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Center for Infectious Disease Research and Vaccinology, South Dakota State University, Brookings, SD 57007, USA
Correspondence
Philip R. Hardwidge
hardwidg{at}gmail.com
| ABSTRACT |
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| INTRODUCTION |
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Despite its role as a major ETEC virulence determinant, only recently has significant effort been put into understanding how LT is secreted from the bacterium during infection (Tauschek et al., 2002
). Earlier efforts failed to identify a protein secretory pathway, leading to the belief that ETEC release LT only during lysis (Wai et al., 1995
). It was later realized that a type II secretion system, homologous to that used by V. cholerae to transport cholera toxin, is used to transport LT (Tauschek et al., 2002
). As LT does not remain in the ETEC periplasm, but is instead found on the cell exterior (Horstman & Kuehn, 2000
), the involvement of outer-membrane vesicles (OMVs) in providing a point of display for LT was then recognized (Horstman & Kuehn, 2002
).
Gram-negative bacteria produce OMVs (Kesty et al., 2004
), which in pathogenic strains are used to secrete virulence genes and proteins. Shiga toxins are delivered from E. coli O157 : H7 into the host epithelium through OMVs (Kolling & Matthews, 1999
) and Helicobacter pylori releases the VacA toxin through OMV budding (Fiocca et al., 1999
; Ilver et al., 2004
). In addition to transporting virulence proteins, OMVs serve an important role in disseminating bacterial DNA. Pseudomonas aeruginosa OMV production increases in response to bacterial stress, and DNA isolated from OMVs can be expressed in other pathogenic isolates, implicating OMVs as an important mechanism of horizontal gene transfer (Kadurugamuwa & Beveridge, 1997
). LT is highly enriched in ETEC vesicles (Horstman & Kuehn, 2000
), whose endocytosis is dependent on cholesterol-rich lipid rafts found on the host epithelial surface (Kesty et al., 2004
). OMVs derived from ETEC, but not from non-pathogenic E. coli strains, associate with host cells in a time- and receptor-dependent manner (Kesty et al., 2004
), suggesting that OMV production and protein content may be a regulated component of ETEC pathogenesis. Release of OMVs also enhances survival during bacterial stress or during accumulation of misfolded proteins (McBroom & Kuehn, 2007
).
How the protein content of bacterial OMVs is regulated is unknown. Vesiculation may be a directed process as observed in eukaryotes, or, more likely, deformation of the bacterial envelope due to particular localization of the protein secretion machinery may focus secretion loci (Kesty et al., 2004
). The leoA (labile enterotoxin output) gene was discovered in a mutational screen designed to find ETEC genes that confer the ability to invade intestinal cells in vitro. An in-frame deletion in leoA resulted in diminished LT secretion and a lack of fluid accumulation in a rabbit ileal loop model of infection, apparently due to a failure to secrete LT from the bacterial periplasm (Fleckenstein et al., 2000
). E. coli possessing the pathogenicity island in which leoA is encoded secrete LT, while E. coli lacking the pathogenicity island retain LT in the periplasm (Fleckenstein et al., 2000
). LeoA is homologous to proteins from bacterial secretion apparatuses, including EpsE from V. cholerae, which is required for cholera toxin secretion (Fleckenstein et al., 2000
). In this study, we present data from experiments designed to characterize the biochemical activities of LeoA, the role of its GTP-binding domain in LT secretion, and its interaction with ETEC outer-membrane proteins.
| METHODS |
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leoA mutants.
leoA strain (Fleckenstein et al., 2000
G). This PCR product was cloned into PCR2.1-TOPO and then subcloned into pFLAG-CTC for complementation studies and into pET28a for protein purification.
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G mutant was purified under denaturing (6 M guanidine.HCl), but otherwise identical conditions, and refolded by stepwise dialysis into storage buffer.
Quantification of GTPase activity.
The Enzchek Phosphate assay kit (Molecular Probes) was utilized according the manufacturer's specifications. A 1 µg sample of purified His-LeoA or His-LeoA
G was added to 1 ml reaction mixtures preincubated for 10 min at 22 °C that contained 1x reaction buffer, MESG substrate and 1 U purine nucleoside phosphorylase. Absorbance at 360 nm was monitored as a function of time.
Quantification of LT secretion.
