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Département de Microbiologie Fondamentale, Université de Lausanne, CH-1015 Lausanne, Switzerland
Correspondence
Cornelia Reimmann
Cornelia.Reimmann{at}unil.ch
| ABSTRACT |
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Present address: BIOMERIT Research Centre, Department of Microbiology, National University of Ireland, Cork, Ireland.
| INTRODUCTION |
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In Gram-negative bacteria, iron uptake is mediated by specific transport systems consisting of an outer-membrane receptor, which is energized by the TonB-ExbB-ExbD system (Moeck & Coulton, 1998
), and an inner-membrane permease, which often belongs to the family of periplasmic binding protein-dependent ABC transporters (Köster, 2001
). The entire ferrisiderophore complex may be transported to the cytoplasm, where iron is released from the chelator, e.g. in the case of iron uptake by ferrichrome (Köster, 1997
). Alternatively, iron release can occur in the periplasm and the siderophore does not cross the inner membrane, e.g. during ferric citrate transport (Hussein et al., 1981
).
Biosynthesis of siderophores and their cognate uptake systems is tightly regulated to ensure that they are produced only when needed and to avoid accumulation of iron, which can be deleterious to the cell (because free ferrous iron can catalyse the generation of hydroxyl radicals through the Fenton reaction: Andrews et al., 2003
). Under iron-rich conditions, the Fur protein represses, directly or indirectly, the expression of siderophore biosynthesis and uptake genes (Escolar et al., 1999
; Hantke, 2001
; Prince et al., 1993
; Vasil & Ochsner, 1999
). Fur-mediated repression is alleviated when iron becomes limiting, allowing a basal level of gene expression to occur. Full expression often requires the presence of the siderophore. By a variety of different mechanisms involving extracellular cytoplasmic function (ECF) sigma/anti-sigma factors, two-component regulatory systems or AraC-type regulators, the siderophore induces the expression of genes necessary for its uptake and, in certain cases, also for its biosynthesis (Poole & McKay, 2003
; Visca et al., 2002
). In this type of regulation, also known as siderophore-mediated signalling (Lamont et al., 2002
), perception of the siderophore can occur either at the cell surface, in the periplasm, or in the cytoplasm; examples are provided by pyoverdine-, enterobactin- and pyochelin-mediated signalling in the Gram-negative bacterium Pseudomonas aeruginosa. This opportunistic human pathogen produces two siderophores, pyoverdine and pyochelin (Cox, 1980
; Cox & Adams, 1985
; Meyer & Abdallah, 1978
; Rinehart et al., 1995
), but can promote iron uptake also with a variety of heterologous siderophores of fungal and bacterial origin (Poole & McKay, 2003
). Pyoverdine is perceived at the cell surface, where interaction of the ferripyoverdine complex with the outer-membrane receptor FpvA transmits a signal to the anti-sigma factor FpvR. This inner-membrane-spanning protein then activates two ECF-sigma factors, PvdS and FpvI, which are required for the transcription of pyoverdine biosynthesis and uptake genes, respectively (Beare et al., 2003
; Lamont et al., 2002
; Redly & Poole, 2003
). Perception of the heterologous Escherichia coli siderophore enterobactin occurs in the periplasm by the sensor kinase PfeS, which activates its cognate response regulator PfeR by phosphorylation such that PfeR becomes able to upregulate the transcription of the outer-membrane receptor gene pfeA (Dean & Poole, 1993
; Dean et al., 1996
). Pyochelin sensing occurs in the cytoplasm of P. aeruginosa. We have shown recently that pyochelin, possibly in its iron-loaded form (Michel et al., 2005
), is the intracellular effector required by the AraC-type regulator PchR (Heinrichs & Poole, 1993
, 1996
) to activate the expression of the two pyochelin biosynthesis operons pchDCBA (Serino et al., 1997
) and pchEFGHI (Reimmann et al., 1998
, 2001
), and of the fptA gene, encoding the outer-membrane ferripyochelin receptor (Ankenbauer & Quan, 1994
). (Note that until the iron status of the PchR effector has been confirmed by additional experiments, the more general term pyochelin will be used here.) As addition of pyochelin to the growth medium triggers expression of these target genes in pyochelin-negative mutants, it can be concluded that the siderophore needs to be translocated to the cytoplasm in order to act as a PchR effector. Genes involved in pyochelin-mediated iron uptake could thus be involved in pyochelin-mediated signalling and hence might also affect pyochelin production.
