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1 Instituto de Química, UNESP, Departamento de Bioquímica e Tecnologia Química, 14800-900 Araraquara, SP, Brazil
2 Universidade Federal de São Paulo, UNIFESP, Departamento de Ciências Biológicas, 09972-270 Diadema, SP, Brazil
3 Universidade Federal de São Carlos, UFSCar, Departamento de Genética e Evolução, 13565-905 São Carlos, SP, Brazil
Correspondence
Maria Célia Bertolini
mcbertol{at}iq.unesp.br
| ABSTRACT |
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| INTRODUCTION |
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The copper resistance mechanisms in Escherichia coli are the best understood, and two chromosomal systems have been identified, both catalysing the removal of excess copper from the cell. One is the two-component signal transduction system designated cus (Cu-sensing), consisting of the cusCFBA operon, whose transcription is regulated by the cusRS genes (Munson et al., 2000
). The gene products work on copper efflux (Franke et al., 2003
; Rensing & Grass, 2003
). The other system, termed cue (Cu efflux), consists of the copper-responsive protein, CueR, that up-regulates the expression of two genes, copA and cueO (Outten et al., 2000
). CopA is a copper-translocating P-type ATPase (Rensing et al., 2000
) and CueO is a multicopper oxidase located in the periplasmic space (Grass & Rensing, 2001
). While the CueR-regulated system is important for copper tolerance under aerobic conditions, the cusRS system is required for copper tolerance under anaerobic conditions (Outten et al., 2001
), indicating that both systems are necessary for full copper tolerance. In addition to the chromosomal systems for copper homeostasis, plasmid determinants have also been described in E. coli. One such example is the pco (plasmid-borne copper resistance) system, consisting of seven genes (pcoABCDRSE) (Brown et al., 1995
) and regulated by the products of the genes pcoR and pcoS, proteins belonging to the family of the two-component sensor/responder phosphokinase regulatory system.
Copper resistance has become an important object of study in phytopathogenic bacteria as copper compounds have been widely used in agriculture to control plant diseases. As a consequence, plant-pathogenic bacteria have developed copper-resistance mechanisms, and Pseudomonas syringae pv. tomato was the first phytopathogen in which the mechanism was characterized at a molecular level (Cooksey, 1987
). In this organism the genes are arranged in a single operon, copABCDRS (Cooksey, 1987
), similar to the pco determinant from E. coli. PcoA and CopA both belong to the multicopper oxidase protein family; however, they must have different functions in the resistance mechanism since the pco system results in reduced cellular accumulation of copper and the cop system in increased uptake and sequestration (Brown et al., 1995
). Copper-resistance determinants have also been described in the bacteria Xanthomonas campestris pv. juglandis (Xcj) (Lee et al., 1994
) and in Xanthomonas axonopodis (formerly campestris) pv. vesicatoria (Xav) (Basim et al., 2005
; Cooksey et al., 1990
). Although most of them are in some way related to each other and to the E. coli pco genes, there appear to be some functional and regulatory differences among them (Rensing & Grass, 2003
). One such difference is the presence of the copL gene upstream from copA gene in a plasmid system described in Xav strain 7882, which is necessary for full copper resistance (Voloudakis et al., 2005
). However, the same gene is not found in the chromosomal region carrying the copper-resistance genes in a different strain (strain XvP26) of the same phytopathogen (Basim et al., 2005
). Thus, copper-resistance genes are organized into a regulatory network, which senses and responds differently to copper concentration, depending on the organism.
The comparative investigation of copper resistance genes has been facilitated as genomes from numerous bacterial phytopathogens have been completed. The genome of the bacterium X. axonopodis pv. citri (Xac), a pathogen that causes citrus canker, is now available (da Silva et al., 2002
) and investigation of copper resistance genes are of great interest, since copper compounds are widely sprayed in citrus crops to control plant bacterial diseases. In this work we have investigated the involvement of copAB in the mechanism of Xac copper resistance. Our results show that they are organized in an operon whose transcription is induced by and is specific to copper. Furthermore, the requirement of the gene products for copper resistance was demonstrated by in vitro and in planta studies. These results are important for investigation of the regulatory mechanisms involved in copper resistance in Xanthomonas as they seem to be different from the well-studied mechanisms in Pseudomonas.
| METHODS |
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Cloning of copA and copB coding region.
