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1 Department of Molecular and Cell Biology, University of Connecticut, 91 N. Eagleville Road, Unit-3125, Storrs, CT 06269-3125, USA
2 Institute for Infectious Diseases, University of Berne, Friedbühlstr. 51, CH-3010 Berne, Switzerland
Correspondence
Joerg Graf
joerg.graf{at}uconn.edu
| ABSTRACT |
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The GenBank/EMBL/DDBJ accession no. for the A. veronii katA sequence is EF028076.
A figure showing the results of transformation of E. coli ZK918 with purified plasmid DNA from the A. veronii genomic library, after plating on MacConkey agar, is available as supplementary data with the online version of this paper.
| INTRODUCTION |
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2H2O+O2), and have presumably evolved to protect against cellular damage arising from exposure to H2O2. The two main factors that influence the expression of catalase gene(s) in bacteria are the exposure to sublethal H2O2 levels during exponential growth (Barnes et al., 1999
Aeromonas veronii is a facultative anaerobe which has a propensity to colonize the digestive tracts of a variety of hosts, including humans, leeches and mosquitoes, with manifestations of infection ranging from pathogenesis to mutualism (Graf et al., 2006
; Janda & Abbott, 1998
). Recently culture-independent analysis of the digestive-tract microbiota of the medicinal leech (Hirudo verbana, one of three species within the Hirudo medicinalis complex; Hirudinea: Arhynchobdellida: Hirudinidae) (Apakupakul et al., 1999
; Siddall & Burreson, 1998
; Siddall et al., 2001
; Trontelj & Utevsky, 2005
) has revealed the presence of a currently uncultured Rikenella-like species (Worthen et al., 2006
; Kikuchi & Graf, 2007
). These two symbionts are the dominant members of the leech digestive-tract microbiota. Putative functions for the Aeromonas symbiont within the medicinal leech include: (i) aiding in the digestion of the blood meal; (ii) providing essential nutrients lacking in the exclusive blood diet, such as B-complex vitamins; (iii) providing colonization resistance, in which A. veronii prevents colonization by other potentially harmful micro-organisms, thus preventing the putrefaction of blood and permitting long-term storage; and (iv) priming the microenvironment for the obligate anaerobic Rikenella-like symbiont (Worthen et al., 2006
; reviewed by Graf, 2002
).
Analogous to vertebrate innate immune responses, the introduction of Gram-negative bacteria and their by-products into leech wounds activates an inflammatory response involving the infiltration of macrophage-like cells (de Eguileor et al., 1999
, 2000a
, b
). During phagocytosis or following stimulation with a wide variety of agents, macrophages undergo respiratory bursts that are characterized by the production and release of ROS into the extracellular milieu (Forman & Torres, 2002
; Park, 2003
). ROS production is essential for the increased bactericidal capability of stimulated macrophages (Johnston & Kitagawa, 1985
). Bacteria can protect themselves against host-produced ROS by upregulating the genes encoding protective enzymes, such as superoxide dismutase, peroxidase and catalase. While the importance of these protective enzymes is well established for pathogens (Franzon et al., 1990
; Mandell, 1975
; Zheng et al., 1992
), they have also been shown to be crucial for the successful colonization of the light organ of the Hawaiian bobtail squid Euprymna scolopes by its extracellular, mutualistic symbiont Vibrio fischeri (Visick & Ruby, 1998
), and for the regulation of the infection of root nodules by the nitrogen-fixing Sinorhizobium meliloti (Santos et al., 2001
).
We report the cloning and functional characterization of the A. veronii gene encoding the antioxidant enzyme catalase katA. We further examine the presence of katA homologues in other Aeromonas species. Implementing a targeted mutant analysis approach, the importance of katA for A. veronii survival following exposure to damaging oxidative-stress conditions, and for proliferation and persistence within the medicinal leech, was evaluated.
| METHODS |
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Animals.
The medicinal leeches used in this study were obtained from LeechesUSA and Zaug GmbH (Biebertal, Germany). The animals were starved for at least 3 months prior to delivery and maintained without feeding in leech tanks at 25±1 °C (Graf, 1999
).
