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Istituto di Microbiologia, Università Cattolica del Sacro Cuore, via Emilia Parmense 84, 29100 Piacenza, Italy
Centro Ricerche Biotecnologiche, Università Cattolica del Sacro Cuore, via Milano 24, 26100 Cremona, Italy
Correspondence
Pier Sandro Cocconcelli
pier.cocconcelli{at}unicatt.it
| ABSTRACT |
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| INTRODUCTION |
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4 mg l–1; intermediate isolates are those for which the MIC is 8–16 mg l–1 and resistant isolates are those for which the MIC is
32 mg l–1 (NCCLS, 2000
CNS are gaining increasing importance, as they cause a large number of clinically relevant infections in hospitalized patients. In particular, S. epidermidis has been identified as a cause of nosocomial infections, associated with the pathogenesis of foreign-body infection due to the ability of the bacteria to colonize the polymer surface by forming a biofilm. This is a two-step process involving different genes coding for adhesins and autolysins (Götz, 2002
; Heilmann et al., 2003
; Vandecasteele et al., 2003
; Vuong et al., 2003
; Yao et al., 2005
; O'Gara, 2007
). The most important factor influencing primary attachment in S. epidermidis is the autolysin AtlE, encoded by the atlE gene (Vuong et al., 2003
; Qin et al., 2007
). The second phase of biofilm formation requires polysaccharide intercellular adhesin (PIA), which is encoded by the ica gene locus (O'Gara, 2007
; Ziebuhr et al., 1999
). Both molecules are involved in the pathogenesis of intravascular catheter-associated infection in a rat model (Rupp et al., 2001
). In addition, a protein termed Aae has been identified in S. epidermidis that has both bacteriolytic and adhesive properties (Heilmann et al., 2003
).
Since the natural habitat of CNS is the skin and the mucous membrane of animals, these micro-organisms are often present in raw meat and milk and multiply during food fermentation processes. In particular, in meat fermentation CNS play a fundamental role contributing to reduction of nitrate and nitrite, proteolysis and lipolysis, as well as protection against oxidative product damage. Due to these properties, strains of Staphylococcus xylosus, S. carnosus subsp. carnosus, S. carnosus subsp. utilis, S. equorum, S. warneri and S. saprophyticus are components of starter cultures used in meat fermentation (BoverCid et al., 1999
, 2000
; Sondergaard & Stahnke, 2002
). Other species can also participate in community development in meat fermentation, and in fact S. epidermidis and S. sciuri, two CNS occasionally involved in human infections, have been isolated from fermented sausages (Vilar et al., 2000
).
The purpose of the present study was to examine the mechanisms of vancomycin resistance in S. epidermidis CNBL 7032, a biofilm-forming vancomycin-resistant strain isolated from a cured meat product.
| METHODS |
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Vancomycin-resistant CNS were cultured on brain heart infusion (BHI) agar (Oxoid) at 37 °C for 24 h. Biofilm formation experiments were performed on positively charged nylon membranes (Boehringer Mannheim) in BHI medium in the presence or absence of vancomycin (32 mg l–1) at 37 °C for 18 h. Cell enumeration was achieved on BHI agar plates after detachment by vortexing for 10 min. The data presented are the means of three different experiments. The isolation of strain CNBL 7032 is described in Results.
Identification of strain CNBL 7032.
For taxonomic identification, DNA extracted as previously described (Cocconcelli et al., 1995
) was used to amplify a region of 16S rRNA using the primers P1 (5'-GCGGCGTGCCTAATACATGC-3') and P6 (5'-CTACGGCTACCTTGTTACGA-3'). P1 was used to determine the partial 16S rRNA gene sequence. Taxonomic identification and similarity rank (Sab) calculations were performed, comparing the 16S rRNA sequences of isolates with the sequences present in the small subunit database (SSU-Prok) of the Ribosomal Database Project (Maidak et al., 2001
).
DNA sequencing.
For sequence analysis, the 16S rRNA and atlE amplicons were purified using the microCLEAN system (Labogen). Nucleotide sequencing was carried out using an Applied Biosystems 373A DNA sequencer using the ABI PRISM BigDye Terminator Cycle Sequencing and Dye Primer Cycle Sequencing kits (Applied Biosystems).
Susceptibility testing.
