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Department of Microbiology, Bose Institute, P-1/12 C.I.T. Scheme VII M, Kolkata 700 054, India
Correspondence
Tapan K. Dutta
tapan{at}bic.boseinst.ernet.in
| ABSTRACT |
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| INTRODUCTION |
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There are reports of isolation of several micro-organisms from the environment with the ability to degrade PAEs individually (Karegoudar & Pujar, 1984
; Kurane, 1986
; Nomura et al., 1992
). Degradation of BBP, an alkyl aryl phthalate, necessitates diverse metabolic machinery involving sets of distinct degradative genes. Thus, most of the literature on the degradation of BBP describes more than one bacterial species or undefined consortia, and very little is known about the role of individual organisms in BBP assimilation (Yuan et al., 2002
; Chang et al., 2004
; Li et al., 2005
; Xu et al., 2006
). On the other hand, several PAEs are often simultaneously present in the environment (Yuan et al., 2002
), and there is a surprising lack of information on the degradation of mixtures of PAEs (Yuan et al., 2002
; Chang et al., 2004
).
Our interest in the biodegradation of PAEs led us to isolate and characterize bacterial species that can degrade BBP. Among the species isolated, we have already reported that Gordonia sp. strain MTCC 4818 and Arthrobacter sp. WY could utilize BBP individually as sole source of carbon and energy (Chatterjee & Dutta, 2003
, 2008
). However, the growth of Gordonia sp. strain MTCC 4818 on BBP was supported solely by the utilization of BBP-hydrolysed alcohols, resulting in the accumulation of monobutyl phthalate (MBuP) and monobenzyl phthalate (MBzP) in the culture medium. Moreover, a small amount of phthalic acid generated due to inadequate hydrolysis of the phthalic acid monoesters was accumulated as a dead-end product in the degradation of BBP by the Gordonia strain (Chatterjee & Dutta, 2003
). On the other hand, degradation of BBP by the Arthrobacter sp. strain WY was quite slow and the growth of the organism was observed to be based on the utilization of BBP-hydrolysed phthalic acid only, leaving the BBP-hydrolysed alcohols unutilized in the degradation process (Chatterjee & Dutta, 2008
). Thus, both the Gordonia and the Arthrobacter strain were found to be metabolically restricted in their ability to assimilate the alkyl aryl phthalate completely (Chatterjee & Dutta, 2003
, 2008
). In the present study, a co-culture of Gordonia sp. strain MTCC 4818 and Arthrobacter sp. strain WY was used for complete utilization of BBP, involving esterases and other enzymes in metabolic cooperation. Further, the co-culture was examined for its potential in the degradation of a mixture of phthalate esters widely present in the environment.
| METHODS |
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Organism and culture conditions.
The organisms, Gordonia sp. strain MTCC 4818 and Arthrobacter sp. strain WY, used in the present study were isolated from contaminated soil by enrichment culture technique with BBP as the sole source of carbon and energy (Chatterjee & Dutta, 2003
, 2008
). Cells of the individual organisms were grown in liquid minimal salt medium (pH 7.0) containing (l–1) K2HPO4, 3.34 g; NaH2PO4, 0.87 g; NH4Cl, 2.0 g; nitrilotriacetic acid, 123 mg; MgSO4.7H2O, 200 mg; FeSO4.7H2O, 12 mg; MnSO4.H2O, 3 mg; ZnSO4.H2O, 3 mg and CoCl2.6H2O, 1 mg, supplemented with BBP, 1 g l–1 (aqueous solubility, 2.7 mg l–1). Solid media contained 2 % agar (HiMedia).
The inoculum for the co-culture was grown in a 250 ml Erlenmeyer flask containing 49 ml liquid mineral salt medium supplemented with 1 g BBP l–1 as sole carbon source and inoculated with 0.5 ml (OD660 1.0) each of freshly grown culture of Gordonia sp. strain MTCC 4818 and Arthrobacter sp. strain WY. Experimental co-cultures were grown in 250 ml Erlenmeyer flasks at 28 °C on a rotary shaker (180 r.p.m.) containing 49.5 ml liquid mineral salt medium supplemented with 1 g BBP l–1 as the sole carbon source and inoculated with 0.5 ml (OD660 1.0) of a freshly grown inoculum co-culture of Gordonia sp. strain MTCC 4818 and Arthrobacter sp. strain WY on BBP (1 g l–1). At different time intervals, the contents of triplicate flasks were harvested to measure the growth of the co-culture (OD660) and the cell density of the individual isolates in the co-culture by plate count, and also to analyse the detectable metabolites and the residual BBP present.
