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1 Department of Biomedical Sciences, Oregon State University, Corvallis, OR 97331, USA
2 TechLab, Inc., 2001 Kraft Drive, Blacksburg, VA 24060, USA
3 Department of Molecular, Microbial and Structural Biology, University of Connecticut Health Center, Farmington, CT 06030, USA
4 Department of Microbiology, Oregon State University, Corvallis, OR 97331, USA
Correspondence
Mahfuzur R. Sarker
sarkerm{at}oregonstate.edu
| ABSTRACT |
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These authors contributed equally to this work.
| INTRODUCTION |
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Spore germination has been well studied in Bacillus subtilis, and can be initiated by a variety of factors (termed germinants), including nutrients, cationic surfactants such as dodecylamine, enzymes, hydrostatic pressure and a 1 : 1 chelate of Ca2+ and pyridine-2,6-dicarboxylic acid (dipicolinic acid; DPA) (Paidhungat & Setlow, 2000
; Paidhungat et al., 2002
). Nutrient germinants for spores of Bacillus species include L-alanine, D-glucose, inosine and a mixture of L-asparagine, D-glucose, D-fructose and K+ ions (AGFK) (Clements & Moir, 1998
; Moir et al., 2002
; Setlow, 2003
). The receptors that sense nutrient germinants are located in the spore inner membrane, and nutrient germinant receptor–ligand binding stimulates the release of monovalent cations (H+, Na+ and K+), divalent cations (Ca2+, Mg2+ and Mn2+), and the spore large depot (
20 % of core dry weight) of DPA (Setlow, 2003
). DPA is released in exchange for some water as a 1 : 1 chelate with divalent cations, predominantly Ca2+ (Ca–DPA), and Ca–DPA release triggers downstream events in spore germination. Most important among the latter is the hydrolysis of the spore peptidoglycan (PG) cortex by one or more cortex-lytic enzymes (CLEs), which allows the core to expand and take up even more water, thus reaching the hydration levels found in growing cells. The latter event restores protein movement and enzyme action in the spore core, and leads to the resumption of energy metabolism and macromolecular synthesis (Cowan et al., 2003
; Setlow, 2006
). Spore germination in Clostridium species is less well studied than in B. subtilis. Limited studies have shown that spores of Clostridium botulinum, Clostridium sporogenes and Clostridium perfringens germinate in response to certain amino acids and salts (Ando, 1974
; Broussolle et al., 2002
; Paredes-Sabja et al., 2008c
). Spores of C. difficile strains also germinate in nutrient media with bile salts, and glycine and bile salts have recently been reported to be co-germinants (Sorg & Sonenshein, 2008
; Wilson et al., 1982
; Wilson, 1983
). However, the precise mechanism of action of germinants in spores of this species is unclear, since genes for nutrient germinant receptors appear to be absent from the C. difficile genome (Sebaihia et al., 2006
).
In this study, we have investigated the germination of spores of C. difficile, including some clinical isolates obtained from a CDAD outbreak (CDAD isolates) (McEllistrem et al., 2005
). Major findings on these C. difficile spores were that: (1) they germinated well with a complex nutrient-rich medium, but not with individual nutrients; (2) their germination was not accelerated significantly by bile salts; (3) they germinated well with KCl or inorganic phosphate (Pi); and (4) they germinated well with both Ca–DPA and the cationic surfactant dodecylamine.
| METHODS |
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Spore preparation.
Starter C. difficile cultures (10 ml) were prepared by overnight growth at 37 °C in TGY-vegetative medium (3 % tryptic soy broth, 2 % glucose, 1 % yeast extract, 0.1 % L-cysteine). To prepare C. difficile spores, we first compared sporulation of C. difficile strain JIR8094 in a sporulation medium (SM) used earlier for C. difficile sporulation (Wilson et al., 1982
) versus Duncan–Strong (DS) medium, a sporulation medium used routinely for C. perfringens (Duncan & Strong, 1968
; Kokai-Kun et al., 1994
). Sporulating cultures were prepared by inoculating 0.6 ml TGY starter culture into 10 ml of each medium, followed by incubation for 24 h at 37 °C. Since similar levels of sporulation of C. difficile were observed (
107 spores ml–1) in both SM and DS media (data not shown), C. difficile spores were routinely prepared using DS medium.
For spore purification, spore suspensions were prepared in 600 ml DS medium. Spores were cleaned of debris by repeated centrifugation and washing with sterile distilled water, and were resuspended in distilled water at OD600
6 and stored at –20 °C until use (Paredes-Sabja et al., 2008c
). All spore preparations used in this work were >99 % free of sporulating cells, cell debris and germinated spores, as determined by phase-contrast microscopy.
Assessment of colony-forming efficiency of spores.
To assess the colony-forming efficiency of C. difficile spores, spore suspensions at an OD600 of 1 were heat activated at 80 °C for 10 min, aliquots of dilutions were plated on Brain Heart Infusion (BHI) agar, the plates were incubated at 37 °C anaerobically for 24 h, and colonies were counted to determine c.f.u. ml–1. The number of spores per ml was counted directly by phase-contrast microscopy using a counting chamber (Model Z30000, Weber Scientific), and the percentage of spores that gave rise to colonies on BHI agar was calculated as [c.f.u. (OD600 unit)–1 ml–1]/[spore count (OD600 unit)–1 ml–1]x100 %.
Spore germination.