Subcultures from frozen bacterial stocks were grown overnight in CYE-glucose medium at 37 °C with vigorous aeration and pelleted by centrifugation at 16 000 g for 15 min. The resulting clarified bacterial supernatants were frozen at –80 °C. To measure LT retained in the periplasm, bacterial pellets were washed twice in 1 ml cold phosphate-buffered saline (PBS) and resuspended in an equal volume of buffer containing 25 mM Tris/HCl (pH 8.0), 10 mM EDTA, lysozyme (3 mg ml–1), polymyxin B (2 mg ml–1), and phenylmethylsulfonyl fluoride (8 µg ml–1). After incubation on ice for 10 min, cell pellets were subjected to repeated freeze–thaw cycles. After centrifugation (16 000 g, 15 min, 4 °C), clarified lysates were frozen at –80 °C until used in LT assays. LT quantification was performed with a mixed-ganglioside ELISA (Horstman & Kuehn, 2002
).
Outer-membrane protein (OMP) isolation.
OMPs were isolated as described by Achtman et al. (1983)
. Subcultures (10 ml) from frozen bacterial stocks were grown overnight in SOB at 37 °C with vigorous aeration and pelleted by centrifugation (16 000 g, 15 min, 4 °C). Bacterial pellets were washed twice in 1.5 ml 10 mM Tris/HCl (pH 8.0), resuspended a third time in this buffer, and lysed by sonication. Whole cells were removed by centrifugation (10 000 g, 10 min, 4 °C), the supernatants were aspirated into ultratubes, and Sarkosyl was added to 2 % (w/v). This mixture was incubated at room temperature for 30 min and then centrifuged (38 000 g, 1 h, 4 °C) to pellet the membrane proteins. The membrane protein pellet was washed with PBS, recentrifuged, and resuspended in sterile water. A 25 µg sample of protein was mixed with SDS-loading buffer and separated by 10 % SDS-PAGE.
Electron microscopy analysis of OMVs.
OMVs were prepared by inoculating tryptic soy broth (TSB) with ETEC strains and incubating at 37 °C for 15 h with shaking (150 r.p.m.). Vesicles were harvested from the supernatant according to the method of Kesty et al. (2004)
. After incubation, cells were pelleted by centrifugation (10 000 g, 10 min, 4 °C) and the supernatant was decanted and passed through a 0.22 µm-pore-size filter. Vesicles were collected by ultracentrifugation (150 000 g, 3 h, 4 °C), washed with PBS, resuspended in 100 µl mqH2O, and stored at 4 °C. Samples (10 µl) were placed on 300-mesh carbon-coated copper grids, allowed to settle on the film for 5 min, then the excess was removed and the grids were stained for 5 min with 1 % uranyl acetate. After drying, grids were viewed in a JEOL 1200EX transmission electron microscope and 10 random fields per grid were imaged for final vesicle counts. The protein content of OMVs was also analysed by 10 % SDS-PAGE.
Immunoprecipitation of FLAG-LeoA.
ETEC expressing FLAG-LeoA, FLAG-LeoA
G or a FLAG epitope control were subcultured 1 : 50 into 10 ml LB, grown for 3 h at 37 °C, and pelleted by centrifugation. After washing with PBS, bacteria were resuspended in PBS containing 1 % DMSO and incubated for 30 min at room temperature. Saturated Tris was added to 100 mM and incubation was continued for 10 min. Cells were pelleted by centrifugation, resuspended in lysis buffer (1 % Triton X-100, 10 mM Tris/HCl, pH 7.0, 1 mM PMSF), and sonicated. Following centrifugation to remove insoluble material, the supernatant was incubated for 2 h at 4 °C with 5 µg mouse-anti-FLAG antibody with gentle rotation. Then 25 µl protein G-Sepharose beads (pre-blocked with 1 % BSA) was added and the mixture was incubated overnight at 4 °C with gentle rotation. Beads were pelleted by centrifugation (2000 g, 1 min, 4 °C), washed three times with 1 ml lysis buffer. The final wash was removed with a 25-gauge needle, the pellet was resuspended in SDS sample buffer, and samples were analysed by 10 % SDS-PAGE.
Co-immunoprecipitation.
