Microbiology
HOME HELP FEEDBACK SUBSCRIPTIONS ARCHIVE SEARCH TABLE OF CONTENTS
 QUICK SEARCH:   [advanced]


     


This Article
Right arrow Abstract Freely available
Right arrow Full Text (PDF)
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Right arrow Citation Map
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Right arrow reprints & permissions
Citing Articles
Right arrow Citing Articles via CrossRef
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by LaMonte, B. L.
Right arrow Articles by Hughes, J. A.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by LaMonte, B. L.
Right arrow Articles by Hughes, J. A.
Agricola
Right arrow Articles by LaMonte, B. L.
Right arrow Articles by Hughes, J. A.
Microbiology 152 (2006), 1451-1459; DOI  10.1099/mic.0.28489-0
© 2006 Society for General Microbiology

In vivo hydrolysis of S-adenosylmethionine induces the met regulon of Escherichia coli

Bernadette L. LaMonte1,{dagger} and Jeffrey A. Hughes2

1 Department of Biology, Ursinus College, PO Box 1000, Collegeville, PA 19426, USA
2 Biology Department, Hanover College, PO Box 890, Hanover, IN 47243, USA

Correspondence
Jeffrey A. Hughes
hughes{at}hanover.edu


    ABSTRACT
 TOP
 ABSTRACT
 INTRODUCTION
 METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 
Regulation of methionine biosynthesis in Escherichia coli involves a complex of the MetJ aporepressor protein and S-adenosylmethionine (SAM) repressing expression of most genes in the met regulon. To test the role of SAM in the regulation of met genes directly, SAM pools were depleted by the in vivo expression of the cloned plasmid vector-based coliphage T3 SAM hydrolase (SAMase) gene. Cultures with in vivo SAMase activity were assayed for expression of the metA, B, C, E, F, H, J, K and R genes in cells grown in methionine-rich complete media as well as in defined media with and without L-methionine. In vivo SAMase activity dramatically induced expression between 11- and nearly 1000-fold depending on the gene assayed for all but metJ and metH, and these genes were induced over twofold. metJ : : Tn5 (aporepressor defective) and metK : : Tn5 (SAM synthetase impaired; produces <5 % of wild-type SAM) strains containing in vivo SAMase activity produced even higher met gene activity than that seen in comparably prepared cells with wild-type genes for all but metJ in a MetJ-deficient background. The SAMase-mediated hyperinduction of metH in wild-type cells and of the met genes assayed in metJ : : Tn5 and metK : : Tn5 cells provokes questions about how other elements such as the MetR activator protein or factors beyond the met regulon itself might be involved in the regulation of genes responsible for methionine biosynthesis.


Abbreviations: SAM, S-adenosyl-L-methionine; SAMase, SAM hydrolase

{dagger}Present address: Little Britain Veterinary Services, 281 Sleepy Hollow Road, Nottingham, PA 19362, USA.


    INTRODUCTION
 TOP
 ABSTRACT
 INTRODUCTION
 METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 
Methionine biosynthesis requires enzymes encoded by seven widely scattered genes of the met regulon divided between two short convergent pathways (Fig. 1Down; reviewed by Greene, 1996Down). The combined activities of MetA, MetB and MetC replace the hydroxyl group of L-homoserine with a thiol moiety to form L-homocysteine. Simultaneously, GlyA and MetF transfer and reduce one carbon from serine to tetrahydrofolate (THF), producing N5-methyl-THF. Either of two methyltransferases, the products of the metE and metH genes, transfers the methyl group from THF to homocysteine to form methionine. Methionine then either participates in protein synthesis or is condensed by the metK-encoded SAM synthetase with ATP to produce the ubiquitous nucleotide S-adenosyl-L-methionine (SAM).


Figure 1
View larger version (13K):
[in this window]
[in a new window]
 
Fig. 1. Biosynthesis of methionine and SAM in E. coli. Methionine is produced as the result of a two-branch pathway (see Greene, 1996Down). In one branch, the hydroxyl group of homoserine is converted to the thiol group of homocysteine by the sequential actions of the products of the metA, metB, and metC genes. In the other branch, a methylene group is transferred from serine to tetrahydrofolate (THF) and then reduced to form 5-methyl-THF by the products of the glyA and metF genes. The methyl group is then transferred from the THF by the products of either the metE or metH genes to the thiol group of homocysteine to produce methionine. Finally, methionine is condensed with ATP to produce SAM by SAM synthetase, the product of metK. According to the current model, the resulting SAM then binds to the MetJ aporepressor to repress expression of metA, B, C, E, F, K, R and glyA; only metJ and metH are not known to be repressed directly by the MetJ–SAM complex.

