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1 Michael Smith Laboratories and Departments of Biochemistry and Molecular Biology, Microbiology, and Immunology, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada
2 Infection, Immunity, Injury, and Repair Program, The Hospital for Sick Children, 555 University Avenue, Toronto, Ontario M5G 1X8, Canada
3 Department of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Ontario L8N 3Z5, Canada
4 Department of Medical Genetics and Microbiology, University of Toronto, Toronto, Ontario M5S 1A8, Canada
Correspondence
John H. Brumell
john.brumell{at}sickkids.ca
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ABSTRACT |
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These authors contributed equally to the work.
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INTRODUCTION |
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TOPABSTRACTINTRODUCTIONMETHODSRESULTSDISCUSSIONREFERENCES |
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). From mouse models, infection by serovar Typhimurium arises from bacteria crossing the intestinal epithelial barrier through M-cells or by luminal sampling of intestinal contents by CD18+ phagocytes (Jones et al., 1994; Vasquez-Torres et al., 1999). After breaching the epithelium, serovar Typhimurium goes on to colonize the liver and spleen of infected mice, residing within phagocytic cells at these locations (Richter-Dahlfors et al., 1997; Salcedo et al., 2001).
During the course of disease, serovar Typhimurium relies on two distinct type III secretion systems (T3SSs) to translocate bacterial-encoded virulence factors, termed effectors, directly from the bacterial cytosol into the host cell cytosol (Galan, 2001). The T3SS encoded by Salmonella pathogenicity island 1 (SPI-1) is required for invasion of epithelial cells, secreting several effectors that modulate host actin rearrangements and membrane ruffling to facilitate bacterial uptake (Bakshi et al., 2000; Friebel et al., 2001; Galan & Fu, 2000; Galan & Zhou, 2000; Hardt et al., 1998; Stender et al., 2000).
Upon entry into host cells, serovar Typhimurium resides in a membrane-bound compartment termed the Salmonella-containing vacuole (SCV) (Dunlap et al., 1991; Knodler & Steele-Mortimer, 2003; Takeuchi, 1967). Expression of a second T3SS, encoded on another pathogenicity island, SPI-2, is induced within the SCV and is essential for intracellular growth and virulence of serovar Typhimurium (Cirillo et al., 1998; Hensel et al., 1998; Ochman et al., 1996; Shea et al., 1996, 1999; Waterman & Holden, 2003). The SPI-2 T3SS has been shown to be required for many events characteristic of Salmonella infection, including the modulation of host endocytic traffic (Brumell et al., 2001b, 2002; Brumell & Grinstein, 2004; Garcia-del Portillo et al., 1993; Knodler & Steele-Mortimer, 2003) and evasion of host cell reactive oxygen species and inducible nitric oxide synthase (Chakravortty et al., 2002; Gallois et al., 2001; Vazquez-Torres et al., 2000, 2001).
SPI2-T3SS effectors are translocated across the SCV membrane and into the host cell (Cirillo et al., 1998; Miao & Miller, 2000; Waterman & Holden, 2003). One such effector, SifA, is essential for inducing the extension of long membranous tubules called Salmonella-induced filaments (Sifs) that emanate from the SCV along microtubule networks (Brumell et al., 2002; Garcia-del Portillo et al., 1993; Stein et al., 1996). Transfection of SifA-GFP into host cells is sufficient to mimic the phenotype of the translocated effector, causing aggregation of late endocytic compartments and the formation of Sif-like tubules (Brumell et al., 2001a, 2002). Membrane binding by SifA is mediated by a C-terminal hexapeptide membrane anchor containing an S-acylation site and a CAAX motif serving as a target for host cell prenylation (Boucrot et al., 2003; Reinicke et al., 2005). Sifs are decorated with markers typically found on late endocytic compartments including Rab7 and Lamp1, suggesting that their formation arises in part from the fusion of the SCV with these compartments (Brumell et al., 2003; Brumell & Grinstein, 2004; Garcia-del Portillo et al., 1993). Sifs are associated with rapidly replicating bacteria and their formation peaks at 8–10 h post-infection (Birmingham et al., 2005). Deletion of sifA significantly attenuates serovar Typhimurium virulence, impairs bacterial replication in macrophages, abrogates Sif formation and destabilizes the SCV, suggesting that the control of SCV membrane dynamics is crucial for pathogenicity (Beuzon et al., 2000, 2002; Brumell et al., 2001a; Stein et al., 1996). SifA has been shown to interact with the Rab7 GTPase and may promote the outward growth of Sifs by uncoupling Sif-associated Rab7 from Rab7-interacting lysosomal protein (RILP) (Harrison et al., 2004). Detachment from the centripetally directed dynein motor complex normally associated with RILP may allow Sif extension to proceed throughout the host cell (Harrison et al., 2004). SifA also interacts with a host protein termed ‘SifA and kinesin-interacting protein’ (SKIP). Recruitment of SKIP to the SCV negatively regulates the recruitment of the plus-end-directed kinesin to this compartment, thus facilitating the inward migration of the SCV towards perinuclear regions of the host cell (Boucrot et al., 2005).