For resting cell transformations, cells grown in liquid mineral salt medium were harvested in the late-exponential phase by centrifugation at 8000 g for 10 min, washed twice, each time with an equal volume of potassium phosphate buffer (50 mM, pH 7.0), and finally resuspended in the same buffer to an OD660 of 1.0. BBP and possible pathway intermediates (1 g l–1) were added individually to washed cell suspensions, and incubated at 28 °C for different time periods up to a maximum of 48 h. Unless stated otherwise, each experiment was performed in triplicate.
Degradation of mixture of phthalates by the co-culture.
A stock of a PAE mixture (DMP, DEP, DBP, DIBP, DEHP, D-n-OP, DPP, DCHP and BBP) was prepared by the addition of 1 g equivalent of each PAE in an amber-coloured bottle, mixing thoroughly until the solid substrates dissolved completely. The co-culture was grown in 250 ml Erlenmeyer flasks containing 49.5 ml of liquid mineral salt medium supplemented with 1 g l–1 of PAE mixture and inoculated with 0.5 ml (OD660 1.0) of a freshly grown co-culture of Gordonia sp. strain MTCC 4818 and Arthrobacter sp. strain WY on the PAE mixture. The co-culture was incubated at 28 °C on a rotary shaker (180 r.p.m.) for 7 days. At different time intervals, the contents of triplicate flasks were harvested to measure the growth of the co-culture (OD660) and the cell density of the individual isolates in the co-culture by plate count and also to analyse the residual PAE components present.
Preparation of cell-free extracts.
Cells grown in mineral salt medium in presence of BBP or glucose (1 g l–1) were harvested at the mid-exponential phase by centrifugation at 8000 g for 10 min at 4 °C. The pellet was washed twice with 10 vols 50 mM Tris/HCl buffer pH 8.0 and resuspended in an equal volume of either 50 mM Tris/HCl buffer (pH 8.0) or 50 mM potassium phosphate buffer (pH 7.0) as desired. The cell suspensions were subjected to seven ultrasonic pulses generated with a sonicator (Labsonic-L, Braun Biotech International) for a total of 2 min at 4 °C. The resulting cell homogenates were centrifuged at 20 000 g for 20 min at 4 °C. The supernatants were used as sources of enzymes.
Non-denaturing gel and activity staining for esterase.
BBP-grown cell-free extracts of Gordonia sp. strain MTCC 4818 and Arthrobacter sp. strain WY were applied to non-denaturing 10 % polyacrylamide gels prepared without SDS (Sambrook et al., 1989
). Esterase staining was carried out by incubating the gel for 20 min at 28 °C in substrate buffer mixture. The mixture contained 0.5 % (w/v) Fast Blue BB salt (Hi-Media) and 5.38 mM
-naphthyl acetate (SRL, India) in 50 mM Tris/HCl buffer, pH 7.0 (Niazi et al., 2001
). Essentially, the esterase(s) present in the cell-free extract hydrolyse(s)
-naphthyl acetate to furnish
-naphthol, which further reacts with the Fast Blue BB salt to form a complex giving brownish colour bands to the sites of activity.
Isolation of esterases from native gel.
After preparative gel electrophoresis, a strip of the gel was cut and stained for its esterase activity. The non-stained gel strips corresponding to esterase bands were cut, suspended in 3 vols 50 mM Tris/HCl buffer (pH 7.0), and homogenized in a glass tissue homogenizer. The supernatant was collected following centrifugation at 8000 g for 15 min at 4 °C, lyophilized and stored at –20 °C for further studies.
Enzyme assays.
