denaturing agarose gel electrophoresis and RNA transfer were performed by standard methods (Sambrook et al., 1989
). The RNA probe for the manM gene was obtained by using plasmid pRVmanM1, which carries an internal manM fragment, as template for the in vitro synthesis of the antisense RNA, which was carried out with T7 RNA polymerase and the reagents from the Roche digoxigenin-RNA labelling kit. A manO probe was obtained from EcoRI-digested pRVmanNO and T7 RNA polymerase. Hybridization, washing and staining were performed as recommended by the supplier using the CDP-Star chemiluminescent substrate (Roche).
Determination of transcriptional start sites and RT-PCR.
The transcription initiation of manL was determined with the 5'/3' RACE (rapid amplification of cDNA ends) kit (Roche), following the manufacturer's instructions. Reverse transcription reactions were performed with total RNA isolated from BL23 grown on glucose and with primer A112-1 (5'-TCTTGATACCTTCACGTCC-3'). The cDNA was dA-tailed, and then amplified by PCR using the primers oligo dT-anchor supplied in the kit and A112-1. The resulting PCR product was used in a second PCR with primers PCR-anchor (supplied with the kit) and A112-2 (5'-ACTTCATCGTCTGGGTCG-3'). The amplified DNA fragment of about 0·3 kb was purified and sequenced. Determination of the manO transcriptional initiation site was determined with the same kit by using the oligonucleotide manO4 (5'-CTAAACGCCCGTTTGATAAC-3') for cDNA synthesis. The 0·35 kb PCR product was purified and sequenced. RT-PCR was carried out to verify if manLMN and manO genes were cotranscribed. RNA samples from L. casei wild-type isolated from glucose-grown cells were treated with amplification grade deoxyribonuclease I (Sigma) to eliminate contaminating DNA. Reverse transcription reactions were performed with 5 µg total RNA using avian myeloblastosis virus reverse transcriptase (AMV-RT) (Sigma) with oligonucleotide manO5 (5'-AGATCACCGACGCAATGAC-3'). The reverse transcription reactions (20 µl) were carried out as recommended by the manufacturer. The subsequent PCR amplifications were performed with 5 µl of each RT reaction mixture and with oligonucleotides manO5 and D221-2 described above.
Sugar uptake and inducer-exclusion experiments.
D-[14C]Glucose uptake by whole cells of L. casei was performed according to Chassy & Thompson (1983a
, b)
. BL23, BL240, BL241, BL242 and BL243 were grown in 50 ml MRS fermentation medium supplemented with 0·5 % glucose or 0·5 % fructose to an OD550 of 0·8. Cells were collected by centrifugation, washed twice with 10 mM potassium phosphate buffer, pH 7·4, containing 1 mM MgCl2, and resuspended in the same buffer [0·1 mg (dry weight) ml1]. Cells were incubated at 37 °C, and D-[14C]glucose (125 µM final concentration, 0·6 mCi mmol1, 22 MBq mmol1) was added. At intervals of 0, 0·25, 0·5, 1, 2, 4 and 8 min, samples (1 ml) were withdrawn and filtered through 0·2 µm pore-size Millipore membranes. Filters were washed and radioactivity was quantified by scintillation counting. Inducer exclusion of [14C]maltose transport (0·5 mM final concentration, 0·5 mCi mmol1, 19 MBq mmol1) by glucose was carried out with maltose-grown cells, as described previously (Viana et al., 2000
).
Enzymic activities.
N-Acetylglucosaminidase activity was measured in permeabilized L. casei cells. For permeabilization, cells were collected as for RNA isolation, washed with 10 ml 50 mM potassium phosphate buffer, pH 6·8, and resuspended in a one-tenth volume of the same buffer. Fifty microlitres of toluene : acetone (1 : 9) was added and cells were vortexed at full speed for 5 min. Ten microlitres of the cell suspension was added to 250 µl 10 mM potassium phosphate buffer, pH 6·8, 1 mM MgCl2, 5 mM p-nitrophenyl-N-acetyl-
-D-glucosaminide (Sigma), and the mixture was incubated at 37 °C for 10 min. The reaction was stopped with 250 µl 5 % Na2CO3 and the absorbance was measured at 420 nm.