The fptA gene, located immediately downstream of the pyochelin biosynthesis genes (Fig. 1
), is followed by three contiguous ORFs, PA4220 (=fptB), PA4219 (=fptC) and fptX, which was reported recently to encode an inner-membrane permease required for growth with pyochelin as an iron source (Ó Cuív et al., 2004
). Here we demonstrate that these genes form a ferripyochelin transport operon and we evaluate their importance in pyochelin utilization, signalling, and pyochelin production.
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| METHODS |
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-galactosidase assays, P. aeruginosa strains were cultivated in GGP medium (Carmi et al., 1994
-galactosidase expression, X-Gal was incorporated into solid media at a final concentration of 0.02 %. To counterselect E. coli donor cells in matings with P. aeruginosa, chloramphenicol (Cm) was used at a concentration of 10 µg ml1; mutant enrichment was performed with Tc at a final concentration of 20 µg ml1 and Cb at a final concentration of 2000 µg ml1, as described previously (Ye et al., 1995
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Construction of plasmids used for complementation (Fig. 1)
.
Plasmid pME7034, which carries fptA, was generated as follows. A 1.2 kb EcoRIEcoRV fragment containing the promoter and the 5' region of fptA was excised from pMO012405 and cloned into pUCPSK, giving pME7033. The resulting plasmid was digested with EcoRI and SmaI and the remaining part of fptA was added on a pMO012405-derived 1.7 kb EcoRIXhoI fragment, made blunt at its XhoI end by T4 DNA polymerase. To construct pME7036, which carries the entire fptABCX operon, a 4.8 kb EcoRINruI fragment from pMO012405 was cloned into pUK21 between EcoRI and StuI, giving pME7032. The 4.8 kb insert was then excised with EcoRI and SpeI and cloned into pME7033, cleaved with the same enzymes. Expression of fptA and fptABCX in pME7034 and pME7036, respectively, occurs from the fptA promoter as the vector-encoded lac promoter is located at the end of the cloned genes. Plasmid pME7204, expressing the fptX gene under Plac control, was generated by inserting the 1.6 kb NotISpeI fragment from pME7032 into pUCPSK, linearized with the same enzymes.
Generation of translational lacZ fusions to fptB, fptC and fptX (Fig. 1)
.
The fptB''lacZ fusion carried by pME7518 was constructed as follows. First, a 0.2 kb fragment containing the 3' part of fptA and the first 2 codons of fptB was PCR-amplified from chromosomal DNA of PAO1 with primers yfpB-1 (GGCGTGAGCATGCGCCAGG; SphI-tagged) and fptB-1 (ACGTCTGCAGCGGCATCAGAACGCGCCCCG; PstI-tagged), cleaved with SphI and PstI and cloned into pME7215. From the resulting plasmid, a 2.8 kb fragment was excised with BglII and PstI and ligated to BamHI and PstI-linearized pME6015. An fptC''lacZ fusion was obtained in a similar way. A 0.5 kb PCR fragment, amplified from PAO1 chromosomal DNA with primers yfpB-1 and yfpB-2 (ACGTCTGCAGCGCCACTTCAACCGCGCCCC; PstI-tagged), was trimmed with SphI and PstI and cloned into pME7215. A 3.1 kb BglIIPstI fragment, carrying fptA, fptB and the first 2 codons of fptC, was excised from the resulting plasmid and cloned into pME6015 to give pME7517. To generate a translational lacZ fusion to fptX, a 2 kb PCR fragment was amplified with yfpB-1 and 4218-1 (ACGTCTGCAGAAGCATGGTGGTCTCCGGTG; PstI-tagged), cleaved with SphI and PstI and cloned into pME7215 as described above. Digestion with BglII and PstI yielded a 4.6 kb fragment containing fptA, fptB, fptC and the first two codons of fptX, which was cloned into pME6015 to generate pME7520. Plasmids pME7522, pME7521 and pME7523 lacking the fptA promoter region were generated by removing the 1.2 kb EcoRIEcoRI fragment from pME7518, pME7517 and pME7520, respectively.
