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1 School of Molecular and Microbial Sciences, University of Queensland, Brisbane, Queensland 4072, Australia
2 Centre for Microscopy and Microanalysis, University of Queensland, Brisbane, Queensland 4072, Australia
Correspondence
Mark A. Schembri
m.schembri{at}uq.edu.au
| ABSTRACT |
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A supplementary table of primers is available with the online version of this paper.
| INTRODUCTION |
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Uropathogenic Escherichia coli (UPEC) is the cause of the majority (>80 %) of UTIs in humans. UPEC isolates exhibit a high degree of genetic diversity due to the possession of specialized virulence genes located on mobile genetic elements called pathogenicity islands (Oelschlaeger et al., 2002b
). Although no single virulence factor is uniquely definitive of UPEC, their ability to cause symptomatic UTI is enhanced by adhesins (e.g. type 1 and P fimbriae) and toxins (e.g. haemolysin) (Klemm & Schembri, 2000
; Oelschlaeger et al., 2002a
). Adherence to the urinary tract epithelium is the first stage of UTI, enabling the bacteria to resist the hydrodynamic forces of urine flow and establish infection. Among the more common adhesins produced by UPEC are type 1, P, F1C, S and Auf fimbriae and the Afa/Dr adhesins (Oelschlaeger et al., 2002a
).
Fimbrial adhesins of UPEC are characterized by a conserved chaperone-usher pathway that underpins their assembly (Sauer et al., 2004
). Fimbriae assembled by the chaperone-usher pathway are typically encoded by individual gene clusters that in addition to the chaperone- and usher-encoding genes also include genes encoding the major and minor pilin subunits. P and type 1 fimbriae are the best-characterized chaperone-usher class of fimbriae produced by UPEC. P fimbriae are most strongly associated with UTI in clinical studies. P fimbriae contribute to the establishment of bacteriuria by binding to the
-D-galactopyranosyl-(1-4)-β-D-galactopyranoside receptor epitope in the globoseries of glycolipids (Kallenius et al., 1981
; Leffler & Svanborg-Eden, 1981
) and activate innate immune responses in animal models and in human infection (Svanborg et al., 2006
). Similarly, type 1 fimbriae enhance colonization and stimulate immune responses in the murine urinary tract (Connell et al., 1996
). Type 1 fimbriae confer binding to
-D-mannosylated proteins such as uroplakins, which are abundant in the uroepithelial lining of the bladder (Wu et al., 1996
). Both P and type 1 fimbriae recognize their receptor targets by virtue of organelle tip-located adhesins, namely PapG and FimH, respectively (Klemm & Schembri, 2000
). F1C (Foc) are a third type of fimbriae that belong to the chaperone-usher subfamily and resemble type 1 fimbriae in their genetic organization and organelle structure (Klemm et al., 1994
, 1995
; van Die et al., 1991
). F1C fimbriae mediate binding to galactosylceramide targets present on epithelial cells in the bladder and kidneys as well as globotriaosylceramide, present exclusively in the kidneys (Bäckhed et al., 2002
; Khan et al., 2000
). Other fimbriae of the chaperone-usher family that have been characterized from UPEC include S fimbriae, which mediate adherence to sialic acid glycolipids or glycoproteins, and Auf fimbriae (Buckles et al., 2004
; Korhonen et al., 1984
).
Despite the vast array of adhesins that have been defined in UPEC, three recently sequenced UPEC genomes have revealed the existence of several additional gene clusters that display homology to genes from the chaperone-usher class of fimbriae (Brzuszkiewicz et al., 2006
; Chen et al., 2006
; Welch et al., 2002
). For example, the genome sequence of UPEC CFT073 contains ten different loci that may encode fimbriae that belong to this subfamily. Only half of these fimbrial gene clusters have been characterized to date and the functions of the remainder are unknown. Here we identify and characterize one of these fimbrial gene clusters (c1931–c1936) from UPEC CFT073. The fimbriae encoded by this gene cluster, termed F9 fimbriae, are homologous to type 1 and F1C fimbriae and promote biofilm formation on abiotic surfaces.
| METHODS |
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Cloning of the F9 fimbriae-encoding gene cluster and PCR screening assay.