BL21(DE3) cells were co-transformed with plasmids expressing FLAG- and His-tagged forms of LeoA, LeoA
G and OmpA. Immunoprecipitations were conducted with protein G-Sepharose as described above. Mock immunoprecipitations of cultures expressing only a single construct were conducted to demonstrate antibody specificity.
Bacterial two-hybrid assay.
ETEC leoA, leoA
G and ompA were sublconed into the BacterioMatch two-hybrid system vector kit bait (pBT) and target (pTRG) plasmids (Stratagene). Plasmids were co-transformed into XL1 Blue MRF [kanamycin-resistant (Kanr)] and selected on LB agar plates containing the following antibiotics (µg ml–1): kanamycin (50), chloramphenicol (25), tetracycline (10) and carbenicillin (0 to 500). Positive protein–protein interactions in the assay turn on the bla reporter gene, yielding a transformant resistant to carbenicillin (Cbr). Transformation controls were performed on plates lacking Cb. Interaction controls were performed by cotransforming with empty pBT and pTRG vectors and with vectors expressing an unrelated fusion protein (E. coli O157 : H7 EspG).
Periplasmic protein isolation and motility assays.
ETEC strains were subcultured 1 : 50 into 5 ml LB, grown for 3 h at 37 °C, and pelleted by centrifugation. The bacterial pellet was washed with 10 ml PBS and the centrifugation was repeated. The supernatant was decanted and the pellet was resuspended in 1 ml 50 mM Tris pH 7.0, 20 % sucrose, 10 mM EDTA, 0.25 mg lysozyme ml–1. The suspension was incubated at room temperature for 10 min and centrifuged at 8000 g, 10 min, 4 °C. The supernatant was retained as the periplasmic fraction. Bacterial motility was evaluated by inoculating with a needle semisolid agar tubes containing BBL motility test medium (Beckton Dickinson), as described by the manufacturer.
Protein identification by LC-ESI-MS/MS.
Bands excised from protein gels were digested in-gel with trypsin (Promega) at 37 °C overnight. The tryptic peptide solution was transferred to a microcentrifuge tube, extracted with 1 % formic acid (Sigma-Aldrich), 2 % acetonitrile (ACN; Fisher) in water, followed by an extraction with 50 % ACN/water. Both extracts were combined with the tryptic peptide solution, concentrated in a SpeedVac and suspended in 1 % formic acid, 2 % ACN. Peptide analysis was performed using LC-ESI-MS/MS. The peptides were desalted in-line and concentrated with an RP-Trap Symmetry300 C18 column, 5 µm NanoEase (Waters), and separated using a C18 RP PepMap 75 µm capillary column on a CapLC (Waters). Spectra were obtained in the positive-ion mode with a Q-TOF micro mass spectrometer (Micromass), deconvoluted, and analysed using the MassLynx software 4.0 (Micromass). Peptide matching and protein searches were performed using the ProteinLynx Global Server v 2.1 (Micromass) against the NCBInr v20060912 database.
| RESULTS AND DISCUSSION |
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G) in which the putative GTP-binding site (GAFSDGKT) was replaced, through overlap PCR (Warrens et al., 1997
G was purified in the presence of 6 M guanidine hydrochloride and refolded via stepwise dialysis. To serve as a refolding control in subsequent biochemical assays, we also purified His-LeoA under denaturing conditions.
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G, 1 µg purified protein was added to the Enzchek Phosphate assay kit (Molecular Probes), which provides a sensitive GTPase assay system used previously to study the activity of a related family of GTPases (Zhuang et al., 2005
G did not result in efficient GTP hydrolysis, compared to His-LeoA (Fig. 1b
G, we analysed the activity of His-LeoA purified under denaturing conditions (Fig. 1b
G is due solely to the site-directed mutation, and not the purification method. Overall, these data suggest that LeoA is a functional GTPase.
Deletion of leoA alters OMP composition
To determine the role of LeoA in maintaining OMP composition, we isolated OMPs from H10407 possessing or lacking LeoA and assessed changes in OMP composition by SDS-PAGE. We first complemented the
leoA strain with plasmids expressing FLAG-tagged versions of LeoA (pleoA-FLAG) and leoA
G (pleoA
G-FLAG) and verified proper expression by Western blotting (Fig. 2a
). OMPs were isolated and prepared by ultracentrifugation from lysates obtained from 10 ml bacterial subcultures; 25 µg of protein was analysed by 10 % SDS-PAGE (Fig. 2b
). Notably, a protein of
16 kDa was present in greatly reduced abundance in the
leoA strain, relative to wild-type (wt) H10407. Complementation with either LeoA-FLAG or LeoA
G-FLAG restored protein abundance to wt levels. We excised this band and determined through mass spectrometry that this protein is OmpX.