Much less is known about the function of other SPI-2 effectors in comparison to SifA. SopD2 contributes to virulence in mice and acts cooperatively with SifA to promote Sif formation (Brumell et al., 2003; Jiang et al., 2004). Similar to SifA, SopD2 associates with Sifs and late endocytic compartments in infected cells, whether transfected or delivered by serovar Typhimurium itself (Brumell et al., 2003; Jiang et al., 2004). A GFP-fusion to the first 75 aa of SopD2 has been shown to target late endocytic vesicles (Brumell et al., 2003). The SPI-2 effector SseJ also localizes to SCVs and Sifs when ectopically expressed in infected cells. In contrast to SopD2, SseJ appears to inhibit Sif formation through its deacylase activity, which may modify Sif membrane composition (Birmingham et al., 2005; Ohlson et al., 2005). Other SPI-2 effectors, such as SspH2, target the host cytoskeletal system. SspH2 interacts with the actin-binding proteins filamin and profilin and may be involved in regulating the dynamics of actin assembly around the internalized SCV (Miao et al., 2003).
The mechanism by which effector proteins are recognized by T3SSs is not well understood. In general, it appears that effector proteins contain two signals, one that directs protein secretion out of bacteria and into the surrounding medium (secretion signal), and another that is required to further direct protein delivery specifically into host cells (translocation signal) (Ghosh, 2004; Sory et al., 1995). The secretion signal is contained within the 5' region of the gene, in a region encoding approximately the first 20 aa of the secreted substrate, though it is unclear whether the signal acts at the level of mRNA or protein (Anderson & Schneewind, 1997; Ghosh, 2004; Lloyd et al., 2001; Ramamurthi & Schneewind, 2003). Translocation signals appear to reside in regions downstream of secretion signals as well (Miao & Miller, 2000; Sory et al., 1995). In particular, members of the Salmonella translocated effector (STE) family, including the SPI-2 effectors SifA, SopD2, SspH2 and SseJ, have a conserved N-terminus of 
140 aa that mediates translocation into host cells (Brumell et al., 2000, 2003; Miao & Miller, 2000). Significantly, a conserved WEK(I/M)xxFF motif within the N-terminus of STE family members appears to be essential for effector translocation (Miao & Miller, 2000). Interestingly, a fusion of the first 150 aa of SopD2 to GFP retains the ability to localize to late endosomal/lysosomal compartments, indicating that the N-terminus is bifunctional and can mediate translocation and subcellular targeting (Brumell et al., 2003). However, the amino acid residues implicated in directing any of the STE family effectors to their specific subcellular host targets are currently unknown.
Many studies of bacterial effectors have relied on transfection to introduce epitope-tagged versions of effectors into host cells. This may be required due to the unavailability of specific antibodies for immunofluorescence, or low protein copy numbers that preclude their detection. For the most part, the activity and localization of effectors introduced by transfection correlates with that observed for bacterially translocated effectors, as exemplified by SifA (Brumell et al., 2001a, 2002). However, this is not always the case, as the effector SseG targets endosomal membranes, Sifs, SCVs and microtubules when delivered by bacteria (Kuhle & Hensel, 2002; Kuhle et al., 2004), yet localizes to the Golgi when transfected into the same cell type (Salcedo & Holden, 2003). This suggests that the context of effector protein delivery, such as the presence of other effectors, the influence of host responses and the nature of protein fusions, may be important for determining bacterial effector protein localization.
In this study, we performed functional analysis of SifA using deletion strategies to identify regions involved in effector secretion, translocation, localization and modulation of host endocytic trafficking. Although SifA belongs to the STE family, we show that domains throughout the protein, and not only within the N-terminus, are required for secretion and translocation of this effector. We also provide evidence that either N- or C-terminal domains can associate with and aggregate endocytic compartments provided the SifA C-terminal membrane targeting motif is present; however, neither domain is sufficient to generate Sif-like tubules by themselves. In addition, we have determined that residues found within the conserved WEK(I/M)xxFF motif of SopD2 are required for the effector to target late endocytic compartments. Interestingly, a cryptic Golgi-binding peptide containing the above motif is also present in a subset of STE effectors. Our studies demonstrate that STE effectors have domains that possess multiple functions. Furthermore, intracellular targeting motifs within bacterial effectors can be liberated by conditions that may alter protein folding, or by the context in which it is presented.
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METHODS |
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TOPABSTRACTINTRODUCTIONMETHODSRESULTSDISCUSSIONREFERENCES |
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), and 
sifA (Stein et al., 1996) and ssaR (Brumell et al., 2001a), isogenic mutants derived from SL1344. Escherichia coli strains DH5
or DH10B were used for all molecular cloning experiments. All bacteria were cultured in Luria–Bertani (LB) medium supplemented with chloramphenicol (50 µg ml–1), kanamycin (50 µg ml–1) or streptomycin (100 µg ml–1) where appropriate.
