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Supplementary data

The phagosomal nutrient transporter (Pht) family, by D. E. Chen, S. Podell, J.-D. Sauer, M. S. Swanson and M. H. Saier, Jr

Microbiology vol. 154, part 1, pp. 42-53

Fig. S1. Multiple alignment of the members of the Pht family.

Fig. S2. Mean hydropathy (black line, top), amphipathicity (light grey line, top) and similarity (bottom) plots for the Pht family, based on the multiple alignment shown in Fig. S1. The AveHas program (Zhai & Saier, 2001) was used to derive the plot. Bars above the 12 peaks of hydrophobicity correspond to the 12 putative TMSs.

Fig. S3. Multiple alignment of the members of the UMF9 family.

Fig. S4. Mean hydropathy (black line, top), amphipathicity (light grey line, top) and similarity (bottom) plots for the UMF9 family, based on the multiple alignment shown in Fig. S3. The AveHas program (Zhai & Saier, 2001) was used to derive the plot. Bars above the 12 peaks of hydrophobicity correspond to the 12 putative TMSs.

Table S1. Proteins of the Pht family arranged alphabetically according to protein abbreviation.

Table S2. Proteins of the UMF9 family arranged alphabetically according to protein abbreviation.

Table S3. Codon usage table for (1) the pma1 gene and (2) the genome of Prochlorococcus marinus.

Table S4. Codon usage table for (1) the cbu9 gene and (2) the genome of Coxiella burnetii.

Table S5. Codon usage table for (1) the phtJ gene and (2) the genome of Legionella pneumophila.

Table S6. Codon usage table for (1) the ftu4 gene and (2) the genome of its source organism.

Table S7. Codon usage table for (1) the ftu5 gene and (2) the genome of its source organism.

Table S8. Codon usage table for (1) the ftu3 gene and (2) the genome of its source organism.

Table S9. Codon usage table for (1) the ftu6 gene and (2) the genome of its source organism.

Table S10. Codon usage table for (1) the zmo1 gene and (2) the genome of its source organism.

Table S11. Codon usage table for (1) the pam1 gene and (2) the genome of its source organism.

Table S12. Codon usage table for (1) the phtG gene and (2) the genome of its source organism.

Table S13. Codon usage table for (1) the phtK gene and (2) the genome of its source organism.

Table S14. Codon usage table for (1) the pth1 gene and (2) the genome of its source organism.

Table S15. Codon usage table for (1) the dar1 gene and (2) the genome of its source organism.

Table S16. Codon usage table for (1) the tde1 gene and (2) the genome of its source organism.

Table S17. Codon usage table for (1) the aeh1 gene and (2) the genome of its source organism.

Reference

Zhai, Y. & Saier, M. H., Jr (2001). A web-based program for the prediction of average hydropathy, average amphipathicity and average similarity of multiply aligned homologous proteins. J Mol Microbiol Biotechnol 3, 285-286. Medline

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