P. aeruginosa mutant constructions.
Gene replacement mutants were generated as described previously (Ye et al., 1995
) using suicide plasmids constructed as follows. To create in-frame fptA deletions, plasmid pME7041 (Fig. 1
) was cleaved with SphI and BclI, treated with T4 DNA polymerase and religated, thus removing codons 54659 (note that the second BclI site present on pME7041 had not been cleaved during this experiment). The remaining 1.65 kb insert was excised with HindIII and BamHI and cloned into the suicide vector pME3087 to give pME7158. This plasmid was then used to delete the fptA gene in P. aeruginosa PAO1 and PAO6297, generating the corresponding mutants PAO6428 and PAO6429, respectively.
Chromosomal in-frame deletions in fptB were constructed as follows. First, a 0.97 kb XmaIIIXmaIII fragment containing fptB was excised from pME7041 and cloned into pBLS II KS linearized with NotI. The resulting plasmid served as template in an inverse PCR reaction with the BglII-tagged primers fptB-2 (ACGTAGATCTGGCGGGGCGCGGTTGAAG) and fptB-3 (GATCAGATCTAAGCCCGACTGGCGCGGCATC). The amplified fragment was cleaved with BglII and religated, giving a plasmid containing fptB with a deletion of codons 788 (
fptB). This
fptB gene, together with flanking DNA, was inserted on a 0.73 kb SacIHindIII fragment into pME3087 to give the suicide construct pME7208, which was used to generate the
fptB mutants PAO6423 and PAO6424.
The construction of the in-frame fptC deletion mutants PAO6387 and PAO6388 required several steps as well. A 0.54 kb XhoIXmaI fragment and a 0.4 kb NotIBamHI fragment, both originating from pME7032 and treated with T4 DNA polymerase at their XmaI and NotI ends, respectively, were ligated together and inserted into pBLS II KS between the XhoI and BamHI sites. This generated an fptC deletion derivative (
fptC) lacking codons 128445. The 0.94 kb XhoIBamHI fragment containing
fptC was then excised with KpnI and BamHI and cloned into pME3087 to yield the suicide construct pME7043, which was used to mutate fptC in strains PAO1 and PAO6297.
In strains PAO6368 and PAO6396, the fptX gene was mutated by insertion. A 1 kb ApaIPstI fragment originating from pME7032 and carrying the 5' part of fptX was first cloned into pBLS II KS, excised as a KpnIPstI fragment and inserted into pME3087. The 2 kb
-Sp/Sm cassette from pHP45
was then cloned into the BamHI site located 80 codons downstream of the fptX start codon. This generated the suicide plasmid pME7038 used to mutate fptX in strains PAO1 and PAO6297.
To generate pyoverdine-negative mutants, in-frame deletions were constructed in the pvdF gene as follows. Primers pvdF-1 (ACGTAGATCTTGCCCGGTATTTAGCGGC; BglII-tagged) and pvdF-2 (TCGAAAGCTTCAGAGCTTCTCGGCGAC; HindIII-tagged) were used to PCR-amplify the pvdF gene with its promoter region from chromosomal DNA of PAO1. The 1 kb PCR product was digested with BglII and HindIII and cloned into pUK21. A 0.22 kb XmaI fragment was removed from this plasmid to create an in-frame deletion in the pvdF ORF and the remaining insert was excised with BglII and PstI, and cloned into the suicide vector pME3087, cleaved with the same enzymes. The resulting plasmid pME7152 was then mobilized from E. coli S17-1 to P. aeruginosa PAO6297, PAO6429, PAO6424, PAO6388 and PAO6396, and chromosomally integrated, with selection for tetracycline resistance. Excision of the vector via a second crossing-over was obtained by enrichment for tetracycline-sensitive cells (Ye et al., 1995
), generating the mutants PAO6383, PAO6541, PAO6540, PAO6390 and PAO6397, respectively. Deletion mutants were generally identified either by Southern blotting or by PCR analysis, while
-insertion mutants could also be screened for by their Sp/Sm-resistant phenotype.
