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Institut für Molekulare Mikrobiologie und Biotechnologie, Westfälische Wilhelms-Universität Münster, Corrensstr. 3, D-48149 Münster, Germany
Correspondence
Friedhelm Meinhardt
meinhar{at}uni-muenster.de
| ABSTRACT |
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fcy1 mutants, lacking cytosine deaminase, became entirely resistant to 5FC, concomitantly losing 5FC+FLC additivity. Disruption of the orotate phosphoribosyltransferase gene (URA5) in the wild-type led to low-level 5FC tolerance, while an alternative orotate phosphoribosyltransferase, encoded by URA10, contributed to 5FC toxicity only in the
ura5 background. Remarkably, combination of
ura5 and
fur1 resulted in complete 5FC resistance. Thus, yeast orotate phosphoribosyltransferases are involved in 5FC metabolism. Similarly, disruption of the ergosterol
5,6-desaturase-encoding gene ERG3 resulted only in partial resistance to FLC, and concomitantly a synergistic effect with 5FC became evident. Full resistance to FLC occurred in
erg3
erg11 double mutants and, simultaneously, synergism or even an additive effect with FLC and 5FC was no longer discernible. Since the majority of spontaneously occurring resistant yeast clones displayed residual sensitivity to either 5FC or FLC and those strains responded to combined drug treatment in a predictable manner, careful resistance profiling based on the findings reported here may help to address yeast infections by combined application of antimycotic compounds.
| INTRODUCTION |
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5FC is a prodrug, which to exert its action requires uptake and metabolism to either 5-fluorouridine triphosphate (5FUTP, formed from 5FUDP; see Fig. 1
) or 5-fluorodeoxyuridine monophosphate (5FdUMP), the former directly disturbing transcription and the latter – via inhibition of thymidylate synthetase and subsequent dTTP depletion – aborting DNA synthesis (Polak & Scholer, 1975
; Hartmann & Heidelberger, 1961
; Whelan, 1987
; Wadler et al., 1998
). Essential steps in intracellular 5FC metabolism are the conversion to 5-fluorouracil (5FU) by the cytosine deaminase Fcy1 and subsequent processing to 5-fluorouridine monophosphate by the uracil phosphoribosyltransferase Fur1 (Chevallier et al., 1975
; Vanden Bossche et al., 1994
, 1987
; Kern et al., 1990
; Kurtz et al., 1999
).
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FLC and several other azole antimycotics interfere with the biosynthesis of ergosterol, a fungal-specific sterol that is important for membrane integrity (Smith et al., 1996
, Bammert & Fostel, 2000
). The specific target of antimycotic azoles is the lanosterol 14
-demethylase, encoded by the ERG11 gene (Kalb et al., 1987
; Vanden Bossche, 1985
). By binding the iron atom of the haem moiety, activation of oxygen, necessary for demethylation of lanosterol, is prevented (Joseph-Horne & Hollomon, 1997
), eventually resulting in the accumulation of toxic 14
-methylergosta-8,24(28)-dien-3β,6
-diol (14
-methyl-3,6-diol), which impairs membrane function (Kelly et al., 1995
).
Mechanisms of azole resistance in S. cerevisiae and C. albicans include overproduction or alteration of Erg11p, or modification of downstream enzymes (Bard et al., 1993
; Vanden Bossche et al., 1992
; Hitchcock, 1991
). The loss of function of the sterol
5,6-desaturase encoded by ERG3 results in accumulation of episterol, which permits fungal growth in the presence of azole drugs (Arthington et al., 1991
; Watson et al., 1988
; Kelly et al., 1995
). However, disruption of the aforementioned ERG11 gene was shown to be lethal in S. cerevisiae, as accumulation of 14
-methyl-3,6-diols facilitates growth only under anaerobic conditions and in ergosterol-supplemented media (Watson et al., 1989
; Bard et al., 1993
). This growth arrest can be circumvented by the inactivation of ERG3, which results in the accumulation of methylfecosterol instead of 14
-methyl-3,6-diol. In contrast, C. albicans ERG11 null mutants are capable of survival in the absence of a suppressor mutation in ERG3, albeit with a severe growth defect (Sanglard et al., 2003
). Hence, C. albicans either produces different levels of the diol and/or is less sensitive to its lethal effects as compared to S. cerevisiae (Watson et al., 1989
; Bard et al., 1993
).
