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1 Citrus Research and Education Center, Institute of Food and Agricultural Sciences (IFAS), University of Florida, 700 Experiment Station Road, Lake Alfred, FL 33850, USA
2 Department of Plant Pathology, National Chung-Hsing University, Taichung 402, Taiwan
3 Department of Plant Pathology, Institute of Food and Agricultural Sciences (IFAS), University of Florida, 700 Experiment Station Road, Lake Alfred, FL 33850, USA
Correspondence
Kuang-Ren Chung
krchung{at}ufl.edu
| ABSTRACT |
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The GenBank/EMBL/DDBJ accession numbers. for the CTB5, CTB6 and CTB7 sequences of Cercospora nicotianae are DQ991507, DQ991508 and DQ991509 respectively.
| INTRODUCTION |
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Based on substrate feeding experiments (Okubo et al., 1975
) cercosporin has been proposed to be synthesized by a fungal polyketide pathway. However, the genes or enzymes involved in cercosporin production remain largely unknown. Recent studies with molecular and genetic tools began to uncover the cercosporin biosynthetic pathway and regulation network (Daub et al., 2005
). Light has long been known to be required for cercosporin toxicity. Biosynthesis of cercosporin is also primarily triggered by light (Jenns et al., 1989
). In order to elucidate cercosporin biosynthesis and regulation at molecular levels, several cercosporin-deficient mutants were identified via a restriction-enzyme-mediated mutagenesis approach (Chung et al., 2003b
). As a result, two linked genes, CTB1 (encoding a polyketide synthase) and CTB3 (encoding a dual methyltransferase/monooxygenase) that were required for cercosporin biosynthesis were identified and characterized from Cercospora nicotianae (Choquer et al., 2005
; Dekkers et al., 2007
). We later obtained nine additional ORFs beyond the boundaries of CTB1 and CTB3 by combining chromosome walking and sequence analysis. Six of them (CTB2, CTB4, CTB5, CTB6, CTB7 and CTB8) encode polypeptides proposed to be involved in cercosporin production (Chen et al., 2007
). Expression of eight of the genes was induced under cercosporin-producing conditions and was co-ordinately regulated by the Zn(II)Cys6 transcriptional activator, CTB8 (Chen et al., 2007
). We hypothesize that cercosporin, like many fungal secondary metabolites (Keller et al., 2005
), is synthesized by a cluster of co-regulated genes, in this case designated the cercosporin toxin biosynthesis (CTB) gene cluster. The functions of CTB1, CTB2, CTB3, CTB4 and CTB8 in cercosporin biosynthesis have been unambiguously demonstrated by analysing the respective null mutants (Chen et al., 2007
; Choquer et al., 2005
, 2007
; Dekkers et al., 2007
). The functions of CTB5, CTB6 and CTB7, which encode proteins similar to numerous FAD/FMN- or NADPH-dependent oxidoreductases or dehydrogenases, remain to be elucidated. In the present study, we characterized these genes by creating loss- and gain-of-function strains; we present conclusive evidence to demonstrate their roles in cercosporin biosynthesis, and completely define the core CTB gene cluster.
| METHODS |
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Cercosporin analysis.
Cercosporin was extracted with 5 M KOH or with ethyl acetate from agar plugs with mycelia as described previously (Choquer et al., 2005
; Chung, 2003
). Cercosporin in KOH extracts was quantified by measuring A480 using a Genesys 5 spectrophotometer (Spectronic Instruments). Ethyl acetate extracts were analysed on a TLC plate coated with a 60 F254 fluorescent silica gel with ethyl acetate/hexane/methanol/H2O (6 : 4 : 1.5 : 1, by vol.) as a solvent (Choquer et al., 2005
).
CTB5, CTB6 and CTB7 gene disruption.
A strategy employing the split-hygromycin phosphotransferase B gene (HYG) marker fused with truncated CTB5, CTB6 or CTB7 fragments was used for targeted gene disruption in C. nicotianae as described previously (Choquer et al., 2005
). All DNA clones were built on the backbone of pGEM-T easy vector (Promega). For CTB5 disruption, a 3.3 kb fragment was amplified with primers CTB5R (5'-GCTACAGTGCGACGGAGTCCTG-3') and CTB7I (5'-CTCGGCCGCGAGAAGGCTT-3') from genomic DNA and cloned to yield pCTB5. A 1.0 kb HindIII–AgeI fragment in pCTB5 was replaced with a 1.6 kb BamHI, end-filled fragment harbouring the HYG cassette from pUCATPH [obtained from the Fungal Genetics Stock Center (FGSC), University of Missouri, Kansas City, MO, USA] to generate the disruption construct, pctb5. Two truncated HYG and CTB5 fusion fragments overlapping within the HYG region (800 bp) were amplified by PCR from pctb5, and directly transformed into wild-type C. nicotianae for gene disruption. A 2.3 kb fragment containing 5' CTB5 fused with 3' HYG was amplified with primers CTB7I and Hygsplit2 (5'-CCGACAGTCCCGGCTCCGGATCGG-3'); a 2.1 kb fragment containing 5' HYG fused with 3' CTB5 was amplified with primers CTB5R and Hygsplit1 (5'-AGGAGGGCGTGGATATGTCCTGCGGG-3').