 
Mutating either of two genes produces constitutive expression of most genes in the met regulon and excess production and even export of methionine and its metabolites (Usuda & Kurahashi, 2005Down). Mutants of the more common type have decreased in vivo pools of SAM as a result of impaired SAM synthetase activity, and the defects map to metK (Greene et al., 1973Down; Hafner et al., 1977Down). Mutations of the second class map to metJ, and genetic and biochemical evidence identified the corresponding small protein as a DNA-binding aporepressor of met gene transcription (Su & Greene, 1971Down). These results suggested that a complex of MetJ and SAM binds a common nucleotide sequence in the promoters of target genes to prevent their transcription (Greene et al., 1970Down, 1973Down; Hobson & Smith, 1973Down). Identification of a consensus repressor binding site (‘met box’; Belfaiza et al., 1986Down) and crystallographic studies (Rafferty et al., 1989Down) all support this model. Genes most induced by defects in either metJ or metK include metA, B, C, E, F, K, L (as the downstream gene in the metBL operon) and metR (a regulatory protein that, by itself or when bound with homocysteine, regulates expression of a variety of genes in the met regulon to coordinate the activities of the two branches of the methionine biosynthetic pathway; again, see Greene, 1996Down). Cells thus regulate methionine biosynthesis through a feedback mechanism that monitors levels of SAM to activate met gene expression before the concentration of methionine decreases to levels that could impair protein synthesis. In addition to the MetJ–SAM repressor complex, other regulatory mechanisms, including the effects of the activator MetR protein (Urbanowski et al., 1987Down) and regulation of metA expression by heat shock (Biran et al., 1995Down) and of MetA stability by proteolysis (Biran et al., 2000Down), make regulation of elements of the met regulon highly complex.

Though well supported by genetic and biochemical data, the role of SAM has not been directly tested in vivo. This is due to three problems inherent in studies involving SAM in bacteria: SAM typically cannot cross bacterial cell membranes (including those of Escherichia coli), SAM synthetase inhibitors (e.g. methionine analogues such as ethionine) induce side effects unrelated to SAM deprivation (Alix, 1982Down; Pine, 1978Down), and known viable SAM synthetase mutants are leaky even under restrictive conditions (Hafner et al., 1977Down; Mulligan et al., 1982Down). We circumvented these difficulties by transforming cells with plasmid expression vectors containing the cloned coliphage T3 SAM hydrolase (SAMase) gene, resulting in in vivo SAMase activity not otherwise found in E. coli. This enzyme cleaves SAM into homoserine and 5'-methylthioadenosine, removes SAM from the cell, and inhibits a variety of SAM-related activities (Hughes et al., 1987Down; Posnick & Samson, 1999Down; Val & Cronan, 1998Down). Introducing SAMase activity should specifically remove the co-repressor without affecting the MetJ aporepressor and demonstrate the effect of reduced SAM concentrations on the expression of elements of the met regulon. Results from our assays of met gene expression in cells containing in vivo SAMase activity firmly support the role of SAM as the co-repressor. They also indicate that other factors – including and possibly in addition to MetR – play roles in influencing SAM-related met gene regulation.


    METHODS
 TOP
 ABSTRACT
 INTRODUCTION
 METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 
Bacterial strains and growth conditions.
All strains used were derived from the E. coli K-12 strain BW545 and are listed in Table 1Down; the YT complete and M9 defined media used are those of Miller (1972)Down. Assays of enzyme activities other than the expression of met : : lacZ fusions were performed on BW545. As described by Mulligan et al. (1982)Down, the GW strains were identified by screening for defects in methionine metabolism after Mud : : Ap,lac-mediated insertional mutagenesis of BW545, and the metJ : : Tn5 and metK : : Tn5 markers were inserted into the originally identified and stabilized met reporter strains by P1vir transduction. BWmJ and BWmK are metJ : : Tn5 and metK : : Tn5 derivatives of BW545 produced by P1vir transduction (Mares et al., 1992Down) of the respective markers from GW2529 and GW2533. They were identified by screening for resistance to 50 µg kanamycin ml–1 on YT agar plates after P1vir transduction and subsequent demonstration of elevated MetC activity using the assay described below. E. coli BW545, BWmJ (metJ : : Tn5) and BWmK (metK : : Tn5) lysogenic for bacteriophage {lambda}gt2 constructs containing Salmonella typhimurium met gene promoter : : lacZ fusions were assayed for metB ({lambda}Blac; Urbanowski & Stauffer, 1986Down), metE ({lambda}Elac; Plamann et al., 1988Down), metF ({lambda}Flac; Stauffer & Stauffer, 1988Down), metH ({lambda}Hlac; Urbanowski & Stauffer, 1989bDown), metJ ({lambda}Jlac; Urbanowski & Stauffer, 1986Down) and metR ({lambda}Rlac; Urbanowski & Stauffer, 1987Down) expression. In all cases, cells used to inoculate liquid cultures came from colonies raised overnight on agar plates inoculated with either freshly transformed cells or transformants stored in 15 % (v/v) glycerol at –70 °C and streaked for purification. Prior to assay, cultures were grown overnight with shaking at 32 °C in test tubes containing 3 ml liquid medium containing 100 µg ampicillin ml–1 and/or 15 µg tetracycline ml–1.


