Quantitative proteomics and transcriptomics of anaerobic and aerobic yeast cultures reveals post-transcriptional regulation of key cellular processes, by M. J. L. de Groot, P. Daran-Lapujade, B. van Breukelen, T. A. Knijnenburg, E. A. F. de Hulster, M. J. T. Reinders, J. T. Pronk, A. J. R. Heck and M. Slijper

Microbiology vol. 153, part 11, pp. 3864 - 3878

Fig. S1. Localization and functional category distributions of the identified proteins according to MIPS. The groups and categories having a significant bias are indicated in the pie-charts, their percentages and their P-values according to the hypergeometric distribution test are given. (A) Distribution of the identified proteins according to the MIPS localization database. (B) Functional categories of the quantified proteins compared to the MIPS database. [PDF] (319 kb)

Table S1. Data for the quantified proteins. All quantified proteins are sorted by gene name, including protein and mRNA ratios, their respective standard deviations (SD) and protein identification data. Symbols and abbreviations: AN, detected anaerobically; AE, detected aerobically; NA, no available value; discarded by PCA; * included after PCA. [Excel file] (342 kb)

Table S2. MIPS categories having five or more members with a significant mode of protein- and mRNA-expression. A permutation-based test was performed to assess whether the points corresponding to a functional category occupy a specific place in the distribution of all data points. This provided 17 functional categories characterized by the strong homogeneity of their regulatory patterns. [PDF] (39 kb)

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