For CTB6 disruption, a 2 kb fragment was amplified with primers ctb6F (5'-CAAACGCAGATACCTCGCCGCATG-3') and mfs4 (5'-GCAAATTCTGAGGATTTCCCTTG-3'), and cloned to form pCTB6. A 0.5 kb BglII–HindIII fragment in pCTB6 was replaced with the HYG cassette to generate p
ctb6. Two fragments, of 1.7 and 1.9 kb, overlapping within HYG, were obtained from p
ctb6 with primers ctb6F and hygsplit1 and mfs4 and hygsplit2, respectively.
For CTB7 disruption, a 5 kb fragment was amplified with primers tf4 (5'-CCATGAAGCGAGATGC-3') and ord3 (5'-CGTATACCGCTACCCATGTCGTAC-3'), and cloned to become pCTB7. A 0.9 kb Eco47III fragment was replaced with the HYG cassette to yield the disruption construct, p
ctb7. Split-HYG marker fragments, of 2.5 and 1.5 kb, were amplified from p
ctb7 with primers tf4 and hygsplit1 and ord3 and hygsplit2, respectively.
Complementation and fungal transformation.
The full-length CTB5, CTB6 or CTB7 ORF, including the corresponding endogenous promoter, was independently amplified with gene-specific primers by a high-fidelity DNA polymerase (Roche Applied Science). Genetic complementation was performed by co-transformation of a PCR fragment with the pCB1532 plasmid carrying the Magnaporthe grisea acetolactate synthase gene (SUR) cassette for sulfonylurea resistance (Sweigard et al., 1997
, obtained from FGSC) into
ctb5-D8,
ctb6-D18 or
ctb7-D2 null mutants. Transformants were selected against sulfonylurea and screened for cercosporin production. Fungal protoplasts were prepared and transformed using CaCl2 and PEG by methods described previously (Chung et al., 2002
). Transformants were selected on medium containing 250 µg hygromycin ml–1 (Roche), or 5 µg chlorimuron ethyl ml–1 (Chem Service) as appropriate and tested for cercosporin production on PDA plates (Chung, 2003
).
Sequence analysis.
Fungal DNA was isolated with a DNeasy Plant Mini kit (Qiagen). Full-length CTB5, CTB6 or CTB7 was amplified with the respective primers as described above and cloned into pGEM-T easy vector (Promega) for sequence analysis from both directions at Eton Bioscience. PCR primers were synthesized by Integrated DNA Technologies. Searches for sequence similarity and functional domains were performed with web-based software programs as described previously (Chen et al., 2007
). Sequence data from this study have been deposited with the EMBL/GenBank Data Libraries under accession nos. DQ991507 (CTB5), DQ991508 (CTB6) and DQ991509 (CTB7).
Molecular techniques.
Standard procedures were used for endonuclease digestion of DNA, electrophoresis, and Southern and Northern blot hybridization. The hybridization probes were generated by PCR with gene-specific primers to incorporate DIG-11-dUTPs (Roche) into CTB1, CTB5, CTB6, CTB7 or CTB8 DNA fragments as previously described (Choquer et al., 2005
; Chen et al., 2007
). The conditions and procedures for probe labelling, hybridization, post-hybridization washing and immunological detection of the probe with a disodium 3-[4-methoxyspiro{1,2-dioxetane-3,2'-(5'-chloro)tricyclo[3.3.1.1]decan}-4-yl]phenyl phosphate (CSPD) chemiluminescent substrate for alkaline phosphatase were carried out according to the manufacturer's instructions (Roche).
Pathogenicity assay.
Assay for fungal pathogenicity was carried out on detached tobacco leaves (Nicotiana tabacum Burley 21) with conidia suspensions (5x104 conidia ml–1) as described previously (Choquer et al., 2005
).
| RESULTS |
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The CTB7 ORF consists of 1401 bp interrupted by a single intron of 48 bp and is predicted to encode a protein of 450 aa. The translation product of CTB7 has 22–33 % identity and 38–51 % similarity to a wide variety of FAD/FMN-dependent oxidoreductases, hydrolases, or monooxygenases of fungi and bacteria. CTB7 has two FMN/FAD or flavin-containing monooxygenase-binding sites and an amidation site (Fig. 2
).