To determine L-sorbose-1-phosphate reductase activity, L. casei strains were grown to an OD550 of 0·8 in MRS fermentation medium containing 0·5 % of the appropriate sugars. Crude extracts were obtained by shaking the cells in a Mini-Beadbeater with 0·1 mm glass beads (four cycles of 30 s at maximal speed with intervals of 1 min on ice). Protein concentrations were determined with the Bio-Rad dye-binding assay. L-Sorbose-1-phosphate reductase activity was determined as described by Yebra et al. (2000)
. Fructose-1-phosphate (2·5 mM) was used as the substrate. The reaction mixture (0·5 ml) contained 12·5 mM MOPS buffer, pH 6·2, 0·2 mM MnCl2, 0·1 mM NADH and 10 µl crude extract. The rate of NADH oxidation was determined by measuring the rate of absorbance change at 340 nm. Specific enzymic activity is given in nanomoles per minute per milligram of protein.
Determination of the phosphorylation state of HPr.
L. casei cells were grown in MRS medium (50 ml) containing 0·5 % glucose to an OD550 of 0·6. The pH of the culture was lowered to 4·5 by adding concentrated HCl. Cells were collected by centrifugation at 4 °C, resuspended in 1 ml cold 20 mM potassium acetate buffer, pH 4·5, and broken in a Mini-Beadbeater using glass beads. Cell-free extracts were obtained by centrifugation for 10 min at 14 000 g and 4 °C and were separated on non-denaturing 15 % polyacrylamide gels, which allowed the separation of phosphorylated and non-phosphorylated HPr. Proteins were electroblotted onto nitrocellulose membranes, and HPr was detected using a rabbit antiserum raised against Bacillus subtilis HPr as first antibody and anti-rabbit IgG conjugated to alkaline phosphatase as second antibody.
| RESULTS |
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G 11·1 kcal mol1, 46·4 kJ mol1) and another downstream of manO (
G 21·4 kcal mol1, 89·5 kJ mol1). Upstream of manL, two ORFs, upsA and upsR (ups for upstream), were present (Fig. 1a
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L. casei BL30 has previously been isolated as a spontaneous mutant resistant to 2-DG and affected in PTSMan activity (Veyrat et al., 1994
). In order to identify the mutation present in this strain, its manLMNO genes were sequenced. A 16 bp deletion was found in manL at the level of a 6 bp direct repeat, which introduced a frameshift in manL (Fig. 2
). This implied the loss of the region encoding the putative IIB phosphorylatable histidine, which explains the observed phenotype.
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G 27·7 kcal mol1, 116 kJ mol1) was found.
Glucose uptake in the wild-type and manM mutant
We determined the uptake of glucose in L. casei wild-type and manM mutant strains grown on glucose- or fructose-containing medium (Fig. 4
). The manM mutant internalized glucose at a significantly lower rate than the wild-type, indicating that this mutant was impaired in the main glucose transport system in L. casei, the PTSMan. The remaining glucose uptake in the manM mutant could be due to glucose transport through a proton-driven permease, as shown previously for the L. casei strain BL30 resistant to 2-DG (Veyrat et al., 1994
). Glucose was incorporated at a similar rate by the wild-type when grown on either glucose or fructose, corroborating the constitutive expression of the man operon. BL241 (upsA) and BL242 (upsR) mutants showed glucose uptake rates similar to those determined for the wild-type, indicating that disruption of upsA or upsR did not affect the transport of glucose by the PTSMan (data not shown).
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-proteobacteria (Zúñiga et al., 2005
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His-HPr migrate to nearly identical positions, but they can be distinguished by heating the samples before loading, which leads to hydrolysis of the thermolabile P
His bond. All possible phosphorylated forms, P
His-HPr, P-Ser-HPr and doubly phosphorylated 2P-(His, Ser)-HPr, could be readily detected in L. casei wild-type cells (Fig. 7
His-HPr were present in the manM strain, no P-Ser-HPr or doubly phosphorylated HPr could be detected. Hence, the CCR and inducer-exclusion defects detected in the manM mutant are probably a direct consequence of the low level of phosphorylation of HPr at the regulatory serine-46.