Plasmids used in this study are described in Table 1 and oligonucleotide sequences are described in Table 2. The plasmid pGFP-SifA was constructed by amplifying sifA from SL1344 chromosomal DNA and digesting the PCR product with KpnI and SacI, followed by ligating it into similarly digested pEGFP-C1. Small, in-frame, internal deletions were constructed in the sifA alleles carried on psifA-2HA and pGFP-SifA by an approach analogous to inverse PCR using the oligonucleotides as indicated in Table 1. Following amplification the PCR products were digested with SpeI and ligated in an intramolecular fashion to generate plasmids containing the desired deletion. Plasmid pGFP-SifA1–8 was constructed by ligating a 0.5 kb KpnI–SpeI fragment derived from pGFP-SifA8 to a 4.7 kb KpnI–SpeI fragment derived from pGFP-SifA1. Plasmid pGFP-SifA1–5 was constructed by ligating a 0.6 kb KpnI–SpeI fragment derived from pGFP-SifA5 to a 4.7 kb KpnI–SpeI fragment derived from pGFP-SifA1. Plasmid pGFP-SifA3–5 was constructed by ligating a 0.6 kb KpnI–SpeI fragment derived from pGFP-SifA5 to a 4.8 kb KpnI–SpeI fragment derived from pGFP-SifA3. Plasmid pGFP-SifA9–15 was constructed by ligating a 0.5 kb SacI–SpeI fragment from pGFP-SifA9 to a 4.7 kb SacI–SpeI fragment derived from pGFP-SifA15. Plasmid pGFP-SifA9–16 was constructed by ligating a 0.5 kb SacI–SpeI fragment from pGFP-SifA9 to a 4.7 kb SacI–SpeI fragment derived from pGFP-SifA16.
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). Plasmid pSopD2(W37P,F44R)-GFP, encoding SopD2 bearing W37P and F44R substitutions, was created by amplifying overlapping sopD2 fragments from psopD2-GFP template in two separate PCRs using primer pairs listed in Tables 1 and 2
. The overlapping segments were complementary to each other and contained the specific mutations. These fragments were subsequently pooled together and used as primers for another round of PCR with psopD2-GFP template to generate full-length sopD2 bearing the desired mutations. After digestion with BamHI and XhoI, the mutant gene was ligated into similarly treated pEGFP-N1 to form plasmid pSopD2(W37P,F44R)-GFP. A similar strategy was used to create pSopD2(aa37–44)-GFP, which encodes SopD2 with amino acids 37–44 deleted. However, for this deletion one primer from each primer pair was designed such that its 3' end annealed to the template on one side of the deletion, while the 5' end would anneal to the template DNA on the other side of the deletion (Ho et al., 1989).
Plasmids pSopD2(aa31–64)-GFP, pSopD2(aa31–46)-GFP, pSopD(aa31–64)-GFP, pSifA(aa25–58)-GFP, pSseJ(aa28–61)-GFP and pSspH2(aa28–61)-GFP encode peptide regions from SopD2, SopD, SifA, SseJ and SspH2, respectively, fused to the N-terminus of GFP. These were constructed using template DNA from psopD2-GFP, psopD-GFP, GFP-SifA (Table 1), or from wild-type serovar Typhimurium SL1344 chromosomal DNA as required. PCR amplicons were digested with BamHI and SalI and ligated into similarly digested pEGFP-N1.
Cell culture, infection of cultured cells and transfections.
HeLa and RAW264.7 cell lines were obtained from the ATCC, and were cultured in Dulbecco's modified Eagle's medium (DMEM) supplemented with fetal calf serum at 10 % (v/v). Cell cultures were incubated at 37 °C and 5 % CO2. Infections of HeLa cells were performed as described previously (Steele-Mortimer et al., 1999). HeLa cells were seeded at 5x104 cells per well in a 24-well cell culture plate containing coverslips 16–24 h before infection. The bacteria used for HeLa cell infections were exponential-phase Salmonella grown for 3 h in LB medium. Bacteria were pelleted at 10 000 g for 2 min and resuspended in PBS. The inoculum was diluted and added to HeLa cells at a m.o.i. of 100 : 1 at 37 °C for 10 min. The cells were then washed extensively with PBS, and growth medium containing 100 µg gentamicin ml–1 was added until 2 h post-infection, at which point the cells were washed and growth medium containing 10 µg gentamicin ml–1 was added for the duration of the experiment.
RAW264.7 cells were infected in triplicate with opsonized, stationary-phase bacteria. Bacterial cultures were grown for 16 h at 37 °C and then opsonized in 20 % normal human serum in DMEM for 25 min at 37 °C. RAW264.7 cells were inoculated with approximately 50 bacteria per cell followed by centrifugation for 5 min at 600 g. Infected cells were incubated for 20 min at 37 °C, 5 % CO2, washed three times with PBS and then cultured for 90 min in DMEM containing 100 µg gentamicin ml–1. Cells were then washed as above and incubated in DMEM containing 10 µg gentamicin ml–1 for an additional 20 h. At 2 and 20 h post-infection, infected cells were washed and then lysed in 0.25 ml 1 % Triton X-100, 0.1 % SDS in PBS. Lysates were diluted and plated in replicate onto LB agar for enumeration of c.f.u.
For transfection, HeLa cells were seeded at 5x104 cells per well into 24-well cell culture plates containing coverslips. After 16–24 h, between 0.5 and 1 µg DNA was used to transfect HeLa cells with Fugene 6 transfection reagent (Roche) according to the manufacturer's instructions. Following transfection, cells were cultured for a further 16–20 h. To enumerate the aggregation of Lamp1+ compartments or formation of Sif-like tubules, HeLa cells transfected with plasmids encoding various GFP-SifA deletion derivatives were fixed and immunostained for Lamp1 (see below). The numbers of transfected cells that contained Lamp1+ aggregates or Sif-like tubules were determined for at least 100 cells, and each experiment was performed at least three times. The assessment of swollen/aggregated Lamp1 compartments is based on a subjective increase in Lamp1+ compartment size. The mean±SD for these experiments is presented.
Immunofluorescence staining and microscopy.