Disruption of the CTB5, CTB6 and CTB7 genes
Targeted gene disruption was performed to evaluate the functions of CTB5, CTB6 and CTB7 associated with cercosporin production in C. nicotianae. Transformants were screened for cercosporin production on a thin PDA plate. In total, 53 of 202 (26 %) transformants recovered from CTB5 disruption, 10 of 141 (7.1 %) from CTB6 disruption, and 3 of 16 (19 %) from CTB7 disruption were completely defective in cercosporin accumulation.
Successful disruption of each CTB locus was validated by Southern blot analysis. Hybridization of EcoRI/HindIII-digested genomic DNA from the wild-type and six putative ctb5 disruptants to a CTB5 gene probe identified a 3.0 kb band in wild-type (Fig. 3a, b
). In contrast, all transformants had a 2.4 kb hybridizing band instead, due to the insertion of HYG within CTB5 and the presence of an additional EcoRI site in the HYG gene cassette. Three hybridizing bands, >4 kb (indicated by arrowheads in Fig. 3b
), in DNA prepared from the ctb5-D1 and D9 disruptants, were due to the ectopic integrations of split marker fragments in the genome. Northern blot analysis of total RNA from two ctb5 disruptants also confirmed the null mutation at CTB5 (Fig. 3c
).
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ctb6 disruptants due to the presence of an extra NcoI site in the inserted HYG fragment. The hybridization patterns confirmed a successful disruption at the CTB6 locus. Hybridizing bands (>2.0 kb and <1.5 kb) due to the ectopic integration of PCR fragments were detected in DNA prepared from the ctb6-D4 disruptant. Northern blot hybridization of total RNA from two ctb6 disruptants further validated the null mutation at CTB6 (Fig. 4c
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ctb7-D1, D4 and D7 disruptants. Hybridization of total RNA from wild-type and two ctb7 disruptants to a CTB7 probe also confirmed the null mutation at CTB7 (Fig. 5c
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Cercosporin production
The amounts of cercosporin in KOH extracts were determined, revealing that the absorbance values obtained from the ctb5, ctb6 or ctb7 disruptants were indistinguishable from the controls (agar plugs only) and were considered to be zero (Table 1
). To determine if a trace amount of cercosporin was produced by the disrupted mutants, cercosporin was extracted by ethyl acetate from agar plugs with fungal mycelia and the extracts were analysed by TLC. As shown in Fig. 6
, the wild-type and the CTB5-, CTB6- and CTB7-complemented strains produced a red pigment (cercosporin), whereas the ctb5, ctb6 or ctb7 disruptants produced no detectable cercosporin. Thus, disruption of the CTB5, CTB6 or CTB7 gene completely blocked cercosporin biosynthesis, but disruptants accumulated a yellowish or purplish pigment that was barely visible on fluorescent-TLC plates (Fig. 6
).
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Pathogenicity
As assayed on detached tobacco leaves, the ctb5, ctb6 or ctb7 disruptants caused fewer lesions compared to the wild-type. However, the complementation strains incited necrotic lesions on tobacco, indistinguishable from those induced by the wild-type (data not shown).
| DISCUSSION |
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Although the biochemical function of CTB5, CTB6 and CTB7 as oxidoreductases remains to be proven, molecular and genetic analyses clearly indicated that they were required for cercosporin biosynthesis. A prior study revealed that accumulation of CTB5, CTB6 and CTB7 transcripts was co-ordinately controlled by the CTB8 transcriptional activator (Chen et al., 2007
). In the present study, disruption of CTB5, CTB6 or CTB7 yielded mutants that were completely impaired in cercosporin production, yet retained the wild-type level of resistance to cercosporin and other singlet-oxygen-generating photosensitizers. We have also demonstrated that disruption of each of the CTB5, CTB6 or CTB7 genes markedly reduces transcriptional accumulation of the other CTB gene transcripts, consistent with the previous finding of the presence of a feedback inhibition mechanism (Chen et al., 2007
). However, it appears that such inhibition was not completely stringent since expression of CTB6 was slightly reduced in two ctb5 null mutants, but completely undetectable in the ctb7 null mutants (Fig. 7
). Furthermore, expression of CTB8 was apparently down-regulated in the ctb5 or ctb6 null mutants, but was normal in the ctb7 mutants (Fig. 8
).