View this table:
[in this window]
[in a new window]
 
Table 1. E. coli K-12 strains used

Strain descriptions and storage conditions are given in Methods, and strains from G. Walker are described in Mulligan et al. (1982)Down.

 
Plasmids and transformations.
Plasmids were constructed, stored, and transformed into bacteria according to Maniatis et al. (1982)Down. The SAMase gene cloned into M13mp8 that produced M13hb1 (Hughes et al., 1987Down) was removed by EcoRI and HindIII digestion and ligated into pUC18 (Yanisch-Perron et al., 1985Down) to produce pHBF1UC. Because we questioned the ability of ampicillin to enforce long-term maintenance of this plasmid, pHBF1UC was cut with PstI and ligated to PstI-cut pBR322 (Bolivar et al., 1977Down) to form pHBBR2 and gain the tetracycline resistance that ensured plasmid maintenance. Also, the promoterless EcoRI–BamHI SAMase gene removed from M13hb1 was inserted into pBR322 to produce pHBF1BR, a stably propagated plasmid under ampicillin selection that directs weak SAMase expression, apparently from a cryptic promoter.

Enzyme assays.
Cystathionine synthetase (MetB) activity was determined in toluenized cells by the O-succinylhomoserine-dependent oxidation of reduced nicotinamide adenine dinucleotide, measured as A340 (Holloway et al., 1970Down; Kaplan & Flavin, 1966Down). Cystathionase (MetC) activity was assayed by the cystathionine-dependent reduction of Ellman's reagent, measured as A410 (Flavin, 1962Down; Holloway et al., 1970Down). beta-Galactosidase expression of met : : lacZ fusion genes was monitored by the rate of ONPG hydrolysis (Miller, 1972Down). SAMase was assayed by passing reaction mixes inoculated with 14COOH-SAM (Amersham Biosciences) over Affi-gel 601 (Bio-Rad) cis-diol affinity columns and determining the net percentage of total counts that failed to bind the column and were assumed to be in 14COOH-L-homoserine (Hughes et al., 1987Down). SAM synthetase activity was measured as the percentage of [35S]methionine (Amersham Biosciences) converted to labelled cis-diol (Affi-gel 601)-binding compounds (e.g. SAM and its metabolites S-adenosylhomocysteine, 5'-methylthioadenosine and 5'-methylthioribose) after incubation with toluenized cells under conditions for the SAM synthetase assay (Hafner et al., 1977Down; Hughes et al., 1987Down). Protein concentrations were determined by the Lowry method. In all cases, assays were conducted on at least five cultures from independently transformed cells, grown to stationary phase, performed according to minor modifications of published procedures, and quantified spectrophotometrically (with a Spectronic 21 or Beckman DU-64) or by liquid scintillation (Beckman LS5000TD) using Beckman ReadySafe scintillation cocktail. Statistical comparisons employed Student's t test, with P<0·05 indicating significant differences between paired samples.


    RESULTS
 TOP
 ABSTRACT
 INTRODUCTION
 METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 
Evidence of SAMase expression
Results throughout this study reflect the effect of in vivo SAMase expression directed either by pHBF1BR, a vector that results in the synthesis of a low level of SAMase activity (0·13 nmol min–1 mg–1 in whole-cell extracts), and pHBBR2, a vector that produces a higher level of SAMase expression (0·97 nmol min–1 mg–1 in whole-cell extracts). Cells with these vectors were compared against cells transformed with pBR322, in which SAMase activity was not detected. While cells containing pHBF1BR showed no obvious differences in growth rate or morphology when compared with negative controls, those with pHBBR2 grew more slowly (and with an especially pronounced and highly variable lag period), and individual cells often showed extreme filamentation, all as reported previously (Hughes et al., 1987Down).

Effect of in vivo SAMase expression in met wild-type cells in a complete medium
Three systems were used initially to survey the consequence on met gene expression of the in vivo expression of SAMase in E. coli K-12 BW545. The results of these assays are presented in Table 2Down.


View this table:
[in this window]
[in a new window]
 
Table 2. Effect of in vivo SAMase activity on met gene expression in met wild-type E. coli, comparing the effects of different genes and promoters from E. coli and S. typhimurium

All cultures were inoculated from independent colonies of freshly transformed cells and incubated overnight in YT medium containing 15 µg tetracyclineml–1 at 32 °C with shaking. Numbers represent means of values from at least five cultures for each condition. ND, Not determined.