Immunofluorescence staining was carried out as described previously (Coombes et al., 2003). Samples were fixed in 2.5 % paraformaldehyde/PBS solution (pH 7.4) for 10 min at 37 °C. Samples were then washed twice with PBS prior to being blocked and permeabilized in 10 % normal goat serum, 0.2 % saponin in PBS (SS-PBS) for 1–16 h. Primary and secondary antibodies were overlaid on coverslips in SS-PBS for 1 h, followed by three washes with PBS. Coverslips were mounted onto glass slides using DakoCytomation fluorescent mounting medium. Confocal microscopy was performed using a Zeiss Axiovert microscope (63x objective) and Zeiss LSM software. Images were imported into Adobe Photoshop 7 and assembled in Adobe Illustrator CS for labelling. For live cell imaging, HeLa cells were seeded onto 2.5 cm coverslips at 2.0x105 cells per well in a 6-well culture plate and transfected with 1.5 µg pSopD2(aa31–64)-GFP (Table 1) as described above. After approximately 16 h, seeded coverslips were transferred to RPMI medium (supplemented with L-glutamine, HEPES, no bicarbonate; Wisent). Cells were incubated with 5 µg brefeldin A (BFA) ml–1 for 70 min, followed by washout of the drug and replacement with fresh RPMI. Cells were imaged at 3 min intervals during the course of BFA treatment and during the recovery period following drug removal using a Leica DMIRE2 fluorescent microscope equipped with Openlab 3.1.7 software (Improvision).
Antibodies and reagents.
The anti-Lamp1 (H4A3) and anti-tubulin (E7) antibodies were obtained from the Developmental Studies Hybridoma Bank, developed under the auspices of the NICHD, National Institutes of Health, and maintained by the University of Iowa (Department of Biological Sciences, Ames, IA, USA). H4A3 was used at 1 : 50–1 : 100 for immunofluorescence. Rabbit anti-Lamp1 antibody (Affinity BioReagents) was used at 1 : 200 for immunofluorescence. Anti-tubulin antibody was used at a dilution of 1 : 5000 for Western blots. The anti-giantin antibody was used at 1 : 1000 for immunofluorescence and was obtained from Dr H. P. Hauri, University of Basel, Switzerland. The anti-HA epitope antibody (Covance) was used at 1 : 400 for immunofluorescence and 1 : 2000 for Western blots. Antibodies against DnaK and calnexin were obtained from Stressgen and used at 1 : 3500 and 1 : 2000, respectively, for Western blots. Alexa-568-conjugated goat anti-mouse and anti-rabbit antibodies were used at 1 : 200 and were purchased from Molecular Probes. Horseradish-peroxidase-labelled anti-mouse antibodies (Jackson Immunoresearch Laboratories) were used at a concentration of 1 : 5000.
In vitro secretion assays.
In vitro secretion assays were carried out as described previously (Coombes et al., 2004). Bacteria were cultured until stationary phase in a modified M9 minimal medium optimized for SPI2 gene expression and SPI2 type III secretion (Beuzon et al., 1999; Nikolaus et al., 2001). Overnight cultures of the required Salmonella strains grown in LB broth were washed twice in low-phosphate, low-magnesium medium (LPM) and then inoculated 1 : 50 in 3 ml LPM at pH 5.8. LPM medium consisted of 5 mM KCl, 7.5 mM (NH4)2SO4, 0.5 mM K2SO4, 38 mM glycerol (0.3 % v/v), 0.1 % Casamino acids, 8 µM MgCl2, 337 µM 
, and 80 mM MES (for titration to pH 5.8). Cultures were grown for 4–6 h at 37 °C with shaking, after which the OD600 was measured. Bacteria were pelleted by centrifugation for 2 min at 12 000 r.p.m. (4 °C) and the supernatant was passed through a 0.22 µm filter and precipitated with trichloroacetic acid (10 %, v/v, final concentration) at 4 °C for 4–16 h.
The trichloroacetic-acid-insoluble fraction was collected by centrifugation, washed with ice-cold acetone, and solubilized with a volume of 2x SDS-sample buffer (100 mM Tris/HCl, pH 6.8, 20 % glycerol, 4 % SDS, 0.002 % bromphenol blue and 200 mM dithiothreitol) adjusted according to the OD600 of the original culture. When necessary, solubilized secreted proteins were neutralized with an appropriate volume of non-titrated Tris. The bacterial pellet fraction from above was also dissolved in a volume of 2x SDS-sample buffer adjusted according to the OD600 of the original culture. Proteins from equivalent numbers of bacterial cells, as determined by OD600 readings, were separated on 10 % or 12 % SDS-polyacrylamide gels, transferred to nitrocellulose membranes, and then blocked in Tris-buffered saline containing 0.1 % (v/v) Tween 20 (TBST) and 5 % (w/v) powdered non-fat milk for 1 h at room temperature. Blots were incubated with mouse anti-HA monoclonal or mouse anti-DnaK monoclonal antibody in TBST plus 5 % non-fat milk. Secondary antibodies conjugated to horseradish peroxidase were used at a 1 : 5000 dilution in TBST for 1 h at room temperature. Antibody complexes were detected using enhanced chemiluminescence (Amersham Biosciences).
Host cell fractionation.