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The GTPase domain of LeoA is essential to maximal LT secretion
To quantify the role of the GTPase domain of LeoA in LT secretion, we measured the concentration of LT in the periplasmic and supernatant fractions of ETEC possessing or lacking leoA. We determined that in wt H10407, a significant amount of LT was secreted into culture supernatants (Table 3
; 199.7±17.1 ng ml–1), whereas in the
leoA strain, significantly less LT was detected (34.5±4.3 ng ml–1). Quantification of LT in the periplasmic fraction demonstrated a higher concentration in the
leoA strain, in agreement with previous reports (Fleckenstein et al., 2000
). When strains were complemented with plasmids expressing leoA, proper LT secretion was restored. However, in strains complemented with the pleoA
G-FLAG construct, LT secretion into culture supernatants did not return to wt levels. Surprisingly, wt ETEC transformed with pleoA
G-FLAG also displayed an LT secretion phenotype similar to the
leoA strain. Overall, these data suggest that the GTPase domain of LeoA is required for maximal secretion of LT from the H10407 periplasm and suggest that expression of LeoA
G may exert a dominant-negative phenotype.
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14 %, transformation of 91.1283 caused no detectable change.
LeoA is important to the formation of OMVs
To determine the role of LeoA in the formation of OMVs, we purified OMVs from ETEC either possessing or lacking leoA by ultracentrifugation and filtration (Kadurugamuwa & Beveridge, 1997
) and quantified by electron microscopy the number of OMVs produced by each strain. Vesicle preparations from wt H10407 contained 15.2±3.2 OMVs per grid, whereas
leoA produced 4.0±1.8. Complementation of
leoA with pleoA-FLAG partially restored the production of OMVs (8.0±3.4), whereas complementation with pleoA
G-FLAG actually reduced the number of OMVs observed (1.4±3.1). Although gross morphological differences were not observed among OMVs produced by wt vs
leoA, it is possible that these OMVs may differ in their affinity for the electron microscopy grid.
We also sought to determine the extent to which OMV protein content differed among complemented strains by subjecting purified OMVs to SDS-PAGE. As shown in Fig. 2(c)
, the total protein content and distribution of specific proteins within OMVs differed substantially between wt and
leoA. Whereas complementation with pleoA-FLAG restored the wt OMV protein profile, complementation with pleoA
G-FLAG did not.
We also quantified the extent to which LT could be detected in OMVs purified from ETEC possessing or lacking LeoA. OMV-associated LT was found in wt H10407 (0.15 ng ml–1), although at a lower concentration than reported from ETEC 2 (Horstman & Kuehn, 2000
). We observed a slight reduction in LT concentration in OMVs isolated from
leoA and
leoA/pleoA
G-FLAG (0.08 and 0.07 ng ml–1, respectively), but not from
leoA/pleoA-FLAG (0.13 ng ml–1). These data suggest that LeoA may play a modest role in OMV formation and that the GTP-binding domain is important to this process.
LeoA interacts with OmpA
To identify ETEC proteins that interact with LeoA, we expressed FLAG-tagged versions of LeoA, LeoA
G and a FLAG-epitope control in ETEC H10407. ETEC lysates were incubated with an anti-FLAG antibody, immunoprecipitated with protein G Sepharose, and analysed by SDS-PAGE. As shown in Fig. 3(a)
, LeoA could be immunoprecipitated from both the pleoA-FLAG and the pleoA
G-FLAG strains (top asterisk). An additional protein band immunoprecipitated from both the pleoA-FLAG and the pleoA
G-FLAG samples, but not in the FLAG-epitope control sample (bottom asterisk), was excised and identified by mass spectrometry as the outer-membrane protein OmpA.
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leoA strain also has a significantly reduced growth rate in rich media (data not shown). An interaction between LeoA and OmpA could account for these observations.