Identification of salicylate, dihydroaeruginoate (Dha) and pyochelin in culture supernatants of P. aeruginosa.
P. aeruginosa strains were grown in GGP medium for the time indicated. For HPLC analysis, ethyl acetate extracts of acidified culture supernatants were dried by evaporation, dissolved in 60 % (v/v) methanol/10 mM H3PO4 and injected into an HPLC system as described previously (Reimmann et al., 1998
). Compounds were identified by their retention times and UV spectra. Dha and salicylate were quantified at 256 and 237 nm, respectively. Pyochelin, which exists as a mixture of two interconvertible isomers, pyochelin I and pyochelin II (Rinehart et al., 1995
), was quantified at 258 nm and 254 nm, respectively.
Pyochelin-utilization assays.
Utilization of pyochelin as an iron source was measured with liquid growth assays as follows. Erlenmeyer flasks (50 ml) with 15 ml M9-glycerol minimal medium containing, or not, the iron chelator 2,2'-dipyridyl at 500 µM were inoculated to OD600 0.02 with precultures grown in M9-glycerol medium. HPLC-purified pyochelin was added at 20 µM final concentration and growth at 37 °C and 220 r.p.m. was recorded for 150 h.
-Galactosidase assays.
Fifty millilitre Erlenmeyer flasks containing 15 ml GGP medium were inoculated with 0.15 ml portions of precultures grown in the same medium. Incubation was at 37 °C and 220 r.p.m. for 12 h. When required, pyochelin, which was isolated from P. aeruginosa PAO1 and purified by HPLC (Reimmann et al., 1998
), was added at a final concentration of 20 µM.
-Galactosidase activities were determined by the method of Miller (Sambrook & Russell, 2001
) using cells permeabilized with 5 % (v/v) toluene.
RT-PCR.
Total RNA was extracted from a stationary-phase P. aeruginosa PAO1 culture in GGP medium by using the hot-phenol extraction method (Leoni et al., 1996
). Residual DNA was digested with 40 U RNase-free DNase I (Roche). Four micrograms of total RNA was added to a 38 µl reaction mixture (Omniscript RT kit, Qiagen) containing primer fptB-bw (GACCACGCGCCAGCAACCCG), fptC-bw (GGATGTCGACGCCTTCCTCG) or fptX-bw (CGACCCAGGGTGCCCAGAGG), respectively, but lacking reverse transcriptase. Reaction mixtures were divided in two equal parts to which either 1 µl (=4 U) of reverse transcriptase was added (positive reaction) or RNase-free water (negative control). Incubation was for 2 h at 37 °C for reactions using fptB-bw (RT-1) or fptC-bw (RT-2), and at 42 °C when fptX-bw was used (RT-3). Subsequent PCR reactions were performed on 2 µl of each RT mixture, using primer pairs fptA-fw (GACTACAGCGTCGACTACCG) and fptB-bw (for RT-1), fptB-fw (CGACCGCCAGCGGCTATCTG) and fptC-bw (for RT-2), and fptC-fw (GCGGATTGCTCGGCGTCGCC) and fptX-bw (for RT-3).
