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Instituto de Biología Molecular y Celular de Rosario, Consejo Nacional de Investigaciones Científicas y Técnicas, Departamento de Microbiología, Facultad de Ciencias Bioquímicas y Farmacéuticas, Universidad Nacional de Rosario, Suipacha 531, S2002LRK-Rosario, Argentina
Correspondence
Fernando C. Soncini
soncini{at}ibr.gov.ar
| ABSTRACT |
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copA strain, a second Salmonella-specific P-type ATPase, GolT, can substitute the copper transporter, diminishing the effect of its deletion. The overall results highlight the importance of the cue system for controlling intracellular copper stress. The observed differences between Salmonella and E. coli in handling copper excess may contribute to our understanding of the distinct capability of these related pathogenic bacteria to survive outside the host.
These authors contributed equally to this work.
| INTRODUCTION |
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The E. coli cus regulon was found to play a role in maintaining copper homeostasis under anaerobic conditions, when the oxidase CueO is inactive (Outten et al., 2001
). The CusR/CusS system is predicted to monitor the periplasmic concentration of the metal ion, to modulate the expression of an RND-type copper efflux pump, encoded by the cusCFBA operon (Franke et al., 2003
; Munson et al., 2000
). Recently, it was shown that transcription of a second, uncharacterized, two-component system, encoded by the yedWV operon, is activated by copper ions in a CusR-dependent manner (Yamamoto & Ishihama, 2005
), although its role in copper tolerance remains unclear.
Other stress-response regulatory systems, such as CpxR/CpxA and SoxR/SoxS, have been found to be induced by the addition of copper (Kershaw et al., 2005
; Yamamoto & Ishihama, 2005
), probably as a result of cellular damage caused by the metal ion (Macomber, 2007
)
In this work, we have characterized the Salmonella enterica serovar Typhimurium (S. Typhimurium) response to copper. Previous reports revealed the importance of the multicopper oxidase (named CuiD in Salmonella) and the transcriptional regulator CueR/SctR for copper tolerance (Kim et al., 2002
; Lim et al., 2002
). Here, we demonstrate that expression of CopA in Salmonella depends on CueR, and that this transporter and the multicopper oxidase CuiD are essential for full copper tolerance under both aerobic and anaerobic conditions. We also provide evidence that, in the absence of a functional CopA, the Salmonella-specific P-type ATPase GolT compensates for the deficiency directing active efflux of copper.
| METHODS |
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The cueR locus was PCR-amplified from the Salmonella chromosome using the primers cueR-ORF-F (5'-GAGGATCCATATGAATATTAGCG-3') and cueR-ORF-R (5'-ACCCAAGCTTCAACGTGGCTTTTGC-3'). The amplified fragment was cloned into pUH21-2 laqIq to generate the cueR-expression plasmid pCUER (pPB1205). Plasmid DNA was introduced into bacterial strains by electroporation using a Bio-Rad apparatus, following the manufacturer's recommendations.
Copper induction and inhibition assays.
β-Galactosidase assays were carried out essentially as described by Miller (1972)
. For metal-sensitivity assays, a 5x10–7 dilution from overnight culture of the wild-type or each mutant strain was done in PBS. A 30 µl aliquot was applied on LB plates containing increasing concentrations of CuSO4. Plates were incubated at 37 °C for 40 h under aerobic conditions or 64 h under anaerobic conditions. Anaerobic environments were generated in a Gaspak jar system using AnaeroGen sachets (Oxoid). Anaerobic indicators (Oxoid) were employed to verify oxygen consumption, following the manufacturer's recommendations. After incubation, c.f.u. per ml were calculated and the percentage survival was estimated based on the count of the corresponding strain grown in the absence of metal added (Checa et al., 2007
).
CueR purification.
Salmonella CueR was overproduced and purified from the wild-type strain carrying plasmid pCUER grown in the presence of 1 mM IPTG essentially as described previously (Outten et al., 2000
). All procedures were carried out at 4 °C. The protein profile of the purified proteins was determined by SDS-PAGE. Protein concentration was determined by Bradford assay, using BSA as standard.
RNA isolation and primer extension.
Total RNA was extracted from mid-exponential-phase cultures (OD600 0.4–0.6) of wild-type S. Typhimurium and its isogenic
cueR mutant strain grown in LB medium with or without the addition of 1 mM CuSO4 as previously described (Aguirre et al., 2000
). cDNA synthesis was performed using 2 pmol of the 32P-end-labelled primer PROM-copA-R (5'-CCCAAGCTTCGCCAGCTCAACATC-3'), with 100 µg total RNA and 1 U SuperScript II RNaseH2 reverse transcriptase (Life Technologies). The extension products were analysed by electrophoresis on a 6 % polyacrylamide-8 M urea gels and compared with sequence ladders initiated with the same 32P-labelled primer that was used for primer extension.