Esterase activity towards p-nitrophenyl acetate (p-NPA) was measured at 25 °C from the increase in A400 (
=13.6 mM–1 cm–1) (Pocker & Stone, 1967
). The reaction mixture contained an appropriate amount of enzyme in 50 mM potassium phosphate buffer (pH 7.0) and 100 µl p-NPA (25 mM in the same buffer) in a total volume of 1 ml. The hydrolytic activity of the cell-free extracts and the eluted proteins from gels towards phthalate diesters and monoesters was assayed at 28 °C for 30 min. The reaction mixture contained 60 µM substrate in 50 mM potassium phosphate buffer (pH 7.0) with an appropriate amount of enzyme in a final volume of 1 ml. The reaction was stopped by adding 50 µl HCl (2 M) and the solution was extracted three times, each time with an equal volume of ethyl acetate. The extract was evaporated and the residue was dissolved in 40 % methanol and an aliquot (25 µl) was subjected to HPLC to measure the amount of phthalate monoesters, phthalic acid and residual phthalate diester present. Quantitative estimation of the individual components was made from a standard curve of the respective component created by HPLC under identical conditions. The activity of catechol-1,2-dioxygenase was assayed spectrophotometrically by monitoring the increase in A260 due to the formation of cis,cis-muconic acid (Ngai et al., 1990
). Further metabolism of cis,cis-muconate by the crude extract was inhibited by the addition of EDTA disodium salt (1 mM final concentration) to the reaction mixture. Transformation of cis,cis-muconate by the cell-free extract was also measured spectrophotometrically by monitoring the decrease in A260 by cis,cis-muconate lactonizing enzyme. A molar absorption coefficient of 16 800 M–1 cm–1 for cis,cis-muconate was used to calculate the enzyme activities (Dorn & Knackmuss, 1978
). The activity of protocatechuate ortho-cleavage dioxygenase was assayed spectrophotometrically by monitoring the decrease in absorption maxima at 250 and 290 nm due to the formation of β-carboxy-cis,cis-muconate (Iwagami et al., 2000
; Paul et al., 2004
). One unit of enzyme activity was defined as the amount which degraded 1 µmol substrate min–1 under the assay conditions, and the specific activity was defined as units of enzyme activity (mg protein)–1. Protein was measured by the Lowry method with BSA as the standard.
Isolation of metabolites.
The bacterial cultures or the incubation mixtures of resting cells were centrifuged at 8000 g for 10 min and the supernatants were acidified to pH 1.5–2.0 with 2 M HCl. These were extracted three times, each time with an equal volume of ethyl acetate. Following incubation and hydrolysis of BBP, MBuP and MBzP by the gel-eluted esterases, the reaction mixtures were also acidified and extracted similarly. The extracts were dried over anhydrous sodium sulfate and evaporated under reduced pressure in a rotary evaporator (Hahn Shin Science Co.). In the case of the biodegraded samples of the mixture of phthalates, the extracts were spiked individually with 0.2 mg equivalent of phenanthrene (as external standard) dissolved in ethyl acetate and evaporated under reduced pressure.
Analyses.
Unconverted BBP and its metabolites obtained from spent culture and resting cell incubation mixture as well as the biotransformed products of various phthalate esters obtained from incubation with the cell-free extracts and the gel-eluted esterases of Gordonia sp. strain MTCC 4818 and Arthrobacter sp. strain WY were resolved by TLC on silica gel GF254 (Merck) plates using benzene/acetic acid (97 : 3, v/v) as the solvent system and detected under UV light at 254 nm. The identities of resolved products were determined occasionally by comparing with reference compounds developed identically.
Further, the unconverted BBP and its metabolites were resolved by HPLC using an analytical Nova-pak C18 reverse-phase column (3.9x150 mm, particle size 4 µm, pore size 60 Å, end-capped) attached to a Waters 515 solvent delivery system. The biodegraded products were eluted under isocratic mode with methanol/potassium phosphate buffer, 50 mM, pH 5.2 (40 : 60, v/v) as the solvent system at a flow rate of 1 ml min–1 and detected by a Waters 486 tunable absorbance detector at 254 nm. Metabolites were identified by comparison of their retention times with those of the authentic compounds or by co-elution under the same set of conditions. Yield of the metabolites was calculated using the Millennium Session Manager software package (version 2.15.01).