 
Cystathionine synthetase (metB), cystathionase (metC) and SAM synthetase (metK) expression is repressed in the presence of methionine and wild-type metJ and metK gene products. We first monitored expression of these enzyme activities directly in cells with in vivo SAMase activity. This intracellular activity evoked substantial induction of MetB, C and K activities, suggesting that in vivo hydrolysis of SAM impaired the ability of the cells to repress these elements of the met regulon.

Secondly, we expressed SAMase in the BW545-derived GW strains that carry the lacZ gene fused behind the host's promoters for metA, metE and metF. The use of these met–lac fusion strains simplified the assays and expanded our survey to include another three genes. Introduction of SAMase activity into GW2517 (metA : : lacZ), GW2521 (metF : : lacZ) and GW2522 (metE : : lacZ) also greatly enhanced expression of these genes.

We then lysogenized BW545 with recombinant {lambda}gt2 phage carrying metB, E, F, H, J or R gene promoters from S. typhimurium fused to lacZ, constructs that have been used extensively to assay met gene expression in E. coli (see Methods for appropriate references). metB, E, F and R showed dramatic induction of activity while metJ and metH showed much smaller but still significant increases. Both the E. coli and S. typhimurium promoters for metE and metF responded similarly to the introduction of in vivo SAMase activity, although the S. typhimurium promoters directed a somewhat higher basal level of gene expression. While results from the cystathionine synthetase (MetB) assays showed less enhanced enzyme expression than those revealed by assays of MetB activity gauged through the S. typhimurium promoter met–lac fusions, in both cases the assays indicated substantial SAMase-mediated enzyme induction.

Because of the similarity of results seen using E. coli and S. typhimurium promoters, the simplicity of the reporter assays, and the fact that BW545 {lambda} lysogens are met wild-type strains while GW strains are methionine auxotrophs, we used these lysogens for all subsequent experiments. We deemed the use of met wild-type cells to be especially important. For example, defects in homocysteine biosynthesis in MetA strains or in its use in MetE or MetF strains would likely alter MetR-mediated gene activation (Byerly et al., 1990Down; Cowen et al., 1993Down; Mares et al., 1992Down; Urbanowski et al., 1987Down) and introduce complex and unpredictable effects beyond those provoked by SAMase expression.

Effect of in vivo SAMase expression in met wild-type cells in a methionine-limited medium
Because cells transformed with pHBBR2 grow poorly in defined media (data not shown), we routinely cultured cells in antibiotic-supplemented YT complete medium. On the other hand, it was necessary to grow cells in a methionine-deficient medium to determine the impact of methionine on met gene expression. To ensure reliable growth, cells were first cultured overnight in YT medium, washed and diluted 10-fold into YT medium, M9 minimal medium or M9 medium supplemented with L-methionine, and then cultured once again overnight. This regimen allowed growth in defined media and showed a reliable pattern of methionine-influenced gene expression (Table 3Down). With the exception of metH and metJ, the tested genes were significantly induced in cells grown without methionine in the absence of SAMase, while in vivo SAMase activity provoked a significant induction of expression for every gene tested under all conditions. The metA, B, E, F and R genes were most dramatically affected by either the absence of methionine from the culture medium or the presence of the SAMase expression vector. metC expression showed less dramatic results, although it is possible the different and possibly less sensitive method used to assay metC activity accounted in part for its apparently lower degree of sensitivity to either condition.


View this table:
[in this window]
[in a new window]
 
Table 3. Effect of in vivo SAMase expression in met wild-type E. coli in a methionine-limited medium

Cells were incubated overnight in YT medium containing 15 µg tetracycline ml–1 at 32 °C with shaking, washed, resuspended in 10x volume of the media indicated in the table (each containing 15 µg tetracycline ml–1) and incubated again overnight under the same conditions prior to enzyme assay. Numbers represent means of values from at least five cultures for each condition.

 
Effect of varying levels of SAMase activity on met gene expression
Table 4Down illustrates the results derived from met : : lacZ fusion strains expressing low or high levels of SAMase upon their transformation with pHBF1BR or pHBBR2, respectively. In all cases, genes that showed dramatic induction in cells containing high levels of in vivo SAMase activity (metB, metE, metF, and metR from Table 2Up) were induced to a lesser degree in cells expressing the nearly 10-fold lower levels of SAMase activity resulting from the introduction of pHBF1BR. Expression of metH and metJ, genes only weakly induced by pHBBR2-directed SAMase activity, was not significantly induced in cells expressing the lower levels of SAMase directed by transformation with pHBF1BR.