To determine the prerequisites underlying the synergistic or additive increase in antifungal action of 5FC/FLC combinations, we set up a S. cerevisiae model system consisting of an isogenic strain collection with combinations of defined deletions in genes important for 5FC and/or FLC toxicity. Sensitivity profiling revealed residual drug responses and additive action of the two drugs in the majority of strains despite the establishment of primary resistance. The genetic basis of such residual activity was investigated and identified as being essential for increased drug action in combined applications of 5FC and FLC.
| METHODS |
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Transformation and gene disruptions.
E. coli JM109 was transformed by the CaCl2 method as described by Sambrook et al. (1989)
. Transformants of S. cerevisiae were obtained according to Gietz & Schiestl (1995)
, and selected on YNB agar.
The ERG3 gene was disrupted using the KlLEU2 marker gene cloned in pUG73. ERG3 was amplified and blunt-end inserted into the HincII site of the pSK plasmid vector (see Table 2
for primers). Subsequently, the KlLEU2 gene from pUG73 was excised (HincII and PvuII) and inserted into the internal ERG3 HincII site. The disruption cassette erg3 : : LEU2 was introduced into S. cerevisiae BY4741, S. cerevisiae
fcy1 and S. cerevisiae
fcy2 strains (Table 1
). Mutants obtained from EUROSCARF (Frankfurt, Germany),
fcy1 and
fcy2, were verified using primer pairs Fcy1F/R and Fcy2F/R, respectively. Homologous recombination with the ERG3 disruption cassette was checked by PCR, in a Mini-Cycler (MJ Research Biozym) and Southern analysis.
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fur1 and
ura10, resulting in
ura5
fur1 and
ura5
ura10 double mutant strains. Disruption of URA5 was PCR verified, employing primer pairs URA5outR/HIS5up and URA5outF/HIS5down, respectively. For verification of URA10 and FUR1 knockouts, primer pairs LEU2down/URA10outF, LEU2up/URA10outR and URA3down/Fur1outF, URA3up/Fur1outR were applied.
In vitro drug susceptibility tests.
Stock solutions of 5FC and FLC obtained from MP Bio-medicals, Frankfurt, Germany, were established with a final concentration of 5 mg ml–1, and after sterile-filtration (cellulose acetate membrane, pore size 0.2 µm; Millipore), stored at –20 °C. Prior to use drugs were added to YPD agar at approximately 50 °C to establish appropriate concentrations. For testing resistance rapidly, cultures were diluted 10–1 to 104 and 8 µl of each dilution was spotted onto the agar plates. For proper quantification, 200 µl volumes of liquid YPD medium containing 5FC, FLC, and both in combination, were inoculated with 1x106 yeast cells and incubated at 30 °C in U-profile 96-well microtitre plates (Carl Roth) for 24 h; growth was monitored spectroscopically at 600 nm as previously described (Paluszynski et al., 2006
).
Where applicable, the minimal inhibitory concentration (MIC) for 5FC and FLC was read as the lowest drug concentration that gave 50 % or more growth inhibition, which is defined as MIC-2 as described by the National Committee for Clinical Laboratory Standards (NCCLS, 1998
). The fractional inhibitory concentration (FIC) was calculated to quantify drug interaction (Elfopouios & Moellering, 1991
), being defined as synergistic if the FIC was
0.5, additive if FIC was >0.5 and
1, indifferent if 1 <FIC
4, and antagonistic if FIC was >4.
The FIC index was determined as follows: FIC=[(MIC of drug A, in combination)/(MIC of drug A, tested alone)]+[(MIC of drug B, in combination)/(MIC of drug B, tested alone)].
Measurement of growth of
erg3 and
erg3
erg11 mutants.