The F9 fimbriae-encoding gene cluster (c1931–c1936) was amplified by PCR using primers 598 and 599. The PCR product was digested with XhoI and ligated to XhoI-digested plasmid pBAD/Myc-HisA (Invitrogen Life Technologies). In this construct, expression of the F9-encoding genes is under control of the arabinose-inducible araBAD promoter (Guzman et al., 1995). Specific primers were employed to screen for the prevalence of the F9 chaperone- (596 and 597) and adhesin- (100 and 101) encoding genes.
Construction of CFT073fim, CFT073fim foc and CFT073fim foc f9 deletion mutants.
CFT073 deletion mutants were constructed using the
-Red recombinase gene replacement system (Datsenko & Wanner, 2000
). Briefly, the kanamycin resistance gene from plasmid pKD4 was amplified using primers containing 40–50 nt homology extensions to the start and end of the gene clusters to be deleted. The following primers were used: (i) 244 and 245 for deletion of the fim gene cluster; (ii) 495 and 496 for deletion of the foc gene cluster; (iii) 195 and 196 for deletion of the f9 gene cluster. The primers were used to amplify a 1.6 kb PCR product from plasmid pKD4, representing the kanamycin resistance cassette from pKD4 and additional 40–50 bp overhang regions (underlined in Table S1) at the 5' and 3' ends of the PCR product complementary to the target genes in CFT073. CFT073fim was constructed by transforming CFT073(pKD46) with the PCR product containing homology to the fim gene cluster and selection of kanamycin-resistant colonies. The kanamycin resistance cassette was then removed using plasmid pCP20. The foc deletion was constructed in a similar manner using CFT073fim(pKD46) to generate CFT073fim foc. This strain was subsequently used to generate CFT073fim foc f9 by the same procedure, except that in this case the kanamycin resistance cassette was not removed. All deletions were confirmed by PCR using k2 and kt primers (Datsenko & Wanner, 2000
) in combination with 254 and 255 (fim deletion), 573 and 574 (foc deletion) and 252 and 253 (f9 deletion) and subsequent DNA sequencing.
Agglutination and adherence assays.
The capacity of F9-expressing E. coli MS1129 to agglutinate human, dog, horse or sheep red blood cells (RBC), or yeast cells, was assessed as previously described (Roos et al., 2006a
; Schembri et al., 2000
). Briefly, a suspension of washed bacterial cells (OD550 0.5) was mixed with RBC or yeast cells on a glass slide and the time to agglutination was measured. Adherence of MS1129 to human HeLa epithelial cells was determined essentially as previously described (Ulett et al., 2003
).
Biofilm assays.
Biofilm formation was monitored by using sterile non-treated 96-well round-bottom polystyrene microtitre plates (BD Falcon) essentially as previously described (Schembri & Klemm, 2001
). Briefly, cells were grown for 24 h in M9 minimal medium (containing 0.2 % arabinose for induction of F9-encoding genes) at 37 °C, washed to remove unbound cells and stained with crystal violet. Quantification of bound cells was performed by addition of acetone/ethanol (20 : 80, v/v) and measurement of the dissolved crystal violet as absorbance at 595 nm. Flow chamber experiments were performed essentially as previously described (Kjaergaard et al., 2000b
; Schembri et al., 2003
), with the exception that cells were detected using BacLight green fluorescent stain (Molecular Probes). Briefly, biofilms were allowed to form on glass surfaces in a multi-channel flow system that permitted online monitoring of community structures. Flow cells were inoculated with OD600 standardized cultures pre-grown overnight in M9 medium. Glucose was used as the sole carbon source at a concentration of 0.002 % and BacLight green fluorescent stain was used at a concentration of 0.1 µM according to the manufacturer's instructions. F9 expression was induced with 0.2 % arabinose. Biofilm development was monitored by confocal scanning laser microscopy at 15 h after inoculation. All experiments were performed in triplicate. Biofilms analysed by scanning electron microscopy (SEM) were grown in 24-well cell culture plates on 15 mm sterile Thermanox plastic coverslip inserts (Nalgene Nunc International). Wells containing coverslip inserts were seeded with approximately 104 c.f.u. resuspended in 1 ml M9 medium and were incubated statically overnight at 37 °C. Coverslips were removed from the wells after 24 h, washed extensively with PBS and incubated in fresh medium for a further 24 h to allow biofilm maturation prior to processing for SEM analysis.