Resistance to vancomycin was assessed using the agar dilution procedure (NCCLS, 2000
) on Müller–Hinton agar (Oxoid). Heteroresistance was determined as follows: three colonies from strain CNBL 7032 grown on BHI agar containing 8 mg vancomycin l–1 (Sigma) were tested for stability of resistance. These colonies were subcultured nine times on antibiotic-free BHI agar. Then vancomycin resistance was tested by plating 100 µl of 10-fold dilutions of cell suspension on Müller–Hinton agar containing 0, 4, 8, 16, 24 or 32 mg vancomycin l –1. Plates were incubated at 37 °C for 48 h (Van Der Zwet et al., 2002
).
Detection of vancomycin-resistance determinants.
The presence of the vancomycin-resistance vanA and vanB genotypes was investigated using PCR as described by Clark et al. (1993)
. Primers P1 and P6, which amplify a region of 16S rRNA, were used as an internal control in the PCR. PCR was performed in a volume of 50 µl containing 10 mM Tris (pH 8.3), 50 mM KCl, 1.5 mM MgCl2, 0.2 mM dNTPs, 0.5 µM of each primer, 2.5 U Taq polymerase (Promega) and 300 ng DNA (Cocconcelli et al., 1995
), using a GeneAmp PCR system 9700 (Applied Biosystems). Cycling conditions were as follows: 10 min at 95 °C, followed by 30 cycles of 30 s at 94 °C, 30 s at 58 °C, 30 s at 72 °C, and a final incubation for 10 min at 72 °C. Amplified products were analysed by gel electrophoresis.
Electron microscopy.
Samples for transmission electron microscopy (TEM) were prepared as follows. S. epidermidis cells, grown in BHI containing 0, 4, 8, 16, 24 or 32 mg vancomycin l–1, were harvested by low-speed centrifugation (3000 g, 5 min). The cells were washed twice in sodium cacodylate buffer (200 mM, pH 7.3), pre-fixed in 2.5 % (w/v) glutaraldehyde and fixed with 1 % (w/v) OsO4. The samples were embedded in Epon resin (Fluka Chemie) and thin sections were prepared using a Reichert–Jung Ultracut microtome. Sections were stained with 4 % (w/v) uranyl acetate and then with 0.4 % (w/v) lead citrate, and examined with a JEOL JEE 1200 EXII electron microscope at 100 kV. Cell wall thickness was measured using ImageJ 1.30 software, provided by Wayne Rasband (National Institutes of Health, Bethesda, MD, USA). The data were acquired analysing 80 cell images for each sample.
Samples for scanning electron microscopy (SEM) were prepared as follows. Strains were grown in BHI agar medium (Oxoid) in the absence or presence of vancomycin (4, 8, 16, 24 or 32 mg l –1). Colonies were dehydrated in ethanol/water mixtures, with increasing ethanol concentrations (65 %, 75 %, 85 %, 95 % and 100 %). After critical-point drying in a Baltec CPD030 dryer, specimens were mounted on SEM discs, coated with gold, and observed with a scanning electron microscope (XL30 ESEM, Philips).
Zymographic detection of autolysis.
Cells were grown in BHI containing 0, 4, 8, 16, 24 or 32 mg vancomycin l–1 at 37 °C for 18 h, centrifuged, washed with sterile water, and resuspended in a solution of 2 % SDS, 0.01 M EDTA, 0.01 M NaCl and 0.01 M Tris/HCl, pH 8.0. The cell suspension was incubated for 5 min at 100 °C and the cells were pelleted by centrifugation for 10 min. The supernatants were used as the crude surface protein preparations. Protein concentration was determined using the Bio-Rad Protein Assay kit, with BSA (Bio-Rad) as the standard. Autolysins in each sample were resolved by electrophoresis in a minigel apparatus (Bio-Rad), using SDS-PAGE gels (12 %) containing heat-killed Micrococcus luteus cells (Sigma) as a substrate for the lytic enzymes. Electrophoresis, denaturation and visualization of clear zones in the gel by methylene blue staining were performed as described by Berger-Bachi et al. (1992)
. Equivalence of loading between lanes was assessed by Coomassie blue staining of SDS-PAGE gels run in parallel (Hanaki et al., 1998
; Boyle-Vavra et al., 2001
). Densitometric analysis of zymograms was performed using ImageJ 1.3 software, provided by Wayne Rasband (National Institutes of Health, Bethesda, MD, USA).
PCR techniques for detection of adhesion and autolysin genes.