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| DISCUSSION |
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An additional manO transcript has been found in L. casei BL23, S. bovis (Asanuma et al., 2004
) and S. salivarius (Lortie et al., 2000
). A manO-specific promoter has been proposed for the streptococci in the intergenic region between manN and manO. The 5' end of the L. casei manO transcript is located at the base of a possible stemloop structure in the RNA, and a consensus promoter sequence is not found. This makes it possible that the manO RNA results from processing of the manLMNO transcript at an RNase cleavage site determined by the stemloop. However, the expected 3·1 kb manLMN transcript was not detected.
In order to elucidate the function of the manO gene product, we obtained, for the first time, a knock-out strain in this gene. No clear phenotype could be determined for this mutant. manO homologues are only present in the genomes of firmicutes possessing a PTSMan, and are usually associated with the man operon, with the exception of Lactobacillus plantarum and S. mutans, in which it is located 22 kb and 3·2 kb away from manN, respectively. Also, in Streptococcus pneumoniae, manO is placed upstream of manL and separated by a 110 kb fragment and, curiously, Lactococcus lactis has two copies of manO separated by a gene of unknown function (Zúñiga et al., 2005
). This, together with the fact that L. casei manO RNA levels showed some variation depending on the carbon source, suggests that the manO gene product participates in some regulatory process.
Glucose transport by the PTS has a remarkable influence on cell physiology, as it regulates the expression of many genes encoding proteins involved in the uptake and metabolism of other carbon sources, and controls the activity of transcriptional regulators (Deutscher et al., 2002
; Titgemeyer & Hillen, 2002
; Vadeboncoeur & Pelletier, 1997
). The analysis of a spontaneous 2-DG-resistant mutant (BL30) lacking glucose-specific PTS activity provided the first evidence that the PTS in L. casei is involved in the CCR effect exerted by glucose on the utilization of lactose, ribose and sorbose (Veyrat et al., 1994
; Yebra et al., 2000
). It has been shown here that the phenotype of this strain is most likely due to a mutation in the IIABMan protein encoded by manL. We have also shown that the repression mediated by glucose of sorbose-1-phosphate reductase and N-acetylglucosaminidase activities is partially relieved in another mutant impaired in PTS glucose uptake, due to a lack of the IICMan protein encoded by manM. Additionally, inducer exclusion exerted by glucose on maltose transport is also abolished in this mutant. In L. casei, CCR and inducer exclusion of non-PTS sugars are controlled by the phosphorylation state of HPr at serine-46 (Viana et al., 2000
; Dossonnet et al., 2000
). We have shown that a manM mutant grown on glucose accumulates a substantial amount of P
His-HPr. This is conceivable in view of the fact that the phosphotransfer chain was interrupted at the level of IICMan, and thus no P
His-HPr was consumed during sugar transport. By contrast, in wild-type cells actively growing on glucose, P
His-HPr is preferentially utilized for glucose phosphorylation through the PTS, and low steady-state levels of P
His-HPr are probably maintained. The apparent low phosphorylation of HPr at serine-46 in the manM mutant could be explained by two facts: (i) P
His-HPr is a poor substrate for HprK/P-catalysed phosphorylation at serine-46 (Deutscher et al., 1984
) and (ii) the reduced rate of sugar utilization caused by a defect in PTS transport would not trigger activation of the kinase function of HprK/P (Dossonnet et al., 2000
; Kravanja et al., 1999
). It seems, therefore, that the pleiotropic effect of a mutation in the PTSMan proteins could, at least partly, be due to diminished phosphorylation of HPr at serine-46.
In summary, the PTSMan of L. casei has been identified and characterized. We have also shown its participation in glucose repression and regulation of sugar uptake by inducer exclusion. At present, we are designing new experiments to study the possible role of the manO gene product in the regulation of sugar transport.
| ACKNOWLEDGEMENTS |
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Received 23 June 2005;
revised 23 September 2005;
accepted 18 October 2005.
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