View this table:
[in this window]
[in a new window]
 
Table 4. Effect of varying levels of SAMase expression on met gene expression

All cultures were inoculated from independent colonies of freshly transformed cells and incubated overnight in YT medium containing 15 µg tetracycline ml–1 at 32 °C with shaking. Numbers represent means of values from at least five cultures for each condition.

 
Effect of in vivo SAMase expression in metJ : : Tn5 and metK : : Tn5 cells
Cells containing metJ or metK alleles that block or reduce expression of active proteins express met genes constitutively due to either the lack of the MetJ aporepressor or insufficient SAM to bind MetJ and repress the genes, respectively. We transformed previously reported metJ : : Tn5 (MetJ defective) and metK : : Tn5 (SAM synthetase impaired; a leaky construct that allows viability but greatly reduced synthesis of SAM) mutants produced in BW545 (Mulligan et al., 1982Down) with pHBBR2 to determine whether in vivo SAMase expression in met gene derepressed cells would have a significant effect on met gene expression. Table 5Down shows the results of these assays. Assays on metJ : : Tn5 cells revealed an approximately 1·5–4-fold increase in the activity of five of the six tested met genes in the presence of in vivo SAMase activity; metJ itself is the exception. Assays of met gene expression in the metK : : Tn5 background showed over 10-fold induction for metB, metE, metF and metR; the increases in metH expression resembled the lower levels of induction seen in all of the genes assayed in the MetJ cells, and metJ expression in this case was significantly enhanced.


View this table:
[in this window]
[in a new window]
 
Table 5. Effect of in vivo SAMase activity on met gene expression in MetJ and MetK E. coli

All cultures were inoculated from independent colonies of freshly transformed cells and incubated overnight in YT medium containing 15 µg tetracycline ml–1 at 32 °C with shaking. Numbers represent means of values from at least five cultures for each condition.

 

    DISCUSSION
 TOP
 ABSTRACT
 INTRODUCTION
 METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 
The dramatic induction of metA, B, C, E, F, K and R upon expression of in vivo SAMase activity in E. coli supports the model of a MetJ–SAM repressor complex binding met gene promoters to block their transcription. SAMase expression presumably decreases in vivo pools of SAM, removing the corepressor and preventing formation of the complex that normally represses these target genes. On the other hand, SAMase activity has a lesser effect on the two genes in this group not known to be regulated (at least directly) by the MetJ–SAM repressor complex, metH and metJ. Because cells were grown in a complete medium containing levels of methionine sufficient to prevent induction of the genes in control cells, these results provide positive evidence that, as expected from previous reports, SAM and not methionine or some other methionine-related metabolite is the active second element of the repressor complex. These data also complement previously published findings on the pattern of met gene expression in cells grown in methionine-deficient (hence, SAM-limited) media (Table 3Up; Pine, 1978Down); the relative sensitivity of met gene promoters to induction under SAM-limiting conditions (Table 4Up; Greene et al., 1973Down; Holloway et al., 1970Down); and in our metJ : : Tn5 (no aporepressor) and metK : : Tn5 (limited SAM synthesis) cells (Table 5Up; Greene et al., 1973Down; Su & Greene, 1971Down).

The current model explains the trends in expression of genes shown to be sensitive to SAM levels and/or the absence of the MetJ aporepressor, but understanding the low but significant SAMase-mediated induction of metJ requires more thought. metJ is autoregulated, as shown by the repressive effect of excess levels of the aporepressor on metJ expression with or without added SAM (Shoeman et al., 1985Down; Urbanowski & Stauffer, 1986Down). SAM enhances this autoregulatory activity, so the removal of SAM by SAMase may simply decrease the effectiveness of this regulation, requiring higher concentrations of MetJ to regulate its own gene. This concept is further supported by both the higher level of metJ expression in MetJ-deficient cells and the lack of further metJ induction in cells lacking the aporepressor (Table 5Up).

It is more difficult to explain the enhanced induction of all met genes in response to SAMase activity in metJ : : Tn5 and metK : : Tn5 backgrounds through the activity of the MetJ–SAM repressor alone. MetJ cells lack the MetJ aporepressor and, consequently, should fully and constitutively express genes regulated solely by the MetJ–SAM complex. However, cells bearing these Tn5-inactivated metJ and metK alleles – as well as other metJ and metK alleles that allow constitutive expression of met genes (data not shown) – consistently show enhanced expression of all tested met genes in the presence of in vivo SAMase activity with the single exception of metJ in MetJ-deficient cells noted above. Some or all of the enhanced met expression in cells with this particular metK : : Tn5 insertion may be due to residual SAM synthesis that occurs in these cells (e.g. DNA from these cells is fully Dam methylated and SAM is detectable at <5 % of wild-type levels; personal observations), and it would be interesting to test the expression of these genes under SAM-limiting conditions known to be lethal (Newman et al., 1998Down). At the same time the hyperinduction of met genes by SAMase suggests a need to dissect the impact of other factors known to regulate met gene expression under these conditions and to search for other sources of regulation.