GC-MS analysis of the degradation products of BBP and phthalate mixtures was performed using a Varian 3800 GC apparatus equipped with a 30 mx0.25 mm (0.25 µm film thickness) HP-5MS capillary column and attached to a Saturn-2000 mass spectrometer (Varian). The temperature programme was held at 70 °C for 1.5 min, increased to 200 °C at an increment of 10 °C min–1, further increased to 280 °C at an increment of 5 °C min–1, and then held for 10 min at 280 °C. The injection volume was 1 µl, and the carrier gas was helium at a flow rate of 1.5 ml min–1. The mass spectrometer was operated at an electron ionization energy of 70 eV. Instrumental library searches, comparison with authentic compounds and mass fragmentation patterns were used to identify the metabolites. Biodegradation of the mixture of phthalates was monitored by analysis of the individual residual phthalate esters using phenanthrene as an external standard, where all samples were dissolved in an equal volume of ethyl acetate prior to GC-MS analysis. A parallel non-biodegraded control of phthalate mixture was extracted and processed as above. Quantitative estimation by GC-MS analysis of the individual phthalates in the biodegraded samples of phthalate mixture was made relative to the peak area of the non-biodegraded control after normalization of the peak areas of each analysis with the external standard.
Spectral determinations.
Enzyme-catalysed transformation of various substrates was monitored by recording changes in UV–visible spectra of the compounds using a Cary 100 Bio UV–visible spectrophotometer (Varian). Reactions were scanned in the range 220–400 nm for 0–30 min. Data were analysed by the Varian Cary Win UV Scan application software.
| RESULTS AND DISCUSSION |
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The co-culture was found to utilize BBP completely as sole source of carbon and energy. Apart from BBP, the two strains could utilize a number of intermediate metabolites of BBP degradation (Table 1
). The BBP metabolic profiles were evaluated by TLC, HPLC and GC-MS analyses of ethyl acetate extracts of resting cell incubations with BBP of BBP-grown co-cultures. TLC analysis revealed the presence of various polar metabolites in the reaction mixture, which were tentatively identified as MBuP and/or MBzP (RF 0.4), benzoic acid (RF 0.56), benzyl alcohol (RF 0.46) and phthalic acid (RF 0.03) based on comparison with the RF values of the respective standard compounds. HPLC and GC-MS analyses of the organic extracts of the resting-cell-mediated BBP degradation products produced by the co-culture showed product profiles similar to the results of TLC analysis and their identities were confirmed by comparing the retention times, coelution profiles and mass fragmentation patterns of the metabolites with those of the authentic compounds analysed under identical conditions (data not shown). In addition, both HPLC and GC-MS analyses could resolve the spot (RF 0.4) as observed in silica gel G plates into two components that were identified as MBuP and MBzP by both HPLC and GC-MS analyses. Thus the metabolites so characterized upon degradation of BBP by the co-culture support the BBP degradation profiles of the individual members (Chatterjee & Dutta, 2003
, 2008
) of the consortium.
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Spectrophotometric determination of enzyme activity in the metabolism of protocatechuate and catechol
Utilization of phthalic acid by Arthrobacter sp. strain WY and its metabolism via protocatechuic acid followed by the ortho-cleavage pathway, ultimately leading to the TCA cycle, was reported earlier (Chatterjee & Dutta, 2008
). Gordonia sp. strain MTCC 4818 was reported to be unable to metabolize phthalic acid or utilize it as a growth substrate (Chatterjee & Dutta, 2003
), but could utilize protocatechuic acid for growth (Table 1
). The strain could metabolize protocatechuic acid in vitro by protocatechuate 3,4-dioxygenase as determined by spectral changes [specific activity 104 nmol min–1 (mg protein)–1], similar to Arthrobacter sp. strain WY (Chatterjee & Dutta, 2008
). On the other hand, strain WY could not utilize catechol (Table 1
) as sole carbon source but could transform catechol in vitro by catechol 1,2-dioxygenase [specific activity 142 nmol min–1 (mg protein)–1] followed by cis,cis-muconate lactonizing enzyme [specific activity 3.4 nmol min–1 (mg protein)–1], similar to Gordonia sp. strain MTCC 4818 (Chatterjee & Dutta, 2003
). Metabolism of catechol and cis,cis-muconic acid by strain WY may be attributed to the broad substrate specificities of the enzymes involved in protocatechuate metabolism. Very similar specific activity profiles of protocatechuate 3,4-dioxygenase, catechol 1,2-dioxygenase and cis,cis-muconate lactonizing enzyme activities were observed by the cell-free extract of BBP-grown co-culture. Thus, combined effects appear to be involved in the metabolism of the intermediates protocatechuic acid and catechol in the degradation of BBP by the co-culture.