Isolation of genomic DNA.
Genomic DNA was isolated using a modification of the cetyltrimethylammonium bromide (CTAB) method (Nelson & Selander, 1994
) by preheating the samples to 65 °C for 5 min prior to lysis with SDS. For large-scale DNA isolation, the volume was increased 30-fold, samples were preheated to 65 °C for 10 min, and the precipitated DNA was isolated using a glass Pasteur pipette.
Construction of A. veronii genomic library.
Genomic DNA was partially digested with Sau3A and separated by electrophoresis in low-melting-point agarose. DNA fragments (
6.5–7.6 kb) were purified by phenol extraction and cloned into the dephosphorylated BamHI site of pBSIIKS+. The ligations were transformed into E. coli XL-1 Blue MRF' super competent cells (Stratagene) through heat shock at 42 °C.
Complementation of the E. coli rpoS mutant.
Purified plasmid DNA from the A. veronii genomic library was transformed into calcium-competent E. coli rpoS mutant ZK918 (Sambrook & Russell, 2001
). Transformants were plated on MacConkey agar (Ap, Km) and screened for red colonies. Strains exhibiting this phenotype were picked and patched onto MacConkey agar plates, where the colour phenotype was reassessed. The colonies were additionally examined for the production of catalase by observing the release of O2 bubbles following the addition of 3 % H2O2 (Supplementary Fig. S1).
Characterization of the complementing plasmids.
The complementing plasmids were isolated using Plasmid Mini or Plasmid Midi kits (Qiagen) and sequenced using a combination of subcloning and primer walking (Central DNA Sequencing Facility, Department of Clinical Research, University of Berne, and the Biotechnology Center, University of Connecticut). The DNA sequences were aligned using Vector NTI (Invitrogen) and compared to the databases using the BLAST 2.2.13 algorithm (Altschul et al., 1997
).
Southern analysis.
DNA (Aeromonas hydrophila ATCC 14715, Aeromonas salmonicida CDC 0434-84, Aeromonas caviae ATCC 15468, Aeromonas media CDC 0862-83, Aeromonas eucrenophila ATCC 23309, Aeromonas sobria CIP 7433, A. veronii bv. sobria CDC 0437-84, Aeromonas veronii bv. sobria HM21, A. veronii bv. veronii ATCC 35624, Aeromonas schubertii ATCC 43700 and Aeromonas allosaccharophila LMG 140549) was digested with PstI for 6 h and separated by agarose gel electrophoresis. The loading of an equivalent amount of DNA in the various lanes was confirmed by ethidium bromide staining. The DNA was transferred onto a nylon membrane through overnight capillary transfer and fixed to the membrane with 0.4 M NaOH (Sambrook & Russell, 2001
).
A 743 bp hybridization probe was PCR-amplified from HM21 DNA using PkatF, 5'-TCG ACA ACA ACA ACA GCC TCA C-3', and PkatR1, 5'-CAC CTG CAC ATA GAC TTT CCA GC-3', as described below, and subsequently labelled using the Amersham ECL Direct System (Amersham Life Science). The membrane was prehybridized at 42 °C in the Amersham ECL direct hybridization buffer. After 1 h, the probe was added and allowed to hybridize overnight. The membrane was washed twice for 20 min at 42 °C in the primary wash buffer and twice for 5 min in the secondary wash buffer. The membrane was incubated with detection reagents 1 and 2 for 1 min and exposed to X-ray film.
Construction of the catalase mutants.
For the construction of the catalase mutants, two internal fragments of katA were amplified by PCR using PkatF and either PkatR1 (amplifying a 743 bp product and resulting in
katAS) or PkatR2, 5'-AGG AGA AGA GTC GCC CTT G-3' (amplifying a 966 bp product and resulting in
katAL). Single amplicons were obtained for each of the two primer sets. The PCR products were blunt-ended using T4 DNA polymerase and ligated into SmaI-digested pBSII, yielding pJG54 (containing the shorter PCR product,
katAS) and pJG55 (containing the longer PCR product,
katAL). The cloned fragments were introduced into the
-dependent R6K origin of replication suicide vector pKAS32, using XbaI–EcoRI ends, resulting in pJG57 (
katAS) and pJG58 (
katAL). The suicide plasmids were transformed into S17-1
pir and introduced into HM21R by conjugation with shaking (Simon et al., 1983
). Donor (5x107 c.f.u. between 0.4 and 0.8 OD600) and recipient (2x108 c.f.u. between 0.25 and 0.4 OD600) cells were harvested and spotted on an LB agar plate. Following an overnight incubation at 30 °C, transconjugants were selected on LB agar (Rf, Km).