DNA was isolated from S. epidermidis CNBL 7032 as described previously (Cocconcelli et al., 1995
). Primers were synthesized by Primm (Italy). Primers icaAf (5'-GACCTCGAAGTCAATAGAGGT-3') and icaAr (5'-CCCAGTATAACGTTGGATACC-3') (Ziebuhr et al., 1999
) were used to amplify the ica gene encoding a polysaccharide intercellular adhesin (PIA) involved in the accumulation phase of biofilm formation. To detect the presence of the aap gene, coding for the Aap protein, involved in biofilm formation, primers aapf (5'-ATACAACTGGTGCAGATGGTTG-3') and aapr (5'-GTAGCCGTCCAAGTTTTACCAG-3') were used (Vandecasteele et al., 2003
). Primers atlEf (5'-CAACTGCTCAACCGAACA-3') and atlEr (5'-CATCGTTTTCAGCGCTATCA- 3') were used to amplify the atlE gene, encoding an autolysin AtlE involved in the initial attachment of cells to the polymer surface and in the second phase of biofilm formation (Vandecasteele et al., 2003
). To detect the aae gene, encoding a protein with bacteriolytic and adhesive properties, primers aaeF (5'-GAGGAGGATTTTAAAGTGC-3') and aaeR (5'-AACATGACCATAGTAACC-3') were used (Heilmann et al., 2003
). PCR conditions were as reported previously (Ziebuhr et al. 1999
; Heilmann et al., 2003
; Vandecasteele et al., 2003
).
Extraction of total RNA and RT-PCR.
Total RNA was extracted from stationary-phase (24 h) S. epidermidis cultures grown on BHI agar (Oxoid) containing various concentrations (0, 16 and 32 mg l –1) of vancomycin (Sigma), using the RNeasy Mini kit (Qiagen) with an additional step of treatment with RNase-free DNase (Qiagen). The concentration of RNA was determined by measuring the absorbance at 260 nm using an Ultrospec 2100 pro UV–visible spectrophotometer (Amersham Biosciences).
Reverse transcription reactions were performed on total RNA using the Reverse-iT One-Step RT-PCR kit (ABgene), following the supplier's recommendations, in a final volume of 25 µl containing 30 ng total RNA. Reaction mixtures were incubated at 47 °C for 30 min, followed by denaturation at 94 °C for 2 min. cDNA products were amplified as described above (Vandecasteele et al., 2003
). PCR products were analysed on 0.8 % agarose gels. To control for the residual presence of DNA, RT-PCR was also performed in the absence of reverse transcriptase. The data are reported as the mean value of five RT-PCR experiments.
Quantitative PCR (RTq-PCR).
Quantification was performed using a LightCycler apparatus and the FastStart DNA MasterPlus SYBR Green I kit (Roche) using 1 µl or 2 µl of cDNA in a final volume of 20 µl. RNA was prepared as described above, and reverse transcription was performed using 200 ng DNA-free RNA, random primer, and the Transcriptor First Strand cDNA Synthesis kit (Roche), following the supplier's recommendations.
Samples were heated at 95 °C for 10 min before cycling for 45 cycles of 95 °C for 10 s, 55 °C for 20 s, and 72 °C for 25 s. A melting curve plotted at the end of each run verified the specificity of the amplification product. The experiment was repeated three times using cDNA from each of two independent RNA preparations.
The absolute quantification compares the amplification of a target transcript in the sample against a standard curve prepared with known concentrations of the target. The standard curves were generated from tenfold serial dilutions of cDNA and quantified by RTq-PCR using the gyrA gene as described by Eleaume & Jabbouri (2004)
. To quantify the expression of the atlE gene, primers were designed with respect to the sequences in the GenBank nucleotide sequence database (accession number U71377) using the Primer 3 website (http://www-genome.wi.mit.edu) (Rozen & Skaletsky, 2000
) (AtlE_RT_F 5'-CCCAAGGTGCTACTTGCTTC-3'; AtlE_RT_R 5'-TGATAGCGCTGAAAACGATG-3').
Construction of a strain disrupted in the atlE gene.
A strain disrupted in the atlE gene (S. epidermidis CNBL 7032
atlE) was constructed by insertional inactivation of the autolysin gene using the non-replicative plasmid pJIR750 (Chen et al., 2005
). A 500 bp mutS fragment was amplified using the HindIII- and BamHI-modified primers atlEf (5'-AAGCTTCAACTGCTCAACCGAACA-3') and atlEr (5'-GGATCCCATCGTTTTCAGCGCTATCA-3') and cloned into the corresponding sites of pJIR750. The resulting plasmid was electroporated into S. epidermidis CNBL 7033 as previously described (Augustin & Gotz, 1990
), selecting for chloramphenicol-resistant colonies (15 mg l–1). The insertional inactivation of the atlE gene was verified by PCR and Southern hybridization.