CTB5 has amino acid similarity to many oxygen- and FAD/FMN-dependent oxidoreductases of bacteria and fungi, including vanillyl-alcohol oxidases, D-lactate dehydrogenases, 6-hydroxy-D-nicotine oxidases (accession nos. P56216, P06149, ZP_00522304, and CAA29416), and mitomycin radical oxidases of Streptomyces (accession no. P43485). These enzymes catalyse the oxidation of a wide variety of substrates for energy production and conversion (Rule et al., 1985
; van den Heuvel et al., 2000
). The mitomycin radical oxidase, however, oxidizes the reduced form of mitomycins and is involved in cellular self-defence against mitomycin in Streptomyces lavendulae (August et al., 1994
). The enzyme encoded by CTB5 is proposed to utilize FAD and/or FMN as a cofactor and catalyse the oxidation steps in the cercosporin biosynthetic pathway. CTB5 has a putative TonB-dependent receptor signature. The TonB protein is involved in the passive uptake of large and low-affinity substrates by interacting with outer-membrane receptors in Escherichia coli (Bell et al., 1990
). Without TonB, the receptors bind their substrates but fail to transport them into the periplasmic space. In addition, CTB5 also has a tyrosine sulfation site that is physiologically associated only with proteins or domains that are transported or reside in the Golgi lumen (Huttner, 1988
). It will be interesting to determine how those domains contribute to CTB5 function.
The protein encoded by CTB6 displays considerable similarity to numerous NADPH-dependent reductases, oxidoreductases or dehydrogenases in bacteria, yeasts and plants. Some members include aldehyde reductases, nucleoside-diphosphate sugar epimerases, carbonyl reductases, dihydroflavonol 4-reductases and cinnamyl-alcohol dehydrogenases (accession nos. 1Y1PA, XP_71038, ZP_00592614, and ZP_00528210). A computer search identified an alcohol dehydrogenase (adh) family signature and a NADPH-binding motif in CTB6. A CTB6 homologue in Saccharomyces cerevisiae (accession no. NP_011476) was thought to catalyse NADPH-dependent reduction of the bicyclic diketone bicyclo[2,2,2]octane-2,6-dione to the chiral ketoalcohol-6-hydroxybicyclo[2,2,2]octane-2-one (Goffeau et al., 1996
). It is tempting to speculate that the CTB6 enzyme catalyses an NADPH-dependent reduction or hydration step during ring closure of pentaketide in the cercosporin biosynthetic pathway.
The translation product of CTB7 has an amidation site and two FMN/FAD or flavin-containing monooxygenase-binding sites. Proteins having similarity to the CTB7 include flavoprotein monooxygenases and pyridine nucleotide-disulfide oxidoreductases of Pseudomonas (accession nos. YP_2333205 and YP_272409), and FAD-dependent oxidoreductases of Xanthomonas (accession nos. YP_363434 and AAM36534). CTB7 also has similarity to a Xanthomonas campestris pv. zinniae oxidoreductase (accession no. AAY86766) which has recently been shown to be involved in cercosporin degradation (Taylor et al., 2006
). We propose that the function of CTB7 in the cercosporin biosynthetic pathway is probably to catalyse a hydration or reduction step during ring closure to form the polyketomethylene skeleton of cercosporin prior to the methylation steps.
Biosynthetic gene clusters often include one or more genes for cellular self-protection in some fungi. For example, TRI12 is an efflux pump that is involved in self-protection against trichothecene in Fusarium sporotrichioides (Alexander et al., 1999
), and TOXA is a putative HC-toxin transporter in Cochliobolus carbonum (Pitkin et al., 1996
). Cercosporin is toxic to many cells due to the production of singlet oxygen; however, Cercospora species are very resistant to cercosporin (Daub et al., 2005
). The mechanisms involved in cercosporin resistance have been attributed to the ability of Cercospora species to transiently reduce cercosporin, perhaps via membrane reductases (Daub et al., 1992
, 2000
; Leisman & Daub, 1992
; Sollod et al., 1992
). Recently, expression of a yeast FAD-dependent reductase in tobacco conferred resistance to cercosporin (Panagiotis et al., 2007
). Despite the fact that the CTB5, CTB6 and CTB7 genes encode putative oxidoreductases, targeted gene disruption indicated that none of them is responsible for cercosporin self-resistance. Loss of the ability to synthesize cercosporin was the only phenotypic change caused by mutation of the CTB5, CTB6 or CTB7 genes. Conidiation of ctb5, ctb6 and ctb7 disruptants was not affected (data not shown). Finally, the ctb5, ctb6 and ctb7 disruptants produced fewer lesions compared to the wild-type on tobacco leaves, consistent with previous findings that cercosporin is an important virulence factor (Chen et al., 2007
; Choquer et al., 2005
, 2007; Dekkers et al., 2007
).
| ACKNOWLEDGEMENTS |
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Edited by: M. Tien
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Received 22 February 2007;
revised 3 April 2007;
accepted 17 April 2007.
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