Zymography.
Whole-cell lysates were prepared from the cells as described in Methods, Sensitivity to H2O2, below. The cells were lysed by sonication (three bursts, 15 s) and centrifuged at 4 °C for 30 min (12 000 g). Supernatants were loaded onto a 10 %, w/v, acrylamide gel and separated at 150 V for 45 min. The gel was washed extensively in double-distilled (dd) H2O and for 10 min in 0.0155 M H2O2. Subsequently, the gel was stained in a solution containing 1 %, w/v, ferric chloride and 1 %, w/v, potassium ferric cyanide for the visualization of catalase activity (Barnes et al., 1999
).
Analysis of catalase activity.
Paired 5 ml aliquots of cultures were removed at various optical densities and either induced with 0.05 mM H2O2 or not induced. The aliquots were incubated for an additional 30 min before being placed on ice. A crude cell extract was prepared by sonication. Specific catalase activity was determined by measuring the removal of H2O2 from the crude cell extract for 60 s and dividing by the amount of protein, as determined by a Lowry protein assay (Lowry et al., 1951
; Beers & Sizer, 1952
; Visick & Ruby, 1998
). Briefly, the cell pellet was resuspended in phosphate buffer, pH 7.0, containing 5 mM EDTA, 10 %, v/v, glycerol and 25 µM PMSF. The change in A240 was monitored four consecutive times (15 s per period) following the addition of 0.5 volumes of 59 mM H2O2 to 1 volume of crude extract. The mean rates were converted to U mg–1 min–1.
Reverse transcription of katA.
Total RNA was isolated from 2.5x108 A. veronii (JG186 and HM21R) cells grown to stationary or early mid-exponential phase, employing the Qiagen RNeasy protocol for total RNA isolation from bacteria. An aliquot of the mid-exponential-phase cells was exposed to a sublethal dose of H2O2 (0.05 mM) for 30 min at 30 °C. The optional on-column RNase-free DNase I (Qiagen) was used to remove contaminating DNA. After RNA isolation, traces of contaminating DNA were further eliminated with an RNase-free DNase I treatment. Random hexamer primers, iScript reverse transcriptase (Bio-Rad) and 0.5 µg total RNA were utilized for first-strand cDNA synthesis. Subsequent PCR was performed with katAF', 5'-GAC AAG ACC CTG CAC AGC-3', and katAR', 5'-CGC TCA TTG GCG TCG TTG-3'. The absence of DNA contamination was verified by PCR using RNA template lacking a reverse-transcription step.
Sensitivity to H2O2.
The sensitivity of the katA mutant JG186 and its parent strain HM21R to H2O2 was determined for cells prepared in three different ways. The cells were grown either to stationary or to early exponential phase. A portion of the early exponential-phase cells was exposed to a sublethal dose of H2O2, as described above. Cells from both strains and at each growth condition were diluted to the same density (5x106 c.f.u. ml–1), challenged with various H2O2 concentrations for 30 min at 30 °C, serially diluted and plated. The percentage survival was determined by dividing the count obtained following the exposure to H2O2 of each strain by the count obtained prior to challenge.
Complementation of JG186.
A 1.8 kb amplicon that contained katA and its promoter and termination regions was PCR-amplified using katAFullF', 5'-GAC CAC ATC ACC GTT CTC CA-3', and katAFullR', 5'-TGC TCG CAA TAG AAA ACG GG-3'. The amplicon was cloned into pCR 2.1 (Invitrogen), resulting in pRRJG5. The cloned 1.8 kb fragment was moved into the broad-host-range vector pMMB207 (Morales et al., 1991
) from pRRJG5 by utilizing the EcoRI sites. The resulting plasmid, pRRSR1, was electroporated into E. coli DH5
pir cells. The presence of the insert was verified through DNA sequencing and restriction digests. pRRSR1 and pMMB207 were each introduced into HM21R and JG186 through conjugation. The resulting strains were induced and challenged with 0.8 and 1.0 mM H2O2, respectively, as described above.