HeLa cells for fractionation were seeded at 2x106 per dish in 100 mm dishes, and were infected as described above. Cells were fractionated as previously described (Gauthier et al., 2000). In brief, cells were scraped and disrupted mechanically by passage through a 22-gauge needle in a homogenization buffer containing 250 mM sucrose, 3 mM imidazole and 0.5 mM EDTA (pH 7.4). The cell suspension was centrifuged at low speed (3000 g for 15 min at 4 °C) to pellet bacteria and unbroken cells (fraction designated ‘P’ in these studies), followed by ultracentrifugation (41 000 g for 20 min at 4 °C) to separate cellular membranes (designated ‘M’) from the cytosolic fraction (designated ‘C’). Each fraction was dissolved in 1x SDS sample buffer and loaded onto 10 % polyacrylamide gels for electrophoresis. Gels were transferred to PVDF membranes for Western blotting experiments.
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RESULTS |
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TOPABSTRACTINTRODUCTIONMETHODSRESULTSDISCUSSIONREFERENCES |
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; Miao & Miller, 2000), while the actual functional effector domain appears to reside in the C-terminal half of the protein (Hueck, 1998). SifA has been classified as a member of the STE family, as it contains a conserved N-terminal domain of approximately 140 aa that has been shown to be involved in translocation of another STE protein, SspH1 (Fig. 1a) (Miao & Miller, 2000). The C-terminus of SifA bears similarity to several Gram-negative bacterial proteins, and contains a prenylation motif required for membrane insertion (Fig. 1a) (Boucrot et al., 2003; Brumell et al., 2002; Reinicke et al., 2005). Addition of an internal, double haemagglutinin tag (2xHA; herein referred to as 2HA) between the conserved N-terminal type III secretion signal and the C-terminal portion of SifA resulted in a protein (SifA-2HA) that retained all known functions, including secretion, translocation, localization to endocytic compartments and induction of Sif formation (Brumell et al., 2002; Jiang et al., 2004). This suggested that SifA might follow the generalized model of T3SS effectors, and comprise at least two distinct domains, one implicated in its delivery into host cells, and the other in modulating host cell targets.
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). Plasmids encoding these deletion mutants were transformed into a sifA strain of serovar Typhimurium to determine their effects on the defective replication of this strain previously described in the RAW264.7 macrophage cell line (Brumell et al., 2001a). It was found that all deletions constructed in psifA-2HA resulted in reduced replication compared to the control strain containing the unmodified parental plasmid, which displayed expected replication levels within host cells (Fig. 2a). The psifA-2HA deletion plasmids were also unable to complement Sif formation and SCV maintenance in a chromosomal sifA strain when used to infect HeLa cells for 10 h (results not shown). Similarly, none of the sifA-2HA deletion alleles acted as dominant negatives on Sif formation and SCV maintenance when expressed from wild-type serovar Typhimurium used to infect HeLa cells (results not shown).
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sifA strain to levels comparable to the sifA strain containing unmodified psifA-2HA may be due to defects in secretion or translocation of each SifA-2HA mutant. Using an in vitro secretion assay optimized for SPI-2 gene expression and SPI-2 T3SS secretion, we observed that the majority of deletions to SifA abrogated its secretion [Fig. 2b; compare bacterial pellet fractions (P) with corresponding supernatants (S) containing secreted proteins]. Western blotting using the anti-HA antibody showed that each SifA-2HA mutant was synthesized in the bacteria (Fig. 2b), confirming that our secretion results were not due to a lack of mutant protein being expressed. We note that limited amounts of mutant SifA-2HA were secreted from bacteria transformed with psifA-2HA11, psifA-2HA15 and psifA-2HA16 compared to control bacteria carrying psifA-2HA (Fig. 2b). Interestingly, the mutant protein SifA-2HA2, bearing a deletion of its conserved WEK(I/M)xxFF translocation domain common to STE effectors (Miao & Miller, 2000), was also secreted by bacteria into the culture supernatant.
To detect the delivery of effector protein into host cells, we performed sensitive immunoblot-based translocation assays in HeLa cells using both wild-type serovar Typhimurium SL 1344 and a ssaR strain deficient in SPI-2 type III secretion. Fig. 2(c) shows a representative assay testing the translocation of a SifA-2HA deletion derivative, namely the SifA-2HA2 mutant. Whereas wild-type SifA-2HA was delivered by the wild-type strain and could be detected in the host cell membrane fraction (M) by immunoblotting, SifA-2HA2 was not. As expected, neither SifA-2HA nor SifA-2HA2 was translocated from the ssaR strain (SPI-2 T3SS defective) (Fig. 2c). The two signals that appear upon detection of wild-type SifA-2HA in lane 1 (Fig. 2c) likely represent post-translationally modified and unmodified forms of SifA-2HA. It is established that SifA undergoes prenylation and S-acylation within the host (Reinicke et al., 2005). Hence, the untranslocated SifA-2HA remaining within bacteria due to the SifA-2HA2 mutation or the lack of a functional SPI-2 T3SS (ssaR) was detected as the sole lower molecular mass signals common to lanes 4, 7 and 10 (Fig. 2c). The remaining SifA-2HA mutants were also tested using this immunoblot-based translocation assay, and were not translocated. This included mutants with deletions at the C-terminus outside of the conserved STE family protein translocation region (data not shown). Furthermore, immunofluorescence microscopy revealed that none of the SifA-2HA deletion proteins were translocated into host HeLa cells at 10 or 18 h postinfection when expressed from either a sifA or a wild-type strain (data not shown). Collectively, these results show that regions throughout SifA, and not only within its N-terminus, are required for its secretion and/or translocation.