Analysis of esterases
In the bacterial degradation of phthalate diesters, esterases are the most important class of enzymes, accounting for the hydrolysis of the ester bond(s) to furnish monoester(s), phthalic acid and the hydrolysed alcohols for further utilization. To understand the involvement of esterase(s) in the degradation of BBP by the co-culture, presence of hydrolytic enzymes in Gordonia sp. strain MTCC 4818 and Arthrobacter sp. strain WY was analysed individually by activity staining (Fig. 3
). Two distinct activity bands (E1 and E2) were observed in the cell-free extract of BBP-grown cells of the Gordonia strain analysed on non-denaturing gel stained for esterase (Fig. 3
, lane 2). A single band of similar mobility to that of E2 with much lower intensity was observed in the extract of glucose-grown cells of the Gordonia strain, indicating the inducible nature of both the esterases. On the other hand, three distinct activity bands (E3, E4 and E5) were observed in the extract of BBP-grown cells of Arthrobacter sp. strain WY (Fig. 3
, lane 3), which were absent in the extract of glucose-grown cells of the strain. However, a distinct activity band (E6) of faster mobility was observed in the extract of glucose-grown cells of strain WY, which was absent in the extract of BBP-grown cells of this strain, indicating substrate-specific inducible esterases. It may be mentioned here that the activity bands (E1, E2, E3, E4 and E5) were observed in the cell-free extract of BBP-grown co-culture, indicating the expression of all five essential esterases under co-culture conditions.
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The biodegradative potential of the co-culture was validated by using a mixture of nine phthalate esters as carbon source in mineral salt medium incubated at 28 °C. The growth of the consortium and the fate of the individual phthalate diesters with time is shown in Fig. 5(a)
. Fig. 5(b)
shows the growth of individual species in the co-culture during the degradation of the phthalate mixture; the growth pattern is similar to that seen when BBP alone was used as sole carbon source (Fig. 2b
). Utilization of the mixture of phthalate esters (total initial concentration 1 g l–1) as carbon source was observed from the growth of the co-culture, where the stationary phase was reached within 5 days of incubation in mineral salt medium. In the degradation of the mixture of phthalates, BBP was rapidly degraded, followed by the low-molecular-mass phthalates, DMP, DEP and DBP, which were totally degraded within 120 h. It took 144 h for complete degradation of DPP and DIBP. It has been observed that the co-culture-mediated degradation of the high-molecular-mass phthalates, DEHP, DCHP, D-n-OP, and the branched-chain phthalate DIBP took relatively longer (Hu & Wan, 2006
). Thus, the temporal separation of consumption of different phthalate esters is possibly the consequence of substrate specificity and specific activity of expressed esterase(s) in the co-culture towards various phthalate esters grown on the mixture of phthalates. Apart from that, the temporal separation of consumption of various phthalate esters may be related to their degree of hydrophobicity and permeability factors. The above results support an apparent correlation between increasing length of the side-chain and decreasing biodegradability of phthalates (O'Grady et al., 1985
). Recently, degradation of phthalates was monitored individually for Corynebacterium sp. and Sphingomonas sp. and also as a co-culture of the two and it was observed that the degradation rates were enhanced when the phthalates were present as a mixture as well as under co-culture conditions (Chang et al., 2004
). In the present study, a mixture of nine phthalate esters of environmental concern was found to be completely degraded within 7 days by the co-culture. However, not only were the individual strains unable to utilize all the nine phthalate esters individually, but it also took much longer for the co-culture to completely degrade most of the individual phthalate esters (data not shown). Thus, for the enhanced degradation of a phthalate mixture under co-culture condition, it seems that there are cooperative effects allowing the micro-organisms to produce essential enzymes that are not produced by either of the strains alone or in the presence of a single substrate.
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| ACKNOWLEDGEMENTS |
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Edited by: D. J. Arp
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Received 17 July 2008;
revised 11 August 2008;
accepted 11 August 2008.
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