Colonization assay.
The competition assay used in this study, which compared the ability of JG186 and a competitor strain to colonize the medicinal leech, was similar to the assay we described previously (Graf, 1999
), except that the two strains were simultaneously fed to the leech in a single blood meal. Briefly, leeches were fed heparinized sheep blood (25 U ml–1, Sigma) that had been stored for 18–24 h at 23 °C. Cells (500 c.f.u. ml –1 of JG186 and HM21RS) were added to blood that had been preheated to 56 °C, which inactivates the antimicrobial properties of the complement system, which can kill sensitive bacteria (Indergand & Graf, 2000
). The animals were fed 5 ml blood and individuals were subsequently incubated at 23 °C. At 6 and 18 h post-blood meal, animals were sacrificed and the intraluminal fluid was collected from the crop of the digestive tract. Serially diluted samples were plated on LB plates containing the appropriate antibiotics and incubated overnight at 30 °C, allowing for comparative counts of the introduced microbiota. The limit of detection was 10 c.f.u. ml–1. Similarly, sole-colonization assays were performed to rule out the possibility that the katA mutation was circumvented by the endogenous catalase of HM21RS. For the sole-colonization assay, the inoculum was between 200 and 500 c.f.u. ml–1 of either JG186 or HM21R, and animals were sacrificed 18 h post-blood meal to determine colonization levels. For each time point, at least three animals were used.
Statistical analysis.
The data were analysed using Graph Pad Prism 2.01. A competitive index (CI) was calculated in order to compare test strain concentrations in the intraluminal fluid following their introduction. The absolute and relative levels of each strain were monitored over time by sacrificing animals at predetermined time points and plating serial dilutions on antibiotic-containing plates. CI was calculated as follows:
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0.05) are reported. | RESULTS |
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S-dependent promoter fusion bolAp1–lacZ. The second phenotype is the release of O2 bubbles by colonies after the addition of H2O2 due to the expression of the
S-dependent HPII catalase katE. Competent ZK918 were transformed with a genomic library from A. veronii. Of the 9000 transformants screened, three exhibited the red colouration and release of O2 after the addition of H2O2. The complementing plasmids pMA2, pMA5 and pEP2 were isolated and reintroduced into the rpoS mutant ZK918. All three plasmids again complemented ZK918, indicating that complementation was due to the plasmids and not to a secondary chromosomal mutation in the transformed strain. Analysis of these plasmids by restriction endonuclease digestion was consistent with all three plasmids carrying similar chromosomal regions and was confirmed by sequencing the ends of the inserted genomic DNA. Because all three plasmids complemented ZK918 and contained essentially the same chromosomal region, we focused on pMA5 in our subsequent analysis.
The region of pMA5 that was responsible for complementing the E. coli rpoS mutant was identified by deleting regions of the inserted DNA, transforming the subcloned plasmids into ZK918, and testing for red colony colour as well as the release of O2 bubbles following H2O2 exposure (Fig. 1a
). Interestingly, transformation with pMA10 resulted in a red colour but failed to restore the ability of ZK918 to produce O2 bubbles (Supplementary Fig. S1), suggesting that two different loci may actually be responsible for the two phenotypes.
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ORF1 consisted of 1446 nt encoding 482 amino acids with a predicted molecular mass of 54 kDa and isolectric point (pI) of 5.98. Putative –10 and –35 regions for the E. coli housekeeping sigma factor were found 27 and 52 bp, respectively, upstream of the presumptive start codon. A potential Shine–Dalgarno sequence (AGGAGA) was also detected 7 bp upstream of the presumptive start codon. Downstream of the stop codon a GC-rich interrupted dyad symmetry followed by a run of Ts was found, consistent with the stem–loop structure of a rho-independent terminator.