RNA isolation and RT-PCR.
UPEC CFT073 was grown to exponential phase in M9 minimal medium and resuspended directly in an equal volume of ice-cold RNAlater (Ambion). Total RNA was isolated using an RNeasy mini kit (Qiagen). RNA was treated with RNase-free DNase, repurified and stored at –80 °C. RNA was converted to cDNA using SuperScript II as described by the manufacturer (Invitrogen Life Technologies). A negative control of non-reverse-transcribed RNA was used to confirm the absence of contaminating genomic DNA. RT-PCR was performed for 25 cycles (94 °C 15 s, 50 °C 15 s, 72 °C 1 min) with primers 600 and 601. These primers were specific for F9 major subunit-encoding gene (c1936) and did not amplify the closely related fimA or focA genes.
Purification of F9 fimbriae and antibody production.
A 500 ml culture of MS1129 cells was grown in LB to an OD600 of 1.0, induced for F9 fimbriae expression for 2 h with 0.2 % arabinose, harvested by centrifugation and resuspended in 10 ml PBS. Fimbriae were detached from the cells with a mini hand blender using five 30 s pulses essentially as previously described (Klemm et al., 1998
). The bacteria were pelleted and the detached F9 fimbriae present in the supernatant were precipitated with 4 vols ice-cold acetone. Proteins were collected by centrifugation, resuspended in PBS and stored at –80 °C until required. Fimbriae were prepared for SDS-PAGE analysis by boiling in acid (pH 2.0 adjusted by the addition of 2.0 M HCl) for 3 min. The preparation was then readjusted to pH 7.0 by the addition of 2.0 M NaOH and boiled for a further 3 min. SDS-PAGE analysis was performed as previously described (Ulett et al., 2006
). Polyclonal anti-F9 antiserum was raised in New Zealand White rabbits by intramuscular immunization as described elsewhere (Lam & Mutharia, 1994
). The primary immunization dose was 200 µg in 0.5 ml Freund's Adjuvant Complete (Sigma)/PBS (1 : 1, v/v) followed by three booster doses at 2 week intervals using 200 µg in 0.5 ml Freund's Adjuvant Incomplete (Sigma)/PBS (1 : 1, v/v).
Electron microscopy.
Cells for transmission electron microscopy (TEM) were prepared from freshly grown colonies or liquid suspensions resuspended in a drop of sterile ultra-pure water. A glow-discharged Formvar-coated copper grid was placed on the drop for 1 min to allow the cells to adsorb. Excess liquid was removed with filter paper before a drop of 1 % ammonium molybdate (negative stain) was placed on the grid. For immunoelectron microscopy bacteria were adsorbed onto glow-discharged carbon-coated copper grids for 5 min. Grids were placed on two drops of PBS (2 min) followed by 5 min on blocking buffer (PBS containing 0.2 % BSA, 0.2 % fish skin gelatin, 20 mM glycine). Samples were reacted with anti-F9 serum (1 : 100 diluted in blocking buffer) for 30 min and washed four times in blocking buffer (5 min). Samples were then incubated with anti-rabbit IgG gold conjugate (10 nm diameter, diluted 1 : 60 in blocking buffer) for 30 min and washed four times (5 min) in PBS followed by four washes (2 min) in water. Some grids were dried and observed unstained while others were negatively stained with 1 % ammonium molybdate. Cells were examined under a JEOL JEM1010 TEM operated at 80 kV. Images were captured using an analySIS Megaview III digital camera. SEM was performed essentially as previously described (Webster et al., 2004
).
| RESULTS |
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Agglutination and adherence properties of F9 fimbriae
The agglutination of erythrocytes is the classical assay for monitoring interactions between fimbrial adhesins and species-specific glycoproteins. MS1129 cells induced for F9 expression did not agglutinate erythrocytes from humans, dog, horse or sheep. Since the F9 genes display strong similarity to type 1 fimbrial genes we also tested their ability to agglutinate yeast cells. Yeast cell agglutination is the most highly conserved binding property for type 1 fimbriae. However, MS1129 cells were also unable to agglutinate yeast cells, indicating that unlike its FimH counterpart, the putative F9 adhesin does not bind to D-mannose. Arabinose-induced MS1129 cells were also unable to bind to human HeLa epithelial cells.