The copA and copB full coding sequences were PCR-amplified from genomic DNA. The primers CopA-F (5'-CGGAATTCATGTCTTTCGATCCCCCGTT-3') and CopA-R (5'-CGGAATTCTCATGCTTCCACCCG-3') were used for copA amplification, and primers CopB-F (5'-CGGAATTCATGAGCCGCTTTCGCATGCA-3') and CopB-R (5'-CGGAATTCTCAAAACCAAACGCG-3') for copB amplification. Primers were designed based on the gene sequences available at the Xac genome database (http://genoma4.iq.usp.br). The underlined sequences indicate EcoRI restriction sites. The amplified DNA fragments were cloned into pMOS vector (Amersham Biosciences) and the nucleotide sequences were confirmed by DNA sequencing.
Gene and protein expression analysis.
Cells of Xac were grown in 100 (for RNA experiments) or 600 ml (for protein experiments) nutrient agar medium for 12 h in the absence of copper. At this time one sample (10 or 100 ml) was removed, and CuSO4 was added to a final concentration of 1 mM. Samples of equal volumes were subsequently withdrawn at 0.5, 1, 2 and 4 h after addition of copper. In a different experiment, cells were grown for 12 h in the absence of copper and one sample was withdrawn. At this time, CdSO4, CuSO4, ZnSO4 or AgNO3 were added to a final concentration of 1 mM and samples were collected 0.5 h after addition of the metals. Total RNA was extracted by the hot phenol procedure (Khodursky et al., 2003
) and gene expression was analysed by Northern blotting. Approximately 10 µg RNA was fractionated in 1.5 % agarose-formaldehyde gel (Sambrook & Russell, 2001
). After electrophoresis, the RNA was transferred to Hybond-N membrane (Amersham Biosciences) and hybridized at 42 °C in hybridization buffer [50 % formamide, 5x SSPE, 5x Denhardt's solution, containing 1 mM EDTA, 0.5 % SDS and 80 µl salmon sperm DNA (10 mg ml–1)]. The whole coding sequences of copA and copB, radiolabelled by random priming, were used as probes. After overnight hybridization, blots were washed at 42 °C once in 1x SSC, 0.1 % SDS for 30 min, once in 0.5x SSC, 0.1 % SDS for 30 min, and once in 0.1x SSC, 0.1 % SDS for 30 min, and exposed to X-ray film.
Protein expression was analysed by Western blotting. Bacterial pellets from a 100 ml culture were resuspended in 50 mM Tris/HCl, pH 8.0, 50 mM NaCl, 2 M urea, 1 mM benzamidine and 1 mM PMSF, and cells were lysed by sonication (20 cycles of 9 s). Cell debris was removed by centrifugation at 2700 g for 3 min at 4 °C. Total protein (40 µg for CopA and 80 µg for CopB) was separated by electrophoresis on 9 % (for CopA) or 12 % (for CopB) SDS-polyacrylamide gels and electrophoretically transferred onto a nitrocellulose membrane. Immunoblotting was performed with anti-CopA and anti-CopB polyclonal antibodies raised in rabbits and horseradish peroxidase-conjugated goat anti-rabbit IgG (Sigma). The detection of proteins was carried out with ECL Western blotting detection reagents (Amersham Biosciences).
copA transposon mutagenesis.
To construct a copA mutant strain, the entire coding sequence was PCR-amplified from genomic DNA and cloned into the EcoRI site of pUC18. The transposon was inserted randomly into the plasmid using the EZ : : TN <KAN-2> insertion kit, according to the instructions of the manufacturer (Epicentre Technologies). One plasmid with the transposon inserted into the copA coding sequence at 408 bp from the start codon was selected for further use. This plasmid was used to transform Xac by electroporation (2400 V, 25 µF, 300
) (Sun et al., 2003
) and recombinant clones were selected on TSA medium containing kanamycin (transposon selection marker). The integration of the transposon into the chromosome by homologous recombination was confirmed by Southern blotting analysis, PCR amplification of the entire sequence of the copA gene with the oligonucleotide pair CopA-F and CopA-R, and sequencing of the amplified fragment using the specific primers KAN-2F (5'-ACCTACAACAAAGCTCTCATCAACC-3') and KAN-2R (5'-GCAATGTAACATCAGAGATTTTGAG-3'). The mutant strains were named copA : : Tn5.