Comparison of the nucleotide sequence from ORF1 with the public databases using BLASTX revealed sequence similarity to the group III small-subunit bacterial catalases (Klotz et al., 1997
), including HktE from Pasteurella multocida (70 % identity and 81 % similarity), a putative catalase from Photobacterium profundum (71 % identity and 79 % similarity) and the catalases of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica (69 % identity and 83 % similarity). Furthermore, the deduced amino acid sequence was conserved along the entire protein length with a slightly lower degree of sequence identity at the carboxyl terminus. In addition, a PROSITE search revealed that the two regions conserved in functional catalases are also present in A. veronii protein. Catalase region 1 is responsible for haem binding and contains a conserved tyrosine residue (RLFSY.DTQ), while catalase region 2, a section of the catalytic site, contains a conserved histidine residue (F.R....ER..H..GSG) (Fig. 1c
). In accordance with the high sequence identity, the retention of conserved residues and the release of bubbles following the addition of H2O2 in the complemented rpoS mutant ZK918, we designated the gene as katA (accession no. EF028076).
ORF2 had sequence similarity to a putative acetyltransferase of Bacillus subtilis, whereas ORF3 was homologous to a DNA gyrase inhibitor. A comparison of the A. veronii katA locus with the A. hydrophila genome revealed conservation in genetic organization (Seshadri et al., 2006
).
Presence of catalase genes in Aeromonas species
We were interested in determining whether other Aeromonas species possess a similar catalase gene. An internal fragment of katA was amplified and used as a probe for Southern analysis of nine Aeromonas species (Fig. 2
). With the exception of A. schubertii, all of the Aeromonas species examined revealed one band that hybridized to the katA probe, suggesting that these eight species possess a similar catalase gene. Interestingly, the Aeromonas leech isolate HM21 katA band co-migrated with that of A. veronii bv. veronii rather than that of A. veronii bv. sobria.
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katAL derived) and JG183 and JG184 (
katAS derived), was confirmed by Southern blotting using a katA-specific probe. A shift in the molecular mass of the bands that hybridized with the katA probe was observed, indicating that the plasmid had incorporated into the katA locus (data not shown). We chose JG186 for further functional characterization. The growth rate of JG186 in LB did not differ from that of HM21R and HM21RS under similar conditions.
Detection of catalase activity
Facultative or obligate aerobic bacteria can possess multiple catalases. Our Southern analysis suggested the presence of only one catalase, but we wanted to verify catalase activity independently of sequence similarity through zymography. Whole-cell lysates of the parent strain and JG186 were obtained from cells grown to early exponential phase and stationary phase, and from early exponential-phase cells that were exposed to a sublethal concentration of H2O2 for 30 min (induced). Catalase activity was detected only from lysates of induced early exponential-phase HM21R cells (Fig. 3
). No other samples exhibited catalase activity, further supporting the presence of only one A. veronii catalase that is inducible by oxidative stress. Furthermore, these results also demonstrated that JG186, the katA mutant, does not produce detectable levels of catalase.
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Colonization of the medicinal leech
In symbiotic relationships, mechanisms that control the spatial (anatomical) localization and the proliferation of the symbiotic flora are critical for the maintenance of homeostasis (Rio et al., 2006
). One common mechanism employed to control infections of pathogenic bacteria is to create an environment of oxidative stress that kills sensitive bacteria. Catalase has been shown to be required for the normal symbiotic competence of V. fischeri and Eu. scolopes, being induced by both oxidative stress and the approach to stationary phase (Visick & Ruby, 1998
). Accordingly, we were interested to determine whether the loss of katA would lead to a reduced ability of A. veronii to colonize H. medicinalis. Using the competition assay, no significant differences in the c.f.u. ml–1 of JG186 and HM21RS at 6 h (a two-tailed, one-sided t test was used to test whether the CI differed from 1, with P=0.1827) following introduction were detected, suggesting that at least under these conditions, the loss of katA was not essential for symbiotic establishment (data not shown). Furthermore, no significant differences in the c.f.u. ml–1 of JG186 and HM21RS at 18 h following feeding (a two-tailed, one-sided t test was used to test whether the CI differed from 1, with P=0.3762) were detected, indicating that symbiotic persistence remains unaltered following the loss of catalase activity (data not shown). Additionally, a sole-colonization assay indicated no difference in JG186 colonization levels in comparison to HM21R at 18 h, suggesting that the mutant did not rely on the catalase activity of the competitor strain for colonization (P=0.27) (data not shown).