The impact that SAMase-enhanced levels of MetR and/or homocysteine might have on met gene expression warrants the most careful consideration. MetR by itself activates metH expression (Urbanowski & Stauffer, 1989aDown; Urbanowski et al., 1987Down), and a MetR–homocysteine complex in the absence of the MetJ–SAM repressor is needed for efficient expression of metE (Plamann et al., 1988Down; Urbanowski et al., 1987Down). In addition, MetR cells are impaired to some degree in expression of metA and metF, each of which is downregulated when homocysteine levels increase, a result presumably of increased levels of the MetR–homocysteine complex and a concomitant decrease of the free MetR activator protein in the cell (Cowen et al., 1993Down; Mares et al., 1992Down). It is also possible that MetR, free or bound to homocysteine, is needed in some way for efficient expression of other met genes. Consequently, assuming that levels of MetR are normally sufficient only to induce submaximal expression of its target genes, the induction of metR directed by SAMase activity could boost expression of MetR-activated genes.

The above logic is contradicted by the observation that metR expression is also induced in metJ : : Tn5 and metK : : Tn5 cells lacking SAMase. These cells should therefore also exhibit enhanced met gene expression comparable to cells with high levels of SAMase if increased levels of MetR synthesis are responsible for the extra level of expression of these genes. SAMase also presumably enhances synthesis of homocysteine through induction of metA, B and C, and this could also play a role in enhancing met gene expression. Depending on the fate of any extra homocysteine produced as a consequence of SAMase expression, this should lead to a higher level of the MetR–homocysteine activator complex (and less free MetR). Increased levels both of MetR and homocysteine would presumably also occur in both MetJ- and MetK-deficient cells, both of which are induced for metA, B and C with or without in vivo SAMase activity. These and other conflicting and unresolved possibilities surrounding SAMase-mediated induced met gene induction can only be resolved by further investigation of the role of MetR activity and/or homocysteine levels, or by searching for other unidentified regulatory elements that influence met gene activity such as revealed by the role of SAM in the S-box system of Bacillus subtilis (Murphy McDaniel et al., 2003Down).

Explanations for this effect might also be found outside of the met regulon. One possible explanation for the increased expression of met genes in metJ- and metK-deficient cells would include any positive effect on gene transcription resulting from SAMase-mediated hypomethylation of chromosomal DNA. Methylation of promoter sequences, particularly in studies with -GATC- sequence methylation mediated by the Dam methylase, results in reduced transcription for some genes in E. coli (e.g. Stauffer & Stauffer, 1988Down; reviewed by Palmer & Marinus, 1995Down; Plumbridge, 1987Down). Reduction of SAM pools to levels below those needed for Dam- or Dcm-mediated DNA methylation has been achieved with the in vivo expression of recombinant SAMase (Hughes et al., 1987Down; Macintyre et al., 2001Down; Posnick & Samson, 1999Down). Should met gene promoters or those of genes whose activity impacts met gene expression be hypomethylated, or should any other consequence of hypomethylation affect DNA packing or structure, an increase in the transcription of their corresponding genes could result. Answers to these possibilities await studies with Dam- or Dcm-deficient strains.


    ACKNOWLEDGEMENTS
 
This work was supported by VanSant and Faculty Development grants from Ursinus College and by Faculty Development grants from Hanover College. We would like especially to acknowledge the help of former Ursinus College student Kyle Mansfield and former Hanover College students Katie Receuver and Sarah Palecek. E. coli K-12 strains BW545, GW2517, GW2521, GW2522, GW2529 and GW2533 were the kind gifts of Graham Walker, MIT, and the {lambda}gt2 met gene reporter phage constructs were gratefully received from George Stauffer, University of Iowa.


    REFERENCES
 TOP
 ABSTRACT
 INTRODUCTION
 METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 
Alix, J.-H. (1982). Molecular aspects of the in vivo and in vitro effects of ethionine, an analog of methionine. Microbiol Rev 46, 281–295.[Free Full Text]

Belfaiza, J., Parsot, C., Martel, A., de la Tour, C. B., Margarita, D., Cohen, G. N. & Saint-Girons, I. (1986). Evolution in biosynthetic pathways: two enzymes catalyzing consecutive steps in methionine biosynthesis originate from a common ancestor and possess a similar regulatory region. Proc Natl Acad Sci U S A 83, 867–871.[Abstract/Free Full Text]

Biran, D., Brot, N., Weissbach, H. & Ron, E. Z. (1995). Heat shock-dependent transcriptional activation of the metA gene of Escherichia coli. J Bacteriol 177, 1374–1379.[Abstract/Free Full Text]