N- and C-terminal domains of SifA each have roles in targeting and/or aggregation of Lamp1+ compartments, but cannot induce Sif-like tubule formation by themselves
Transfection of SifA-GFP results in its association with Lamp1+ vesicles that induces their aggregation and filamentation into Sif-like tubules, similar to bacterial delivery of the effector (Boucrot et al., 2003; Brumell et al., 2001a, 2002). A previous study has identified an 11 aa membrane-anchoring motif at the C-terminus of SifA (Boucrot et al., 2003). Fusion of this motif to a cytosolic protein, GFP-SifB, was sufficient to target the protein to membrane compartments when transfected into HeLa cells (Boucrot et al., 2003). However, it is not clear whether these compartments were Lamp1+ and thus indicative of the actual subcellular targets of SifA.
To determine the domains in SifA involved in targeting and aggregating Lamp1+ vesicles, as well as in inducing Sif-like tubule formation, we constructed a GFP-fusion to the N-terminus of SifA (GFP-SifA). Several deletions to SifA were also constructed for localization studies in HeLa cells. Specifically, we tested the fusions GFP-SifA9–15 (lacking aa 185–324 of wild-type SifA), GFP-SifA9–16 (lacking the C-terminus of SifA from aa 185), GFP-SifA1–8 (lacking aa 2–184), GFP-SifA1–5 (lacking aa 2–101), and GFP-SifA3–5 (lacking aa 42–101) (Fig. 3a). GFP-SifA9–15 was designed to retain the C-terminal amino acids involved in membrane anchoring (Boucrot et al., 2003). HeLa transfectants were immunostained for Lamp1 to visualize colocalization and/or aggregation effects of each GFP-SifA fusion on late endocytic compartments.
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). In addition, the fusion protein induced the formation of Sif-like tubules (Fig. 3b, d). These phenotypes elicited by GFP-SifA were consistent with those observed previously using a similar construct (Boucrot et al., 2003), and with SifA-GFP (Brumell et al., 2001a), where GFP was fused to the C-terminus of the effector. Hence, the functionality of both SifA fusions was similar (Fig. 3c). GFP-SifA9–15 also produced a similar phenotype to the wild-type control (Fig. 3b, c), indicating that much of the C-terminus of SifA (from aa 185 to aa 324) is not required for binding and aggregating Lamp1+ compartments. However, GFP-SifA9–15 could not induce the formation of Sif-like tubules. Removal of the SifA membrane-targeting motif from GFP-SifA9–15, resulting in GFP-SifA9–16 (Fig. 3a), rendered the protein distributed throughout the cytosol (Fig. 3b). Furthermore, GFP-SifA9–16 did not induce aggregation of Lamp1+ vesicle activities, similar to GFP transfectant controls (Fig. 3b, c). These results show that the N-terminal half of SifA is able to aggregate Lamp1+ compartments provided the minimal SifA membrane-anchoring motif is present.
We next examined the effects of N-terminal deletions to SifA using GPF-SifA constructs. Both microscopy and quantification showed that GFP-SifA1–8 efficiently produced Lamp1+ vacuolation and aggregation (Fig. 3b, c). However, despite this ability, GFP-SifA1–8 was not localized exclusively to Lamp1+ vesicles, and appeared in the cytosol as well (Fig. 3b). GFP-SifA1–5, which contained additional SifA N-terminal residues (aa 102–184) that were excluded from GFP-SifA1–8 (Fig. 3a), also presented a cytosolic distribution with little colocalization with Lamp1+ vesicles (Fig. 3b). Curiously, GFP-SifA1–5 did not induce significant aggregation of Lamp1+ compartments as GFP-SifA1–8 did, in comparison to the negative control GFP (Fig. 3c). Significantly, these results indicate that the C-terminal half of SifA, which includes the membrane-targeting motif, is not sufficient to properly target and/or aggregate late endocytic compartments, and that determinants within the N-terminus are required as well.
Interestingly, GFP-SifA3–5 appeared concentrated at a region adjacent to the nucleus and did not colocalize with Lamp1+ compartments (Fig. 4). HeLa cells expressing GFP-SifA3–5 had significantly fewer Lamp1+ aggregates, even compared to cells transfected with the unmodified GFP vector (Fig. 3c). In contrast to both wild-type SifA-GFP and GFP-SifA, none of the GFP-SifA deletions could induce the formation of Sif-like tubules upon transfection of HeLa cells (Fig. 3d). Overall, our results suggest that both the N- and C-terminal domains of SifA contribute to its localization to, and aggregation of, Lamp1+ compartments. Furthermore, tubulation of Lamp1+ compartments into Sif-like tubules appears to require a complete SifA protein.
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3–5 targets the Golgi complex3–5 was strikingly different from that of the other GFP-SifA constructs. The fusion protein did not colocalize with Lamp1+ compartments, and was found predominantly at a juxtanuclear position and on vesicles surrounding the nucleus (Fig. 4, top panels). The concentration of GFP-SifA3–5 adjacent to the nucleus suggested the fusion might be preferentially targeted to the Golgi apparatus. Indeed, the majority of GFP-SifA3–5 colocalized with giantin (Fig. 4, bottom panels), an established marker of the Golgi (Linstedt & Hauri, 1993; Seelig et al., 1994). In contrast to GFP-SifA1–5, which was predominantly in the cytosol (Fig. 3b), the Golgi-targeting GFP-SifA3–5 contained the first 41 aa of SifA (Fig. 3a). This suggested that determinants within the first 41 residues of SifA might redirect its subcellular localization in certain conditions, such as in the context of deletion mutations.