Cell fractionation.
Wild-type cells were grown in 200 ml nutrient agar medium for 12 h in the absence of copper. At this time, CuSO4 was added at a final concentration of 1 mM and cells were collected 4 h after the addition of copper. Cells were rinsed, resuspended in 10 ml 10 mM Tris/HCl, pH 8.0, buffer containing 20 % sucrose and 3 mg lysozyme ml–1 (Lee et al., 2001
), and incubated on ice for 1 h to produce spheroplasts. After centrifugation (11 000 g, 30 min) the proteins in the supernatant were concentrated by precipitation with 20 % TCA on ice for 30 min. After centrifugation (11 000 g, 10 min) the proteins (mainly periplasmic proteins) were washed with 70 % ethanol and resuspended in 10 mM Tris/HCl, pH 8.0, 10 mM EDTA buffer. The pellet was gently rinsed in 10 mM Tris/HCl, pH 8.0, buffer containing 20 % sucrose, resuspended in 10 mM Tris/HCl, pH 8.0, 10 mM MgCl2 buffer and the spheroplasts were lysed by sonication (cycles of 9 s sonication and 9 s on ice for 4 min). Cell debris and nucleic acids were removed by centrifugation at 7000 g for 15 min and the supernatant was centrifuged at 80 000 g for 3 h to separate the cytoplasmic proteins in the supernatant. The pellet consisting of membrane proteins was resuspended in 10 mM Tris/HCl, pH 8.0, 10 mM EDTA buffer containing 0.5 % Igepal CA-630. Total proteins in the cell fractions (periplasm, cytosol and cytoplasmic membrane) were quantified and approximately 40 µg was separated by electrophoresis on 9 % (for CopA) or 12 % (for CopB) SDS-polyacrylamide gels. CopA and CopB were identified by Western blotting as described above.
In vitro and in vivo growth of strain copA : : Tn5.
Cells of three mutant strains were evaluated in vitro for their ability to grow in the absence and presence of different concentrations of CuSO4. Wild-type and mutant strains were grown in nutrient agar medium, pH 7.0, with phosphate buffer in the absence and in the presence of 0.25, 0.5, 0.75 and 1.0 mM CuSO4, at 28 °C and 250 r.p.m. for 24 h. Growth was evaluated by measuring OD550. For in vivo analysis, lemon leaves were used as host for hypersensitivity tests of the wild-type and mutant strains. Plants were grown in chambers at 28 °C with artificial light, and the inoculum consisted of a bacterial suspension in phosphate buffer adjusted to an OD600 of 0.3. For hypersensitivity tests, wild-type and mutant strains were used to inoculate plant leaves in the absence and presence of 0.25, 0.5, 0.7, 1 and 2 mM CuSO4. A sample (100 µl) of cell suspension was infiltrated into the leaves by using a needleless syringe. Initial symptoms (water-soaking) were visualized 5 days after infection (a.i.) and symptoms characteristic of citrus canker disease (rust lesions) were visualized around 20 days.
Bacterial growth in lemon leaves was quantified after inoculating cells of wild-type and mutant strains in the absence and presence of 1 mM CuSO4. The inoculum consisted of a ten-times dilution of cell suspensions at an OD600 of 0.01. Leaf discs (0.9 cm diam.) were taken at 0, 2, 4, 6, 8, 10 and 12 days a.i. The discs were macerated in 1 ml sterile water in an Eppendorf tube, then the solutions were serially diluted and plated on TSA medium with (for mutant strain) and without kanamycin. The mean number of colonies from a minimum of five discs of the respective dilution was calculated and strain growth was quantified.