To measure the growth of
erg3 and
erg3
erg11 mutant strains, in comparison to the wild-type, growth curves were established by inoculating 1 % of overnight pre-cultures in 50 ml YPD medium. Cultivation was performed in the presence and absence of FLC at 30 °C, with the final concentration of FLC being 1 mg ml–1. Growth was monitored spectroscopically at 600 nm until strains reached the stationary phase.
| RESULTS AND DISCUSSION |
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Resistance levels of respective mutants of the BY4741 background were initially monitored using a drop dilution plate assay employing various concentrations of 5FC and FLC. As to be expected,
fcy1,
fcy2 and
fur1 mutations clearly conferred 5FC resistance (Fig. 2a
), whereas FLC resistance was solely observed in the
erg3 strain (Fig. 2b
). There was no cross-resistance to FLC in
fcy1,
fcy2 or
fur1 strains and vice versa; as for the wild-type 5FC sensitivity was seen in the
erg3 mutant.
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fcy2 mutant (FIC=0.576) or synergism in the case of the
erg3 mutant (FIC=0.20), despite the fact that the latter two exhibit resistance to 5FC or FLC (Figs 3
fur1 mutant (FIC=0.63) (Fig. 3d
fcy2 and dose-independent in the
fur1 mutant (Fig. 3
erg3 strain, which is, however, not aggravated with increasing FLC concentrations (Fig. 4a
erg3 cells, a general growth-affecting defect in
erg3 became obvious; however with FLC, growth was additionally retarded (Fig. 4b
erg3.
|
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-methylfecosterol, the latter being formed from lanosterol by inhibition of the 14-
demethylase (Erg11) by FLC (Bard et al., 1993
erg3 mutants tolerate FLC, as no toxic diols are synthesized, but concomitantly exhibit an altered membrane sterol composition probably accounting for the observed slow growth of these mutants (see also Fig. 4
Although the main target of FLC, Erg11, is normally essential, it is dispensable when Erg3 is additionally knocked out, as this abrogates formation of toxic diols (Bard et al., 1993
; Watson et al., 1989
).
erg3
erg11 cells displayed full FLC resistance, but again, the strong FLC-independent growth defect became obvious (Fig. 4a, c
). Interestingly, growth of the double mutant (
erg3
erg11), irrespective of the presence or absence of FLC, is comparable to that of the
erg3 strain with FLC. In each of the latter, the ergosterol biosynthesis pathway yields 14
-methylfecosterol, evidently causing a more pronounced growth impairment than episterol but less than 14
-methyl-3,6-diol formed in wild-type cells when exposed to FLC (Fig. 4d
). Importantly, synergistic actions of FLC and 5FC, as seen in
erg3 cells, are cancelled by the additional
erg11 mutation, indicating the requirement of at least residual FLC-mediated growth retardation for synergistic or additive drug action.
As for the
erg3
erg11 mutant, the additive response was abolished when FCY1 was lacking, with both displaying an FIC of 1 and, at least consistent with residual sensitivity being crucial for additive action,
fcy1 mutants displayed no response to 5FC regardless of the concentration applied (Fig. 3b
). Thus, synergistic or additive antifungal action of 5FC/FLC treatment is seen in
erg3,
fcy2 and
fur1 strains, whereas such an effect is absent in
erg3
erg11 double and
fcy1 single mutants, which do not respond to either FLC or 5FC, respectively.
5FC response in fur1 mutants
We have recently shown that toxicity of 5FC in
fcy2 mutants is due to the presence of several other permeases capable of low-level 5FC transport in S. cerevisiae (Paluszynski et al., 2006
). Growth inhibition of
fur1 mutants by 5FC must, however, occur in a different manner, since the Fur1-catalysed conversion of 5FU to 5FUMP is crucial for downstream effects of 5FC (Fig. 1
). Unlike mammals, S. cerevisiae lacks alternative enzymes capable of 5FU metabolism, such as thymidine or uridine phosphorylase (Jund & Lacroute, 1970
). According to the Candida genome database (http://www.candidagenome.org/) and Cryptococcus neoformans genome project (http://www.tigr.org/tdb/e2k1/cna1/), there is also no evidence for the presence of thymidine or uridine phosphorylases in these genera. In mammals, 5FU can also be metabolized by orotate phosphoribosyltransferase, an enzyme involved in de novo pyrimidine biosynthesis (Peters et al., 1984
); the engagement of the respective yeast enzymes in 5FC antimycotic activity has, however, yet to be investigated. S. cerevisiae possesses two homologous orotate phosphoribosyltransferases, Ura5 and Ura10 (Fig. 5a
), which are only distantly related to the functional analogues of mammals (de Montigny et al., 1990