Protein–DNA interaction analysis.
Electrophoretic gel mobility shift assays (EMSAs) were performed essentially as previously described (Lejona et al., 2003
). DNA fragments (343 bp for the copA promoter region) were PCR-amplified using the primers PROM-copA-F (5'-CCGGAATTCGGTGCGATAACCATT-3') and PROM-copA-R (5'-CCCAAGCTTCGCCAGCTCAACATC-3'). Labelled DNA was incubated at room temperature for 20 min with purified CueR in the amounts indicated in the figure. The binding buffer used for protein–DNA interactions contained 25 mM Tris/HCl (pH 8.0), 50 mM NaCl, 5 mM MgCl2, 5 mM DTT and 10 % glycerol. Samples were run on an 8 % non-denaturing Tris/glycine polyacrylamide gel at room temperature. After electrophoresis, the gel was dried and autoradiographed.
DNase I footprinting assay.
DNase I protection assays were done for both DNA strands essentially as previously described (Aguirre et al., 2000
; Lejona et al., 2003
). Binding reactions with different amounts of purified CueR protein and 6 fmol labelled DNA were performed as described for the EMSAs. Then 0.05 U DNase I (Life Technologies) was added in a final volume of 100 µl. After incubation for 1 min at room temperature, the reaction was stopped by adding 90 µl of 20 mM EDTA (pH 8), 200 mM NaCl and 100 µg tRNA ml–1 . DNA fragments were purified by phenol/chloroform extraction and resuspended in 5 µl H2O. Samples (5 µl) were analysed by denaturing polyacrylamide (6 %) gel electrophoresis by comparison with a DNA sequence ladder generated with the appropriate primer.
| RESULTS |
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golS strain, confirming that CueR controls the expression of the Cu(I) transporter CopA in Salmonella. A similar result was obtained using a cuiD-lacZ reporter whose expression also depends on CueR (Fig. 1c
cueR strain (Fig. 1b
|
cueR mutant cells grown in the presence or absence of CuSO4. A single primer extension product, corresponding to a G residue located 26 nt upstream of the copA start codon, was observed only in samples obtained from the wild-type strain grown in the presence of copper ions (Fig. 2a
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CopA and CuiD are essential for copper tolerance under both aerobic and anaerobic conditions
We performed copper-sensitivity assays under both aerobic and anaerobic conditions using different mutant strains in the CueR-regulated genes. In the presence of oxygen, copper tolerance decreased in strains carrying mutations in either cueR, copA or cuiD, although the latter strain showed the most severe phenotype (Table 3
). Copper susceptibility increased even more in the cuiD copA double mutant strain, supporting the relevant role of both proteins in maintaining copper homeostasis. The marked copper susceptibility of the single cuiD mutant compared with the
cueR or the
copA strains suggests that even basal levels of CuiD are enough to guarantee survival in copper-rich medium, and supports the crucial role assigned to this enzyme for copper tolerance under aerobic conditions in Salmonella (Lim et al., 2002
).
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We observed that under anaerobic conditions copper inhibited the bacterial growth even more strongly than under aerobic conditions (Table 3
), as was previously observed in E. coli (Beswick et al., 1976
; Outten et al., 2001
; Rensing & Grass, 2003
). This supports the notion that copper injury to bacterial cells cannot be mediated exclusively by oxidative DNA damage (Macomber et al., 2007
).
The Salmonella YedW/YedV system is not involved in copper homeostasis
Salmonella lacks the ancillary copper-detoxification cus system, but conserves genes homologous to the E. coli yedWV operon, STM1096 and STM1095 (Table 1
). The yedWV operon encodes a two-component system, transcription of which in E. coli is activated by copper ions (Yamamoto & Ishihama, 2005
).
We analysed whether YedW/YedV contributed to maintaining copper homeostasis in Salmonella, testing survival of the
yedWV mutant strain in the presence of CuSO4 (Table 3
). yedWV expression is not induced by addition of up to 2 mM CuSO4 (data not shown). Moreover, deletion of yedWV does not affect copper tolerance of the wild-type strain or of the
cueR or the
cueR
golS mutants (see below), under either aerobic or anaerobic conditions, arguing against a role of this operon in copper homeostasis in Salmonella.