| RESULTS |
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kibler/pubs/TR03) were not found at the end of copA; instead, some of them were identified at the beginning of the copB coding region (Fig. 1b
The coding regions of copA and copB were PCR-amplified from Xac genomic DNA using primers based on the Xac genome sequence (http://genoma4.iq.usp.br). The copA gene encodes a 593 aa protein (CopA), which displays identity varying from 60–84 % with homologues from phytopathogens such as Pseudomonas, Xanthomonas and Xylella. The 364 aa CopB protein displays 40–60 % identity with homologues from the same phytopathogens. Sequence alignment of CopA proteins from different Pseudomonas and Xanthomonas species revealed the existence of two domains: one highly conserved domain extending from the N-terminal region to the middle of the protein, and another highly conserved domain at the C-terminal region (Fig. 2
). The C terminus contains the highly conserved domain His-X48-Cys-X4-His-X4-Met, a putative type-1 copper-binding site, found in multicopper oxidase enzymes (Fig. 2
). In Xac this site involves the amino acid residues His526, Cys575, His580 and Met585. In addition, pairs of histidines, described as potential metal-binding sites, are present in the amino acid sequence. A phylogenetic analysis of CopA homologues revealed that the Xac protein clusters within a clade of Xanthomonas proteins distinct from Pseudomonas proteins (result not shown).
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One copA : : Tn5 strain was analysed for its ability to synthesize CopA and CopB during growth in the presence of copper. The strain was not able to produce both proteins, even after addition of copper to the culture medium, showing a complete loss of copper induction. This result confirms that the mutation in copA is polar (compare Fig. 4b
with Fig. 4a
for CopA, and Fig. 4d
with Fig. 4c
for CopB) and, therefore, the copAB operon is inactive in the mutant strains. The three mutant strains were also analysed for their ability to grow at copper concentrations varying from 0.25 to 1 mM CuSO4, concentrations at which the wild-type strain can grow. All mutant strains were extremely sensitive to copper compared to the wild-type strain, exhibiting drastic growth reduction at copper concentrations as low as 0.25 mM (Fig. 6
).
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| DISCUSSION |
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Gene expression analysis of the cop operon demonstrated the presence of the copAB transcript only when copper was added to the culture medium. Following copAB transcript accumulation, CopA and CopB were induced, confirming copper-induced transcription coupled to translation. We could not identify regulatory DNA elements at the region upstream from the cop operon similar to the copper box element located at the promoter regions of the pco operon in E. coli and the cop operon from P. syringae (Mills et al., 1994
; Rouch & Brown, 1997
). These systems are both regulated by two proteins belonging to the two-component regulatory system. This element was described as being essential for copper-inducible activity of both promoters. However, we identified a short ORF (XAC3629), upstream from the Xac copAB operon, that encodes a protein with 26 % identity to CopL from Xav strain 7882 (Voloudakis et al., 2005
). The same gene is located upstream from the cop operon in Xcc (da Silva et al., 2002
) and in the citrus phytopathogen Xyllela fastidiosa (Simpson et al., 2000
). Interestingly, Xav strain 7882 lacks copR and copS which encode proteins belonging to a two-component regulatory system. CopL was found to be required for full copper-inducible expression of copA in Xav. However, a possible role for CopL in copAB copper-inducible transcriptional regulation remains to be determined. Thus, two distinct mechanisms regulating cop gene transcription regulation seem to exist in phytopathogens: one dependent on the copper-inducible two-component signal transduction mechanism, and the other depending on the copL regulatory gene.
copA transcription in E. coli was also induced by copper and analysis of the copA promoter region revealed the presence of DNA elements characteristic of promoters regulated by the metalloregulatory proteins of the MerR family, transcriptional regulators found in a large number of Gram-positive and Gram-negative bacteria (Outten et al., 2000
). However, CopA from E. coli is an ATPase (Rensing et al., 2000
) that transports free copper from the cytoplasm to the periplasm, whereas CopA from phytopathogens, in general, may work by sequestering copper ions in the periplasm, suggesting a mechanism that prevents the build up of toxic levels of free copper ions in the cytoplasm (Cha & Cooksey, 1991
). Sequence alignment of CopA proteins from phytopathogens suggested that the protein is arranged in a two-domain structure, with a putative type 1 binding site for copper at the C-terminal domain (Fig. 2
). This site shows strong identity to the copper site in multicopper oxidases and is also found in CopA proteins from Pseudomonas and from different species of Xanthomonas. However, copper binding to this site has not yet been determined directly. A common characteristic among CopA proteins is the high histidine residue content (32 in Xac CopA), and these residues have been described as copper ligands in ascorbate oxidase (Messerschmidt et al., 1989
), and could probably account for the large number of copper atoms bound by CopA. Cha & Cooksey (1991)
demonstrated that CopA from P. syringae pv. tomato was able to bind up to 11 atoms of copper per molecule.