| RESULTS |
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-Galactosidase activities were measured under iron-limiting growth conditions in P. aeruginosa PAO1. As shown in Table 2
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pvdF,
pchBA mutant PAO6383 was unable to grow in iron-limited M9 medium but growth could be restored to a large extent when the medium was supplemented with 20 µM pyochelin as an iron source. Similar results were obtained with the PAO6383 derivatives affected in fptB (PAO6540, Fig. 3b
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pchBA), and its derivatives PAO6429 (
pchBA,
fptA), PAO6424 (
pchBA,
fptB), PAO6388 (
pchBA,
fptC) and PAO6396 (
pchBA, fptX : :
Sp/Sm), in both the presence and the absence of exogenously added pyochelin. As shown in Table 3
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| DISCUSSION |
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Previous work has established that fptA and fptX are both involved in pyochelin-mediated iron uptake (Ankenbauer & Quan, 1994
; Ó Cuív et al., 2004
). We have shown here that these genes are also important in pyochelin-mediated signalling in pyochelin-deficient and in pyochelin-producing strains (Tables 3 and 4![]()
) and, as a consequence, affect the production of pyochelin (Table 6
). This is consistent with the fact that pyochelin, possibly in its iron-loaded state, acts as an effector for the cytoplasmic PchR regulator (Michel et al., 2005
). After FptA-promoted translocation of ferripyochelin across the outer membrane, the inner-membrane permease FptX is believed to be necessary for subsequent ferripyochelin uptake into the cytoplasm. FptX belongs to a new family of single-subunit siderophore transporters which differs from classical, binding-protein-dependent ABC proteins, such as FhuBCD, which is required for ferric hydroxamate uptake in E. coli (Braun & Killmann, 1999
). Members of this new family seem to lack associated proteins that function in energy coupling or as periplasmic binding proteins (Ó Cuív et al., 2004
). The proteins encoded by the fptB and fptC genes are not expected to have such a role and we have shown here that they are not essential for pyochelin utilization (Fig. 3
), signalling (Tables 3 and 4![]()
) or pyochelin production (Table 6
). Given their co-regulation with fptA and fptX and their conservation in Burkholderia sp. and R. rubrum, it is difficult to believe that fptB and fptC should not be involved in these processes at all. We cannot exclude that their functions are redundant in P. aeruginosa such that fptB and fptC mutants do not show a distinct phenotype.
FptX seemed less important for signalling than FptA (Tables 3 and 4![]()
) and the fptX mutation did not entirely abolish, but rather delayed, pyochelin utilization (Fig. 3
). While this can be explained at least in part by the polar nature of the fptA mutation (Table 5
) it also indicates that, in the absence of fptX, ferripyochelin may enter the cytoplasm by an alternative permease, as transport across the inner membrane exhibits less specificity than at the outer membrane. The FhuBCD permease, for instance, facilitates the uptake of several hydroxamate siderophores, each of which requires its own receptor at the outer membrane (Köster, 2001
). Some hydroxamate siderophores can also be transported via a heterologous permease related to FptX (Ó Cuív et al., 2004
), illustrating that classical ABC-type permeases and single-subunit siderophore transporters may replace each other in some cases.
Mutations in ferripyochelin uptake genes also affected metabolite production (Table 6
) although the effect was less pronounced than on gene expression (Tables 3 and 4![]()
). This is likely due to the fact that under the experimental conditions used, gene expression is not the only parameter which determines the amount of product formed. Indeed, we have shown previously that pyochelin formation could be significantly increased when the growth medium was supplemented with cysteine (Gaille et al., 2003
), indicating that the intracellular cysteine pool is another important factor.
In conclusion, we have shown here that pyochelin-mediated signalling (and hence pyochelin production) involves the ferripyochelin uptake functions FptA and FptX. These results thus confirm and extend our previous work demonstrating that pyochelin, possibly in its iron-loaded form, acts as an intracellular effector of the AraC-type regulator PchR (Michel et al., 2005
). In the absence of ferripyochelin uptake functions, pyochelin-mediated signalling is, however, not entirely abolished, indicating that target gene induction may occur by an alternative signalling pathway as well.
| ACKNOWLEDGEMENTS |
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Edited by: P. Cornelis
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Received 28 September 2006;
revised 19 January 2007;
accepted 23 January 2007.
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