). Hence, the involvement of such yeast orotate phosphoribosyltransferases in 5FU metabolism was checked by disrupting URA5 and URA10 singly and in combination. Effects on 5FC tolerance were subsequently recorded by the microtitre plate assay (Fig. 5b
). Indeed, the
ura5 single mutant displayed moderate resistance at low 5FC concentrations (Fig. 5b
). However,
ura10 alone did not affect 5FC tolerance significantly, but slightly contributed to resistance in the
ura5 background (not shown). Most remarkably, however, full dose-independent 5FC resistance was established when URA5 was disrupted in the
fur1 strain (Fig. 5b
). Thus, both Ura5 and Ura10 are capable of 5FU metabolism and probably mediate residual 5FC toxicity in the absence of Fur1. As homologues of S. cerevisiae Ura5/10 have been identified in a variety of ascomycetous yeast species, including Candida albicans and C. glabrata, and also in the basidiomycetous yeast Cryptococcus neoformans (Fig. 5a
), it appears probable that a requirement for uracil phosphoribosyltransferase in 5FC prodrug activation and antifungal activity can generally be bypassed to some extent by orotate phosphoribosyltransferases. Among three loci known to be involved in 5FC uptake and activation (FCY1, FCY2 and FUR1) in S. cerevisiae, only one proved to be essential (FCY1). It has previously been shown that S. cerevisiae
fcy1 mutants entirely lack cytosine deaminase activity, and
fcy1
ura3 or
ura2 double mutants, which are additionally defective in de novo pyrimidine synthesis, are unable to grow with exogenously supplied cytosine (Jund & Lacroute, 1970
; Erbs et al., 1997
), clearly excluding an alternative enzyme for bypassing the Fcy1 deamination of cytosine or 5FC. In contrast, Fcy2 and Fur1 reactions can be catalysed by structurally or functionally related proteins, thereby explaining successful application of 5FC in instances where (partial) resistance was established by targeted gene disruption in the model system, or by spontaneous mutation in resistant clinical isolates.
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Effects of 5FC and FLC on spontaneously occurring resistant clones
To elucidate whether residual antimycotic response in spontaneous mutants is indeed detectable and functionally linked with susceptibility to combined 5FC/FLC application, naturally occurring drug-resistant mutants in S. cerevisiae were screened. Among 73 clones obtained in a screening for 5FC tolerance, 39 turned out to be stable. Almost all of the latter displayed additive effects when treated jointly with both drugs; only three of them eventually turned out to be fully resistant, and interestingly, for these isolates, the 5FC/FLC combination had the same effect as the singly applied 5FC (Table 3
). All strains obtained in a screening for FLC tolerance (n=36) still displayed residual drug sensitivity. Remarkably, combined application of both antimycotic compounds increased their biological activities in either case, supporting the notion that residual drug response is required and sufficient for additive antifungal activity of the 5FC/FLC combination (Table 3
). It is noteworthy that occurrence of full resistance to either drug was an exception rather than the rule in our experiments. In fact we have experienced it only for the three strains being fully resistant to 5FC. In all other instances susceptibility to combined drug treatment was prevalent.
|
Testing combined drug efficiency in defined mutants with primary resistance to 5FC and FLC
Double mutants carrying mutations conferring resistance to both agents were generated to check whether partial resistance to either 5FC or FLC still allows efficient combined drug action (Fig. 6
). Indeed, combination of the
erg3 mutation with either
fcy2 or
fur1 resulted in strains displaying robust resistance to both 5FC and FLC. However, as for the respective single mutants, residual response to both 5FC and FLC was observed in the
erg3
fcy2 (FIC=0.57) and the
erg3
fur1 strain, where a distinct FIC could not be determined (Fig. 6a, b
). Combined application of both drugs led to increased antifungal activity; thus even a primary resistance against two antifungal agents does not a priori exclude additive effects in combinational treatments. Combining full 5FC (
fcy1) with partial FLC (
erg3) resistance, however, completely abolished additivity, supporting the conclusion that at least a faint residual response to both of the drugs is required (Fig. 6a
).
|
| ACKNOWLEDGEMENTS |
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Edited by: J. Pla
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Received 29 April 2008;
revised 12 June 2008;
accepted 19 June 2008.
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