| DISCUSSION |
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Significant protection against oxidant killing was provided by katA during H2O2 challenges, particularly during exponential growth. Correspondingly, catalase activity was detected only from early exponential-phase HM21R cell lysates that had been induced with a sublethal concentration of H2O2. These induced cells were more protected against oxidative stress when subsequently challenged with even greater H2O2 concentrations. Similar challenges proved detrimental to non-induced HM21R and the katA mutant JG186, supporting the importance of both catalase activity and an adaptive antioxidant response that facilitates protection against subsequent lethal doses. Interestingly, the induction of katA was detected only in cells during early exponential-phase growth, differing from that reported for A. salmonicida, in which induction during mid-exponential and early stationary phase provides the greatest protection against H2O2 challenge (Barnes et al., 1999
). Also, A. salmonicida is protected against higher levels of H2O2 (Barnes et al., 1999
), although this could be due to differences in experimental design. In addition to the protection provided by KatA, a catalase-independent defensive mechanism against exogenous H2O2 was observed in stationary-phase A. veronii cells. This additional protection may be due to the upregulation of other antioxidant enzymes, such as the glutathione and thiol peroxidases that are present in the A. hydrophila genome (Seshadri et al., 2006
). If such peroxidases are also present in the A. veronii genome, they could contribute to the protection detected during the stationary phase. Additionally, the low metabolic activity during stationary phase reduces the generation of ROS during respiration, and thus even basal levels of antioxidant enzymes may provide sufficient protection against oxidative stress (Barnes et al., 1999
). The expression of A. veronii katA from pRRSR1 was unable to restore the wild-type phenotype. However, a polar effect of the katA mutation is unlikely, given that following the rho-independent terminator, according to the A. hydrophila genome, the downstream gene, a conserved hypothetical protein, is transcribed in the opposite direction. Our A. veronii draft genome sequence supports conservation in the genetic organization of the katA locus.
Oxygen and its reactive derivatives have been demonstrated to play significant roles in promoting the efficiency and specificity of non-digestive-tract symbiotic systems, such as those between S. meliloti and leguminous plants, photosynthetic algae and marine invertebrates, and V. fischeri and Eu. scolopes (reviewed by Ruby & McFall-Ngai, 1999
). Unlike catalase mutants in these systems, the A. veronii catalase mutant was not defective in its ability to colonize or persist within its host digestive tract, at least under the conditions tested. This suggests either that oxidative stress, in the form of H2O2 exposure, is not encountered by the microbial partner during the colonization of the leech digestive tract or that other compensatory mechanisms exist, such as the previously mentioned peroxidases. Examining whether catalase is crucial for A. veronii infection in other associations, such as the cooperative zebrafish digestive tract, and whether virulence is attenuated in the mouse model may provide further insights. Similarly, B. pertussis does not require catalase for persistence within human polymorphonuclear leukocytes (PMNs), although phagocytosis is associated with a respiratory burst that involves the generation of O2 and H2O2 (DeShazer et al., 1994
). It is possible that O2 introduced with the fresh blood meal is removed rapidly in the leech digestive tract by the aerobic metabolism of Aeromonas, generating an environment that does not permit the generation of ROS and is suitable for the anaerobic Rikenella-like symbiont that likely does not possess antioxidant enzymes. Synergistic interactions between the two microbes resulting in enhanced mixed-species, polysaccharide-embedded microcolony formation have been suggested to occur within the leech digestive tract (Kikuchi & Graf, 2007). The apparent lack of oxidative stress suggests that other mechanisms must be responsible for ensuring the specificity, establishment and maintenance of this unusually simple digestive-tract community.
| ACKNOWLEDGEMENTS |
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Edited by: J. G. Shaw
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Received 2 October 2006;
revised 31 January 2007;
accepted 4 February 2007.
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