| RESULTS |
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32 mg l–1) and vancomycin-intermediate (MIC between 8 and 16 mg l–1) staphylococci in fermented and cured meat products by plating samples onto Baird–Parker medium containing 8 mg vancomycin l–1. Vancomycin-intermediate CNS were detected in 16 out of 20 different pork meat products produced in Europe, in numbers varying from 2x101 to 5.2x105 c.f.u. g–1. Vancomycin-intermediate strains were differentiated from vancomycin-resistant strains by observing the replication of isolated colonies on Müller–Hinton medium (Oxoid) agar plates in the presence of 8, 16, 24 and 32 mg vancomycin l–1. Of 96 vancomycin-intermediate CNS, a single strain, CNBL 7032, was able to grow at 32 mg vancomycin l–1 and was used for further studies. The taxonomic identification of this strain was achieved by partial sequencing of the 5' region of 16 S rRNA. The in silico analysis revealed that strain CNBL 7032 belonged to the species Staphylococcus epidermidis.
S. epidermidis CNBL 7032 is a heteroresistant strain
S. epidermidis CNBL 7032 was examined for the presence of the vanA and vanB transferable enterococcal genotypes. PCR amplification using DNA extracted from CNBL 7032 and specific primer combinations did not yield any DNA fragments, confirming that the resistance to glycopeptide antibiotics in CNS is not due to the acquisition of enterococcal genetic determinants.
The agar dilution method, performed using the NCCLS procedures (NCCLS, 2000
), demonstrated that S. epidermidis CNBL 7032 was resistant to up to 32 mg vancomycin l–1. Since heteroresistance has been frequently reported among members of the genus Staphylococcus, population analysis experiments were performed to assess the presence of this phenomenon in S. epidermidis CNBL 7032. Cultures were grown in the absence or presence of vancomycin, and resistant subpopulations were quantified on agar plates containing different concentrations of vancomycin (0, 8 and 32 mg l–1). S. epidermidis CNBL 7032 fulfilled the definition of vancomycin heteroresistance, having subpopulations resistant to 8 and 32 mg vancomycin l–1 at a frequency of 10–4 and 10–7, respectively.
Vancomycin influences growth and biofilm formation of S. epidermidis CNBL 7032
The observation that S. epidermidis CNBL 7032 grown in the presence of vancomycin formed cell aggregates prompted us to examine the effect of the glycopeptide antibiotic on cell envelope properties and biofilm formation. SEM examination of cells grown in the presence of vancomycin revealed the presence of leg-like appendages linking cells (Fig. 1
). Moreover, SEM analysis revealed biofilm-like structures only when cells were grown in the presence of high concentrations of vancomycin (24 and 32 mg l–1; Fig. 1
E, F).
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Vancomycin resistance in S. epidermidis CNBL 7032 involves cell wall thickening
Preparations of S. epidermidis CNBL 7032 grown in the presence of different concentrations of vancomycin were subjected to TEM analysis and morphometric studies. The presence of vancomycin did not influence the cell dimensions: both cell size and diameter were similar in cells grown in the absence or presence of increasing quantities of vancomycin. However, as observed in S. aureus (Rice, 2006
; Cui et al., 2003
), analyses of cell walls (Fig. 2
) revealed an increased cell wall thickness in S. epidermidis CNBL 7032 cells grown in the presence of vancomycin: the mean cell wall thickness of S. epidermidis CNBL 7032 grown with 32 mg vancomycin l–1 was 54.18 nm,
42 % greater than the mean cell wall thickness of the cells grown in the absence of antibiotic (P<0.001) (Fig. 2
).
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atlE transcriptional activity is influenced by vancomycin
Since biofilm formation has been related to vancomycin resistance, we analysed the presence of genes coding for proteins involved in biofilm formation. PCR analysis showed that S. epidermidis CNBL 7032 does not harbour icaA, aap or aae, three genes involved in biofilm formation. However, PCR amplification and sequencing experiments confirmed that S. epidermidis strain CNBL 7032 contains the atlE gene, which codes for the 120 kDa autolysin AtlE, a protein involved in biofilm formation (Heilmann et al., 1997
; Vandecasteele et al., 2003
; Qin et al., 2007
; Nunes et al., 2006). To evaluate if the expression of this gene was influenced by the glycopeptide antibiotic and by biofilm formation, total RNA was extracted from stationary-phase cells grown with increasing concentrations of vancomycin and used for RT-PCR experiments. Vancomycin positively influenced the transcriptional activity of atlE, since the expression of the gene was proportional to the concentration of antibiotic in the growth medium (Fig. 4
).