The CopA protein location in the cytosol of Xac is surprising based on its polypeptide sequence. While a putative N-terminal signal peptide was not identified by bioinformatic tools (http://bp.nuap.nagoya-u.ac.jp/sosui), the protein does have an N-terminal sequence that harbours the consensus SRRXFLK twin arginine motif (17-SRRRFVQ-23 in Xac) and targets proteins for export to the periplasm by the Tat (twin arginine translocation) pathway (Berks et al., 2003
). Deletion mutants in the Tat pathway of different pathovars of Pseudomonas syringae display a range of pleiotropic phenotypic changes, including defects in siderophore production and a decrease in copper resistance (Bronstein et al., 2005
; Caldelari et al., 2006
). CopB was demonstrated to be located in the cytoplasmic membrane of Xac, in agreement with the prediction of the presence of a putative signal peptide spanning the first 20 N-terminal amino acids (http://bp.nuap.nagoya-u.ac.jp/sosui). The cellular location of Cop proteins in other phytopathogens has not been investigated. In Pseudomonas syringae pv. tomato, both CopA and CopB were described as periplasmic proteins (Cha & Cooksey, 1991
). However, copper resistance mechanisms differ even among different Pseudomonas pathovars (Feil et al., 2005
). If CopA in Xac binds copper, based on the presence of the copper-binding site domain at the C terminus, one may ask in what form is copper available in the cytosol, and more importantly how do Cop proteins work in copper resistance in Xac? Recently Dann et al. (2007)
described, for the first time, the existence of a metalloregulatory mechanism involving metal-dependent, allosteric regulation of RNA structure, suggesting the possibility of RNA-based metal sensors.
We have examined the participation of the copAB gene products in the copper resistance mechanism in Xac in two different ways. First, we analysed the specificity of transcription induction using several metal ions and found that transcription was only induced by copper. Among the metal ions tested, Zn(II) is the most similar trace element to Cu(II) and transcription induction of the cop operon was not observed with this metal. In Xac there is no evidence for the mechanism determining metal specificity, since genes encoding regulatory proteins are not part of the cop operon. Second, we inactivated the copAB operon by introducing a polar mutation into copA and analysed the mutant strain for its ability to grow in culture medium containing copper or in host-plants inoculated in the presence of copper. These studies allowed us to confirm the in vivo role of the proteins in Xac copper resistance. The mutant strain was not able to grow on medium containing copper even at low concentrations. Although the mutant strain caused disease symptoms in a similar way to that observed in the wild-type strain in the absence of copper, the in planta cell growth was significantly impaired in the presence of copper and the appearance of symptoms was delayed compared to the wild-type strain. Finally, it is important to point out that the presence of the symptoms in plants inoculated with the mutant strain in the presence of 0.7 mM CuSO4 may represent a movement of the bacteria from an environment of high copper concentration to one of low copper concentration once inside the leaves. The role of CopA and CopB in copper resistance was corroborated by in planta growth curves in the presence of copper. Growth reduction of 10- to 100-fold was observed in the mutant strain compared to the wild-type strain at 2 and 12 days a.i., respectively. As far as we know this is the first evidence of both proteins mediating copper resistance in a phytopathogen–plant host interaction. The findings of this study reinforce the central role of CopA and CopB for copper resistance in Xac, but also indicate that the mechanism must involve the concerted action of different proteins. Improved knowledge of how these other proteins act on the global copper resistance mechanism will provide insights into new therapeutic targets against bacterial pathogens.
| ACKNOWLEDGEMENTS |
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Edited by: M. S. Ullrich
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Received 11 April 2007;
revised 5 October 2007;
accepted 31 October 2007.
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