Biran, D., Brot, N., Weissbach, H. & Ron, E. Z. (2000). Control of methionine biosynthesis in Escherichia coli by proteolysis. Mol Microbiol 37, 1436–1443.[CrossRef][Medline]

Bolivar, F., Rodriguez, R. L., Greene, P. J., Betlach, M. C., Heyneker, H. L., Boyer, H. W., Crosa, J. H. & Falkow, S. (1977). Construction and characterization of new cloning vehicles. II. A multipurpose cloning system. Gene 2, 95–112.[Medline]

Byerly, K. A., Urbanowski, M. L. & Stauffer, G. V. (1990). Escherichia coli metR mutants that produce a MetR activator protein with an altered homocysteine response. J Bacteriol 172, 2839–2843.[Abstract/Free Full Text]

Cowen, J. M., Urbanowski, M. L., Talmi, M. & Stauffer, G. V. (1993). Regulation of the Salmonella typhimurium metF gene by the MetR protein. J Bacteriol 175, 5862–5866.[Abstract/Free Full Text]

Flavin, M. (1962). Microbial transsulfuration: the mechanism of an enzymatic disulfide elimination reaction. J Biol Chem 237, 768–777.[Free Full Text]

Greene, R. C. (1996). Biosynthesis of methionine. In Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, 2nd edn, pp. 542–560. Edited by F. Neidhardt and others. Washington, DC: American Society for Microbiology.

Greene, R. C., Su, C.-H. & Holloway, C. T. (1970). S-adenosylmethionine synthetase deficient mutants of Escherichia coli K-12 with impaired control of methionine biosynthesis. Biochem Biophys Res Comm 38, 1120–1126.[CrossRef][Medline]

Greene, R. C., Hunter, J. S. V. & Coch, E. H. (1973). Properties of metK mutants of Escherichia coli K-12. J Bacteriol 115, 57–67.[Abstract/Free Full Text]

Hafner, E. W., Tabor, C. W. & Tabor, H. (1977). Isolation of a metK mutant with a temperature-sensitive S-adenosylmethionine synthetase. J Bacteriol 132, 832–840.[Abstract/Free Full Text]

Hobson, A. C. & Smith, D. A. (1973). S-adenosylmethionine synthetase in methionine regulatory mutants of Salmonella typhimurium. Mol Gen Genet 126, 7–18.[CrossRef][Medline]

Holloway, C. T., Greene, R. T. & Su, C. H. (1970). Regulation of S-adenosylmethionine synthetase in Escherichia coli. J Bacteriol 104, 734–747.[Abstract/Free Full Text]

Hughes, J. A., Brown, L. R. & Ferro, A. J. (1987). Expression of the cloned coliphage T3 S-adenosylmethionine hydrolase gene inhibits DNA methylation and polymamine biosynthesis in Escherichia coli. J Bacteriol 169, 3625–3632.[Abstract/Free Full Text]

Kaplan, M. M. & Flavin, M. (1966). Cystathionine {gamma}-synthetase of Salmonella. Catalytic properties of a new enzyme in bacterial methionine biosynthesis. J Biol Chem 241, 4463–4471.[Abstract/Free Full Text]

Macintyre, G., Atwood, C. V. & Cupples, C. G. (2001). Lowering S-adenosylmethionine levels in Escherichia coli modulates C-to-T transition mutations. J Bacteriol 183, 921–927.[Abstract/Free Full Text]

Maniatis, T., Fritsch, E. F. & Sambrook, J. (1982). Molecular Cloning: a Laboratory Manual. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.

Mares, R., Urbanowski, M. L. & Stauffer, G. V. (1992). Regulation of the Salmonella typhimurium metA gene by the MetR protein and homocysteine. J Bacteriol 174, 390–397.[Abstract/Free Full Text]

Miller, J. H. (1972). Experiments in Molecular Genetics, pp. 352–355. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.

Mulligan, J. T., Margolin, W., Krueger, J. H. & Walker, G. C. (1982). Mutations affecting regulation of methionine biosynthetic genes isolated by use of met-lac fusions. J Bacteriol 151, 609–619.[Abstract/Free Full Text]

Murphy McDaniel, B. A., Grundy, F. J., Artsimovitch, I. & Henkin, T. M. (2003). Transcription termination control of the S box system: direct measurement of S-adenosylmethionine by the leader RNA. Proc Natl Acad Sci U S A 100, 3083–3088.[Abstract/Free Full Text]

Newman, E. B., Budman, L. I., Chan, E. C., Greene, R. C., Lin, R. T., Woldringh, C. L. & D'Ari, R. (1998). Lack of S-adenosylmethionine results in a cell division defect in Escherichia coli. J Bacteriol 180, 3614–3619.[Abstract/Free Full Text]

Palmer, B. R. & Marinus, M. G. (1995). The dam and dcm strains of Escherichia coli: a review. Gene 143, 1–12.