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At a vancomycin concentration of 16 mg l–1, a slight increase (13 %) in atlE expression was observed, as compared with control cells grown in the absence of vancomycin. A sharp, fourfold increase was observed at 32 mg l–1 or when cells were grown in biofilm on a nylon surface.
Construction and characterization of the CNBL 7032
atlE mutant
The atlE gene was disrupted by insertion to create strain CNBL 7032
atlE. The correct insertion was confirmed by PCR and Southern hybridization (data not shown). RT-PCR experiments demonstrated that CNBL7032
atlE did not express the atlE gene. Although the growth rates of the parent strain and CNBL7032
atlE in BHI medium were substantially similar, as observed by Qin et al. (2007)
, the ability to form biofilm on nylon membrane was significantly depressed by atlE inactivation.
The agar dilution method showed that S. epidermidis CNBL7032
atlE was susceptible to vancomycin (MIC 4 mg l–1). Moreover the heteroresistance phenomenon observed in the parent strain was not detected in the atlE mutant.
| DISCUSSION |
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Furthermore, our data suggest that other mechanisms are involved in vancomycin resistance in S. epidermidis CNBL 7032, since this strain can grow at higher cell density in the presence of 32 mg vancomycin l–1 on solid media or in a liquid medium in the presence of a solid support that allows the formation of a biofilm. Genes involved in biofilm formation have been studied in S. epidermidis, since this physiological property has been associated with virulence (Heilmann et al., 1997
; Von Eiff et al., 2002
; Vandecasteele et al., 2003
; Vuong et al., 2003
) and antibiotic resistance (Mønzøn et al., 2002
). In particular, the ica operon, aap, aae and altE genes, coding respectively for PIA adhesin, Aap protein, Aae surface-associated protein and AtlE cell wall autolysin, have been related to biofilm formation. Biofilm-like structures were observed by electron microscopy when S. epidermidis CNBL 7032 was grown in the presence of vancomycin (Fig. 1
), as was observed in strains of the same species that formed biofilm on biomedical materials and correlated with the ica gene (Kodjikian et al., 2003a
, b
).
We also investigated the interaction between genes involved in biofilm formation and glycopeptide antibiotic resistance. Mønzøn et al. (2002)
reported that vancomycin has a reduced activity toward S. epidermidis growing in biofilms. In addition, Jefferson et al. (2004)
demonstrated that a glycopeptide-insensitivity-associated gene implicated in biofilm formation in staphylococci is involved in the regulation of icaR. Our PCR analyses demonstrated the absence of the ica operon, coding for the PIA adhesin, and the autolysin aae gene, two genes which have been previously reported to be involved in the second phase of biofilm formation (Rupp et al., 2001
; Heilmann et al., 2003
). Conversely, S. epidermidis CNBL 7032 contained the gene atlE coding for the AtlE autolysin, which has an adhesive function that is involved in the first phase of biofilm formation, as recently described by Qin et al. (2007)
.
Our present data suggest that the vancomycin resistance of S. epidermidis CNBL 7032 is influenced by biofilm formation, cell wall thickness and atlE gene expression. In the presence of vancomycin, S. epidermidis CNBL 7032 showed a significant increase (about 42 %) in cell wall thickness, suggesting that cells grown in the presence of high concentrations of vancomycin increase their production of AtlE. Quantitative RT-PCR experiments demonstrated that expression of the atlE gene increased proportionally as the concentration of antibiotic in the medium increased. The insertional inactivation of the atlE gene confirmed the role of AtlE in S. epidermidis CNBL 7032 in vancomycin resistance.
Since Sieradzki & Tomasz (2003)
have demonstrated that vancomycin resistance is related to modification of autolysis activity in S. aureus, we assessed the autolytic activity of vancomycin-resistant S. epidermidis CNBL 7032 subpopulations. Zymogram analysis of autolytic enzymes showed a similar proportion between total cell wall proteins and autolysins in cells grown at different vancomycin concentrations.
Food has been demonstrated to be a potential reservoir of vancomycin-resistant bacteria, including members of the genus Enterococcus. Thus, the isolation of vancomycin-insensitive staphylococci from cured meat products raises questions about the safety of antibiotic-resistant CNS strains in food chains and should stimulate further studies to assess the risks associated with consumption of food containing relevant amounts of antibiotic-resistant bacteria.
| ACKNOWLEDGEMENTS |
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Edited by: H. Ingmer
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Received 4 June 2008;
accepted 11 July 2008.
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