The gold transporter GolT can contribute to copper tolerance in the absence of CopA
We have recently shown that Salmonella has a second CueR homologue highly sensitive to gold ions, GolS, which induces the expression of a CopA-homologous protein, GolT, and a putative metal-binding protein, GolB (Checa et al., 2007
). We found that this Salmonella-specific regulon is required for gold resistance, but not for copper tolerance, except in a strain in which the main copper transporter CopA has been deleted (Checa et al., 2007
; see also Table 3
). These results prompted us to investigate whether some of the GolS-controlled genes, including golS, would acquire relevance in copper homeostasis when the ancestral copper-detoxification system cue is inactive or absent. We constructed a series of mutant strains in which copA and the different genes coding for components of the gol regulon were deleted. As seen in Table 3
, only the deletion of the P-type metal transporter gene golT rendered a marked reduction in copper tolerance in a
copA strain. Moreover, the simultaneous deletion of the two transporter genes, copA and golT, further increased the susceptibility of a copA cuiD mutant strain. The contribution of GolT to copper detoxification in the absence of a functional CopA was also observed in cells grown under anaerobic conditions (Table 3
). Unlike golT, deletion of golB did not affect metal tolerance of a
copA strain, but slightly reduced survival of a strain with both CopA and GolT transporters deleted (Table 3
). Neither single mutants in GolS-regulated genes, nor a mutant with the whole gol locus deleted, altered Salmonella copper susceptibility of a cuiD or a wild-type background (Table 3
). In accordance, deletion of the gold-sensor gene golS had only a minor effect on copper tolerance in a
cueR mutant strain (Table 3
), which was only evident in liquid media and under aerobic conditions (Fig. 3a
).
|
copA backgrounds (Fig. 3b
copA strain compared with the levels obtained in the wild-type strain. This induction was dependent on the intactness of golS (Fig. 3b
copA
golS mutant when compared with the single mutants (Table 3| DISCUSSION |
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The E. coli yedWV orthologous genes, although present in Salmonella (Table 2
), are neither required for copper tolerance (Table 3
) nor induced under excess of copper (data not shown). The above observations, in addition to the absence of E. coli cus homologues in all sequenced Salmonella serovars (Table 2
and http://www.sanger.ac.uk/Projects/Salmonella/), highlight differences between these closely related enterobacteria in the approach used to control copper excess, in particular, in conditions where the cue system is overloaded.
In a previous report, we characterized the gol regulon that confers resistance to gold ions and demonstrated that, in the absence of the native copper transporter CopA, survival of a strain with the whole gol locus deleted is impaired in the presence of CuSO4 (Checa et al., 2007
). Nevertheless, deletion of the gol locus did not affect copper tolerance of a wild-type or a
cuiD mutant strain. In this work, we characterized the role of the gol regulon in copper detoxification in more detail. We found that among the GolS-regulated factors, the P-type ATPase GolT is mainly responsible for alleviating copper toxicity in a
copA mutant strain under both aerobic and anaerobic conditions (Table 3
), probably by directing active efflux of the metal ions from the cytoplasm. Our results suggest that in the absence of the main copper transporter CopA, the intracellular copper concentration increases, as was previously suggested to occur in E. coli (Stoyanov et al., 2003
). This leads to the copper-mediated activation of GolS, enhancing the expression of its target genes (Fig. 3
), including golT, which would extrude the excess of copper, mimicking the action of CopA. A number of observations indicate, however, that the contribution of the gol system to copper homeostasis in nature would be incidental and lacks physiological relevance. Copper-dependent activation of the gol regulon was only observed when the major copper transporter CopA was deleted (Fig. 3b
). In addition, golT and golS are absent in S. Typhi (Table 2
) and S. Paratyphi A. The lack of part of the gol regulon in these two serovars of S. enterica subspecies I, which are well-known human-adapted pathogens (Parkhill & Thomson, 2003
), supports the notion that this regulon allows Salmonella to gain access to different environmental niches. On the other hand, the two metal transporters CopA and GolT are structural and functional homologues: they share 42 % identity at protein level (Table 2
) and both are able to mediate either copper or gold resistance under certain conditions (Table 3
; Checa et al., 2007
). Therefore, it is highly unlikely that GolT could physiologically replace the absent cus system in Salmonella.
The periplasmic space of Gram-negative bacteria has been proposed to be an important target for copper toxicity, because two of the three copper-resistance systems from E. coli, CueO and CusCFBA, work by removing Cu(I) from this compartment (Franke et al., 2003
; Outten & O'Halloran, 2001
; Rensing & Grass, 2003
). Therefore, it will be interesting to know how Salmonella, which lacks the cus system, can avoid periplasmic copper stress under anaerobic conditions when the multicopper oxidase is inactive. The complete elucidation of the mechanisms employed by Salmonella to eliminate the excess of copper and the differences from those previously described in E. coli will contribute to better understanding of the distinct lifestyles of these related bacteria.
| ACKNOWLEDGEMENTS |
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Edited by: J Green
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Received 29 January 2007;
revised 8 May 2007;
accepted 15 May 2007.
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