A conserved N-terminal motif in SopD2 is involved in membrane association and is sufficient to target the Golgi
Similar to SifA, the SPI-2 effector SopD2 localizes to Lamp1+ endocytic compartments when transfected as a GFP-fusion, or when delivered by the serovar Typhimurium T3SS (Brumell et al., 2003). We verified that such localization could occur simultaneously in HeLa cells by first transfecting SopD2-GFP and then infecting the cells with a sopD2 serovar Typhimurium mutant delivering plasmid-encoded SopD2-2HA. Both SopD2-GFP and SopD2-2HA were colocalized with Lamp1+ vesicles (Fig. 5b, middle row panels). Thus, SopD2 fusions to either epitope tag did not disrupt its targeting of late endocytic compartments.
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) (Brumell et al., 2003). Hence, both translocation and subcellular targeting domains are found within the same terminus of the protein. Partial protein sequence alignment of the N-termini of STE family members SifA, SopD2, SseJ, SspH2 and SopD shows the conserved WEK(I/M)xxFF motif previously identified as an important signal for effector translocation (Miao & Miller, 2000). From the effectors used in our protein alignment, the consensus sequence of this conserved motif is W(E/D)(K/R)xxxF; however, we will continue to use the previously established consensus of WEK(I/M)xxFF for discussion purposes (Miao & Miller, 2000). Full-length protein sequence alignments (data not shown) indicate that the region encompassing this motif is one of the most conserved amongst STE members; hence we chose to examine this region in SopD2 (WDRFKDCF) (Fig. 5a) to determine its role, if any, in protein localization. GFP fusions to SopD2 bearing a complete deletion of its WEK(I/M)xxFF motif [SopD2(aa37–44)-GFP] or simultaneous substitutions of W37P and F44R at highly conserved positions [SopD2(W37P,F44R)-GFP] were constructed and used in HeLa transfection studies. W37P and F44R substitutions were selected to disrupt a predicted helical conformation that spans the WEK(I/M)xxFF motif (Brumell et al., 2001a).
Confocal microscopy showed that wild-type SopD2-GFP colocalized with Lamp1+ vesicles (Fig. 6a, top panels), as previously observed (Brumell et al., 2003). In contrast, both SopD2(aa37–44)-GFP and SopD2(W37P,F44R)-GFP appeared distributed throughout the cytosol and did not localize to Lamp1+ compartments (Fig. 6a, middle and bottom panels). Hence, residues within the conserved WEK(I/M)xxFF motif of SopD2 are required for membrane association to Lamp1+ compartments.
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) was constructed and transfected into HeLa cells. Transfected SopD2(aa31–64)-GFP did not colocalize with Lamp1+ vesicles, nor with SopD2-2HA translocated into the same cell by bacteria (Fig. 5b, bottom panels). Interestingly, SopD2(aa31–64)-GFP was concentrated to a juxtanuclear position (Fig. 5b, bottom left panel; Fig. 6b, top left panel), similar to GFP-SifA3–5 (Fig. 4). However, the localization of SopD2(aa31–64)-GFP was much more distinct, and did not appear on other vesicles surrounding the nucleus as observed with GFP-SifA3–5. The position of SopD2(aa31–64)-GFP suggested it targeted the Golgi, which was confirmed by its extensive colocalization with the Golgi markers giantin (Fig. 6b, top panels) and GM130 (data not shown). Treatment of HeLa cells expressing SopD2(aa31–64)-GFP with the Golgi-disrupting drug BFA resulted in the dispersal of fluorescent signal throughout the cytosol (Fig. 6c). The effects of BFA were reversible, with SopD2(aa31–64)-GFP signal returning to its original position following washout of the drug (Fig. 6c). A GFP fusion to a smaller SopD2 peptide composed of only 16 aa (aa 31–46) and retaining the residues WDRFKDCF was also sufficient to specifically target the Golgi, as shown by its colocalization with giantin (Fig. 6b, bottom panels). SopD2(aa31–46)-GFP also did not colocalize with Lamp1+ compartments (data not shown), similar to SopD2(aa31–64)-GFP. Overall, these results show that residues within the conserved WEK(I/M)xxFF motif of SopD2 are involved in directing this STE family member to endocytic vesicles. Furthermore, SopD2 peptides containing this conserved motif can target the Golgi.
A conserved N-terminal peptide present in a subset of STE effectors can target the Golgi
To determine the subcellular localization characteristics of WEK(I/M)xxFF motif-containing peptides from other STE family members, GFP-fusions to such peptides from SseJ, SspH2, SopD2 and SifA were constructed (Fig. 7). Like SifA, the localization of each of these STE effectors upon transfection has already been established. SseJ localizes to globular membranous Lamp1+ compartments that have a composition similar to that of SCVs (Ruiz-Albert et al., 2002), SspH2 associates with regions of active actin polymerization such as membrane ruffles (Miao et al., 2003), and SopD, a SPI-1 effector, appears to be cytosolically distributed (Brumell et al., 2003).