F9 fimbriae mediate biofilm formation
MS1129 cells were tested for their ability to form biofilms in standard microtitre plate assays as well as a continuous-flow chamber system. F9 fimbriae mediated strong biofilm formation in the hydrodynamic microtitre plate assay after growth in M9 medium (Fig. 2A
). Interestingly, we did not observe any biofilm formation when the same experiment was performed using LB medium (data not shown). SEM of the biofilms confirmed these results (Fig. 2B
). No significant biofilm was formed by the E. coli MS673 vector control strain (Fig. 2C
). The ability of F9 fimbriae to promote biofilm formation in dynamic conditions was examined using a continuous-flow chamber system. F9-expressing cells produced a dense and uniform biofilm that covered the entire surface of the flow cell with an average depth of 20 µm (Fig. 2D
). Taken together, these data demonstrate that F9 fimbriae mediate strong biofilm formation in E. coli K-12 cells employing two different model systems.
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-Red recombination of linear DNA (Datsenko & Wanner, 2000
18 kDa) as well as a minor band (
16 kDa) was observed (Fig. 4C
18 kDa) was confirmed to be the PapA2 major subunit protein of P fimbriae. We also identified the PapA protein as part of the minor band. However, we were unable to conclusively detect the F9 major subunit protein sequence as a minor component from the background trace of this N-terminal sequence; the background trace was at 10 % of the overall signal intensity. We also note that in experiments with plasmid-encoded pap gene clusters we did not observe any cross-reaction between our F9-specific antiserum and P fimbriae (data not shown). To confirm that the positive reaction in the Western blot was due to the presence of F9 fimbriae, we deleted the F9 genes from CFT073fim foc to construct CFT073fim foc f9. This strain produced a thick pellicle after three successive rounds of selection and enrichment by static growth. However, when the fimbriae of pellicle-enriched CFT073fim foc f9 were purified and probed by Western blot analysis using the F9 antiserum, no reaction was observed (Fig. 4D
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| DISCUSSION |
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The genes encoding F9 fimbriae are highly similar to those of type 1 and F1C fimbriae (Table 3
) and are arranged in a similar structural unit. A gene encoding a putative LysR-family transcriptional regulatory protein (ycjZ) lies 1620 bp upstream of c1936; however, at present there is no evidence to indicate that it plays a role in the regulation of F9 expression. The expression of other chaperone-usher class fimbriae in UPEC is phase variable, although the underlying regulatory systems are very different. Type 1 fimbriae expression is based on DNA inversion (Klemm, 1986
), whereas phase variation of P fimbriae depends on a combination of Dam methylation and the PapB and PapI regulators (Braaten et al., 1994
; Forsman et al., 1989
). F1C and S fimbrial expression is thought to be similar to that of P fimbriae although the exact regulatory mechanisms involved remain to be elucidated. We did not find any evidence based on DNA sequence analysis that F9 expression could be phase variable. There are no recombinase-encoding genes upstream of the F9 genes and the nearest GATC site lies 558 bp upstream of the predicted F9 major subunit start site.
Among the genome-sequenced E. coli strains available on the NCBI database, several, including F11 (ExPEC), O42 (EAEC), B171 (EPEC), B7A (ETEC), E110019, E22, E2348/69 (EPEC), EDL933 and RIMD 0509952 (EHEC), contain an intact F9 gene cluster. The deletion encompassing c1934–c1936 in MG1655 is common to W3110 (K-12) and HS (commensal strain). The recently sequenced UPEC strain UTI89 contains a unique deletion in the F9 cluster, which includes part of c1932, c1933 and part of c1934. Taken together, these genome sequence data suggest that the intact F9 gene cluster is found in many types of E. coli. These data also correlate with our observation that the c1931 and c1935 genes were highly prevalent in our UTI clinical strains. Our PCR strategy of screening for the c1931 and c1935 genes would have successfully identified strains that contained the MG1655 deletion. However, the newly identified smaller deletion in UTI89 would not have been identified by this approach. Thus, a more detailed analysis of the F9 genes is required to accurately determine the prevalence of the intact gene cluster in UPEC.