To begin to confirm the putative interaction between LeoA and OmpA, ompA was cloned into pET28a and pFLAG-CTC and coexpressed with His- and FLAG-tagged LeoA and LeoA
G in BL21(DE3) cells. Lysates were subjected to immunoprecipitation with an anti-His antibody and interrogated by anti-FLAG immunoblotting. FLAG-OmpA could only be immunoprecipitated by
-His antibodies when coincubated with either His-LeoA or His-LeoA
G (Fig. 3b
, left). The converse experiment, in which anti-FLAG antibody was used to immunoprecipitate OmpA, also resulted in the enrichment of both His-LeoA and His-LeoA
G (Fig. 3b
, right). Mock immunoprecipitations demonstrated that His-LeoA was not precipitated with anti-FLAG antibodies unless FLAG-OmpA was present. Similarly, FLAG-OmpA was not precipitated with anti-His antibodies in the absence of His-LeoA. Overall, these data support the notion that LeoA interacts with OmpA.
We also studied the interaction between LeoA and OmpA in a bacterial two-hybrid assay system. In this assay, plasmids expressing fusion proteins to a DNA-binding domain and a transcriptional activation domain are co-transformed into reporter cells. Protein–protein interaction strength is assessed semiquantitatively by growth on selective media. Co-transformation of either LeoA or LeoA
G with OmpA conferred survival on selective medium (Fig. 3c
, octants 2–5). The interaction between enteropathogenic E. coli E2348/69 SepD-SepL was monitored as a positive control [Fig. 3c
, octant 1; (Deng et al., 2005
)]. Reporter gene activation was also seen in cells that coexpressed reporter fusions to OmpA (Fig. 3c
, octant 8). No growth was obtained in cells expressing only a single protein fusion, or with coexpression of LeoA constructs. No difference was observed in bacterial growth properties among strains transformed with LeoA or LeoA
G. We conclude from these data that the GTP-binding domain of LeoA appears nonessential in mediating binding to OmpA.
Deletion of leoA affects H10407 motility
We also interrogated the bacterial periplasm for evidence of proteins whose distribution might be affected by the presence or absence of LeoA. Significantly, a specific protein was highly increased in abundance in the periplasm of
leoA, relative to wt and the complemented strain (
leoA/pleoA-FLAG; Fig. 4a
, asterisk). We identified this protein by mass spectrometry as FliC. FliC is the major component of the bacterial flagellum (Aldridge et al., 2006
), which has a proven role in E. coli motility (Gomez-Gomez et al., 2007
), host cell adherence (Giron et al., 2002
; Wright et al., 2005
), invasion (Parthasarathy et al., 2007
) and virulence (Giron et al., 2002
; Parthasarathy et al., 2007
).
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leoA H10407 to Caco-2 cells (data not shown), when we evaluated bacterial motility,
leoA was significantly inhibited in its ability to swim through semisolid agar and complementation with pleoA-FLAG restored motility (Fig. 4b
It is interesting to speculate as to why LeoA appears to play a significant role in properties typically associated with H10407 virulence. The findings described here are of note because leoA is not typically found in ETEC isolates characterized to date. Turner et al. (2006)
analysed the distribution of leoA by multilocus sequence typing of 209 different ETEC isolates and found that leoA was present in only 3 % of the tested strains. These authors speculate that because numerous isolates possessing LT do not encode leoA, this gene is not generally required for ETEC pathogenicity (Turner et al., 2006
). Ongoing and future experiments may elucidate how LeoA might contribute to the disease severity associated with H10407 and whether similar functions might be imparted by related virulence factors in isolates that have been less well characterized.
| ACKNOWLEDGEMENTS |
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leoA strain, Chobi DebRoy for providing ETEC 91.1283, Michael Chaussee, Eduardo Callegari (University of South Dakota; NIH Grant P20 RR016479 from the INBRE Program of the National Center for Research Resources) and Leonard Foster (University of British Columbia) for assistance with mass spectrometry, and Randy Tindall and Martin Katz of the Electron Microscopy Core Facility at the University of Missouri, Columbia. This work was conducted in part using the South Dakota State University Functional Genomics Core Facility and was supported in part by the National Science Foundation/EPSCoR Grant 0091948 and by the State of South Dakota. Edited by: I. R. Henderson
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Received 23 April 2007;
revised 13 July 2007;
accepted 26 July 2007.
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