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). Colocalization with giantin confirmed that SspH2(aa28–61)-GFP and SseJ(aa28–61)-GFP could be targeted to the Golgi (Fig. 7a, b), although not to the same extent as SopD2(aa31–64)-GFP (Fig. 6b). Interestingly, SopD(aa31–64)-GFP was found nearly exclusively within the nucleus (Fig. 7c). Although some of the fusion was also observed in a region next to the nucleus, it did not exhibit significant colocalization with the Golgi marker giantin (Fig. 7c). SifA(aa25–58)-GFP was distributed in a network surrounding the nucleus, with only limited colocalization with giantin (Fig. 7d). Much of the SifA(aa25–58)-GFP signal was extended beyond that of giantin; however, its perinuclear distribution did not significantly colocalize with an endoplasmic reticulum marker, protein disulphide isomerase (data not shown).
Although both SifA(aa25–58)-GFP and GFP-SifA3–5 contained the conserved WEK(I/M)xxFF motif, we noted that they each had a distinct localization upon transfection (compare Figs 4 and 7d). This suggested that, while the WEK(I/M)xxFF can function to direct subcellular targeting, the overall context of the protein in which this motif appears may play an important role in influencing its ultimate localization. In support of this, GFP-SifA1, with amino acids 2–21 of SifA deleted but retaining the conserved WEK(I/M)xxFF motif, localized exclusively to the nucleus upon transfection and was not colocalized with any Lamp1+ compartments (Fig. 7e). Overall, our results show that a subset of STE effectors contain N-terminal motifs that can target the Golgi. Furthermore, mutations such as deletions may liberate other cryptic subcellular localization motifs in bacterial effectors.
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DISCUSSION |
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TOPABSTRACTINTRODUCTIONMETHODSRESULTSDISCUSSIONREFERENCES |
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; Boucrot et al., 2005; Brumell et al., 2001a, b, 2002; Harrison et al., 2004; Stein et al., 1996). As such, it is expected that several functional domains would exist within this effector to regulate its activities. Evidence for this can be seen with the SifA-2HA construct used in our studies. This fusion consists of a 20 aa insertion (encoding tandem HA epitopes) following amino acid 136 of wild-type SifA (Brumell et al., 2002). That this protein is translocated efficiently and permits a sifA mutant to induce Sif formation suggested, in previous studies, that SifA consists of at least two domains approximated by N- and C-terminal halves that could be separated by the 2HA insertion (Brumell et al., 2002).
To date, the best-characterized SifA region is its membrane-anchoring C-terminus, containing a 6 aa sequence with homology to CAAX and Rab geranylgeranyl transferase prenylation motifs (Boucrot et al., 2003; Reinicke et al., 2005). Biochemical studies have shown that this motif is a site for isoprenoid attachment, with an adjacent cysteine residue modified by S-acylation (Reinicke et al., 2005). Fusion of an 11 aa C-terminal SifA sequence containing this CAAX motif is sufficient to target a GFP fusion to uncharacterized membranes upon transfection of HeLa cells (Boucrot et al., 2003). Our results extend the above studies and demonstrate that the N-terminal half of SifA is sufficient to mediate targeting and aggregation of Lamp1+ compartments, provided it is fused to the SifA prenylation motif. Moreover, our results also show that the C-terminal half of SifA containing the membrane-anchoring motif is not sufficient for localizing the effector to Lamp1+ compartments. This was evident with GFP-SifA1–5 and GFP-SifA3–5, each having reduced association with Lamp1+ vesicles despite retaining the C-terminal membrane anchor. This indicates that SifA targeting to appropriate host cell compartments is a combined result of membrane anchoring via prenylation and by other regions distributed throughout SifA, including determinants found within the N-terminus. Collectively, this would provide an effective concentration of SifA at the site of action and induce the aggregation of Lamp1+ compartments.
GFP-SifA truncation derivatives that retained the ability to aggregate Lamp1+ vesicles could not tubulate these compartments, in contrast to unmodified GFP-SifA. Thus both N- and C-terminal domains of SifA are required for the formation of Sif-like tubules. To date, several studies have linked SifA effector function to mediating interactions with microtubule motors and/or motor adaptors to control the membrane dynamics of SCVs and/or Sifs (Boucrot et al., 2005; Guignot et al., 2004; Harrison et al., 2004). Therefore the effector domain(s) of SifA that regulate these activities may span regions encompassing the entire protein, as compared to the more discrete C-terminal effector domains found in other translocated bacterial proteins (Hueck, 1998).
Our studies also demonstrate that a completely intact SifA is required for its proper secretion and translocation. SifA translocation appears to involve regions in addition to those described for other effectors. Deletions in the N-terminal 140 aa disrupted translocation, consistent with SifA possessing a proteinaceous N-terminal or 5' mRNA-encoded secretion signal and a chaperone-dependent signal (Ramamurthi & Schneewind, 2003). However, our results are also consistent with regions downstream of amino acid 140 being required for SifA translocation, lying beyond the N-terminal translocation domain common to the STE family (Miao & Miller, 2000). Other bacterial effectors have been characterized to have translocation signals localized in their C-termini, including the serovar Typhimurium SPI-1 effector SipC (Chang et al., 2005) and translocated intimin receptor (Tir) from enterohaemorrhagic E. coli (EHEC O157 : H7) (Allen-Vercoe et al., 2005).
Previous results have shown that various truncated SifA fusions to CyaA were not translocated into host cells and tended to be unstable (Miao & Miller, 2000). For the most part, the deletions used in our study did not appear to negatively affec
-tubulin is a cytoplasmic protein.