Previous work has demonstrated that the expression of one fimbrial type can repress the expression of other fimbriae, suggesting there may be a hierarchical structure associated with coordinated fimbrial expression (Holden & Gally, 2004
). For example PapB, the regulator of P fimbrial expression, can repress the expression of type 1 fimbriae (Xia et al., 2000
). Given the strong homology between type 1, F1C and F9 fimbriae, we deleted the type 1 and F1C fimbrial gene clusters in CFT073. Static growth of this strain (CFT073fim foc) induced the formation of a pellicle that consisted primarily of cells that produced P fimbriae derived from both pap gene clusters. To our knowledge, this is the first report to demonstrate that P fimbriae can promote pellicle growth. When the purified fimbriae present in the pellicle were tested by Western blotting a positive reaction was also obtained with our F9-specific antiserum, indicating the presence of the F9 major subunit protein. No F9 fimbriae were detected from pellicle preparations of the CFT073fim foc f9 triple mutant. Thus, although P fimbriae were the major fimbriae induced in CFT073fim foc static cultures, a low level of F9 fimbriae expression was also evident and made up a minor part of the total fimbriae purified from the cell pellicle.
UPEC are capable of forming biofilm-like structures within the superficial umbrella cells of the bladders of mice (Anderson et al., 2003
). These structures are associated with the expression of type 1 fimbriae and Ag43 and are thought to promote persistence in the urinary bladder (Eto et al., 2006
). In E. coli K-12, several cell-surface factors, including type 1 fimbriae (Kjaergaard et al., 2000a
; Schembri & Klemm, 2001
; Schembri et al., 2003
), flagella (Pratt & Kolter, 1998
), Ag43 (Kjaergaard et al., 2000a
; Schembri et al., 2003
) and curli (Vidal et al., 1998
), have been implicated in biofilm formation. It is likely that many of these factors also contribute to catheter-associated UTIs caused by UPEC. Here we demonstrate that F9 fimbriae mediate strong biofilm growth in a recombinant E. coli strain. The environmental conditions that activate the expression of F9 fimbriae in wild-type UPEC remain to be determined. However, it is noteworthy that several studies have reported increased expression of F9 genes in a variety of E. coli pathotypes. A recent microarray study identified the F9 genes as being upregulated in CFT073 isolated directly from the urine of infected mice (Snyder et al., 2004
). In E. coli O157 : H7, the F9 gene cluster is analogous to the loc8 locus (Dziva et al., 2004
; Low et al., 2006a
). Expression of the F9 genes was analysed by chromosomally integrated lacZ promoter fusions and shown to be enhanced during biofilm growth and during growth at 28 °C (as opposed to 37 °C) (Low et al., 2006b
). Here we demonstrate that F9 fimbriae promote biofilm growth. Consistent with our findings, Low et al. (2006b)
also did not find any evidence of phase variation from the F9 promoter. In other studies, the F9 genes have been reported to be important for the colonization of calves by E. coli O157 : H7 and O26 (Dziva et al., 2004
; van Diemen et al., 2005
) and F9 fimbriae were shown to mediate adherence to bovine epithelial cells (Low et al., 2006a
). However, in contrast to the bundle-like arrangement of F9 fimbriae at the cell pole observed when the E. coli O157 : H7 F9 genes were expressed in E. coli K-12 (Low et al., 2006a
), the F9 fimbriae produced by our recombinant strain MS1129 were arranged peritrichously on the cell surface, with a length varying between 0.2 and 2 µm. Furthermore, we did not observe a difference in the amount of F9 major subunit protein produced following static growth of the CFT073fim foc mutant at 28 °C and 37 °C (data not shown).
In summary, the genes encoding F9 fimbriae are commonly found in UPEC and other types of pathogenic E. coli. Several studies, including the present work, have now demonstrated expression of the F9 genes in E. coli (Dziva et al., 2004
; Low et al., 2006a
, b
; Snyder et al., 2004
; van Diemen et al., 2005
). One function of F9 fimbriae is their ability to mediate strong biofilm growth. Further molecular characterization of the F9 genes is now required to investigate how their expression is regulated in relation to other fimbriae and to assess their function in wild-type E. coli.
| ACKNOWLEDGEMENTS |
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Edited by: M. P. Stevens
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Received 26 November 2006;
revised 1 March 2007;
accepted 2 March 2007.
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