Pine, M. J. (1978). Comparative physiological effects of incorporated amino acid analogs in Escherichia coli. Antimicrob Agents Chemother 13, 676–685.[Abstract/Free Full Text]

Plamann, L. S., Urbanowski, M. L. & Stauffer, G. V. (1988). Salmonella typhimurium metE operator-constitutive mutations. Gene 73, 201–208.[CrossRef][Medline]

Plumbridge, J. (1987). The role of dam methylation in controlling gene expression. Biochemie 69, 439–443.[Medline]

Posnick, L. M. & Samson, L. D. (1999). Influence of S-adenosylmethionine pool size on spontaneous mutation, Dam methylation, and cell growth of Escherichia coli. J Bacteriol 181, 6756–6762.[Abstract/Free Full Text]

Rafferty, J. B., Somers, W. S., Saint-Girons, I. & Phillips, S. E. V. (1989). Three-dimensional crystal structures of Escherichia coli met repressor with and without co-repressor. Nature 341, 705–710.[CrossRef][Medline]

Shoeman, R., Redfield, B., Coleman, T., Greene, R., Smith, A., Saint-Girons, I., Brot, N. & Weissbach, H. (1985). Regulation of methionine synthesis in Escherichia coli: effect of metJ gene product and S-adenosylmethionine on the in vitro expression of the metB, metL, and metJ genes. Biochem Biophys Res Commun 133, 731–739.[CrossRef][Medline]

Stauffer, G. V. & Stauffer, L. T. (1988). Salmonella typhimurium LT2 metF operator mutations. Mol Gen Genet 212, 32–36.

Su, C. H. & Greene, R. C. (1971). Regulation of methionine biosynthesis in Escherichia coli: mapping of the metJ locus and properties of a metJ+-metJ merodiploid. Proc Natl Acad Sci U S A 68, 367–371.[Abstract/Free Full Text]

Urbanowski, M. L. & Stauffer, G. V. (1986). Autoregulation by tandem promoters of the Salmonella typhimurium LT2 metJ gene. J Bacteriol 165, 740–745.[Abstract/Free Full Text]

Urbanowski, M. L. & Stauffer, G. V. (1987). Regulation of the metR gene of Salmonella typhimurium. J Bacteriol 169, 5841–5844.[Abstract/Free Full Text]

Urbanowski, M. L. & Stauffer, G. V. (1989a). Role of homocysteine in metR-mediated activation of the metE and metH genes in Salmonella typhimurium and Escherichia coli. J Bacteriol 171, 3277–3281.[Abstract/Free Full Text]

Urbanowski, M. L. & Stauffer, G. V. (1989b). The control region of the metH gene of Salmonella typhimurium LT2: an atypical met promoter. Gene 73, 193–200.

Urbanowski, M. L., Stauffer, L. T., Plamann, S. & Stauffer, G. V. (1987). A new methionine locus, metR, that encodes a trans-acting protein required for activation of metE and metH in Escherichia coli and Salmonella typhimurium. J Bacteriol 169, 1391–1397.[Abstract/Free Full Text]

Usuda, Y. & Kurahashi, O. (2005). Effects of deregulation of methionine biosynthesis on methionine excretion in Escherichia coli. Appl Environ Microbiol 71, 3228–3234.[Abstract/Free Full Text]

Val, D. L. & Cronan, J. E. (1998). In vivo evidence that S-adenosylmethionine and fatty acid synthesis intermediates are the substrates for the LuxI family of autoinducer synthases. J Bacteriol 180, 2644–2651.[Abstract/Free Full Text]

Yanisch-Perron, C., Vieira, C. J. & Messing, J. (1985). Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33, 103–119.[CrossRef][Medline]

Received 4 September 2005; revised 25 January 2006; accepted 27 January 2006.



This Article
Right arrow Abstract Freely available
Right arrow Full Text (PDF)
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Right arrow Citation Map
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Right arrow reprints & permissions
Citing Articles
Right arrow Citing Articles via CrossRef
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by LaMonte, B. L.
Right arrow Articles by Hughes, J. A.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by LaMonte, B. L.
Right arrow Articles by Hughes, J. A.
Agricola
Right arrow Articles by LaMonte, B. L.
Right arrow Articles by Hughes, J. A.


HOME HELP FEEDBACK SUBSCRIPTIONS ARCHIVE SEARCH TABLE OF CONTENTS
INT J SYST EVOL MICROBIOL MICROBIOLOGY J GEN VIROL
J MED MICROBIOL ALL SGM JOURNALS
Copyright © 2006 Society for General Microbiology.