Preliminary experiments indicated that C. difficile spore germination was more efficient when spores were heat activated at 80 °C for 10 min rather than at 60, 70 or 90 °C (data not shown), as is also the case for C. perfringens spores (Paredes-Sabja et al., 2008c
). Consequently, all germination experiments used heat-activated spores unless noted otherwise. After heat activation, spores were cooled to room temperature, sonicated briefly to break up any clumps and incubated at 40 °C for 10 min before addition of germinants, and the OD600 of the spore suspensions was measured to assess spore germination (Smartspec 3000 Spectrophotometer, Bio-Rad Laboratories); levels of spore germination were also confirmed by phase-contrast microscopy.
Germination in nutrient medium was performed in BHI broth. Germination with bile salts and/or glycine was carried out in 10 mM Na2HPO4 buffer (pH 7.5) to reduce the background germination caused by Pi (see below). Germination was routinely carried out aerobically, since no difference in germination kinetics was detected under anaerobic conditions (data not shown), and was in 25 mM sodium phosphate buffer (pH 7.5) unless noted otherwise. Spore germination kinetics exhibited no significant difference when assessed at 37 or 40 °C (data not shown). Thus, to allow direct comparison with previous studies of germination of C. perfringens spores (Paredes-Sabja et al., 2008b
, c
), spore germination of C. difficile was carried at 40 °C. No noticeable spore clumping was observed during germination assays. The extent of spore germination was determined by measuring the decrease in OD600 of germinating spore suspensions, and was expressed as a percentage of the initial OD600. Since a decrease in OD600 of
65 % corresponds to
99 % spore germination as assessed by phase-contrast microscopy, the percentage decrease in the OD600 was converted to the percentage germination by taking an OD600 decrease of 65 % as 100 % germination. The rate of germination was expressed as the maximum rate of loss of OD600 of spore suspensions relative to initial values. To evaluate effects of pH on spore germination rates, germination was performed in 25 mM sodium citrate buffer (pH 2 and 4), 25 mM sodium phosphate buffer (pH 2, 5 and 7.5) or 25 mM Tris/HCl buffer (pH 8.5) at 40 °C. All values reported are averages of two experiments performed with two independent spore preparations, and individual values varied by
15 % from the average.
For germination with dodecylamine, spores at OD600
1 were used without heat activation, since this had no effect on germination with this agent, as has been found for spores of other species (Paredes-Sabja et al., 2008c
). Spores were incubated at 60 °C with 1 mM dodecylamine in 25 mM Tris/HCl buffer (pH 7.4). Aliquots (1 ml) of germinating cultures were centrifuged at 16 110 g for 2 min in a microcentrifuge, and DPA in the supernatant fluid was measured by monitoring OD270. The total OD270 that could be released from these spores was determined by boiling a sample of dormant spores at an OD600 of 1 for 60 min, followed by cooling on ice, centrifugation and measurement of the OD270 of the supernatant fluid as described previously (Cabrera-Martinez et al., 2003
; Setlow et al., 2003
). All experiments with dodecylamine were repeated at least twice, and results for different experiments differed by
5 %.
For germination with Ca–DPA, spores were germinated with or without prior heat activation, cooled to room temperature, diluted to OD600
1.5 and incubated at 40 °C with Ca–DPA (50 mM CaCl2, 50 mM DPA adjusted to pH 8.0 with Tris/HCl), as described previously (Paredes-Sabja et al., 2008c
). At various times, 1 ml aliquots were centrifuged for 2 min in a microcentrifuge, and the spore pellet was washed four times with sterile distilled water and suspended in 1 ml sterile water. Residual spore core DPA content was determined by boiling samples for 60 min, centrifuging them for 5 min, and measuring the OD270 of the supernatant fluid as described previously (Cabrera-Martinez et al., 2003
; Setlow et al., 2003
). The change in the OD600 of spore cultures during germination with Ca–DPA was also measured as described above. All experiments with Ca–DPA were repeated at least twice, and results for different experiments differed by
5 %.
Measurement of spore core DPA content.
Spore DPA content was measured by boiling 1 ml spores at OD600 6 for 60 min, followed by cooling on ice, centrifuging at 16 110 g for 5 min, and assaying DPA in the supernatant fluid chemically as described elsewhere (Rotman & Fields, 1968
).
| RESULTS |
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10 % of spores became phase dark after 60 min incubation at 40 °C. Heat activation at 80 °C for 10 min enhanced germination of the spores of these strains with glycine plus bile salts, but only to a small extent, and the germination of JIR8094 and Pitt301 spores with glycine with or without bile salts was significantly less than that obtained in BHI broth (Table 1
While combinations of bile salts and glycine seemed to have no major effect on germination of C. difficile spores, individual amino acids and some salts can induce germination of spores of many Bacillus and Clostridium species (Broussolle et al., 2002
; Clements & Moir, 1998
; Paredes-Sabja et al., 2008c
; Rode & Foster, 1962
). Consequently, a number of individual components of BHI broth, in particular free amino acids, were tested to identify the specific germinant(s) that trigger C. difficile spore germination. However, none of the 20 tested amino acids induced germination of spores of the six C. difficile strains (Table 2
; data not shown). Indeed, germination with these amino acids was similar to that with phosphate buffer alone when germination was assessed either by the decrease in OD600 of germinating cultures or by phase-contrast microscopy (Table 2
). Interestingly, phosphate buffer also triggered the germination of a small but significant percentage of C. difficile spores after 60 min of incubation, with 5–20 % of the spores becoming phase dark (Table 2
; data not shown). As found with spores of C. perfringens (Paredes-Sabja et al., 2008c
), C. difficile spores did germinate in AK (a mixture of 100 mM asparagine plus 100 mM KCl) (Table 2
). However, much of the effect of AK appeared to be due to the KCl, as KCl alone gave significant germination of spores of all C. difficile isolates, while asparagine alone was ineffective (Table 2
). In contrast to the stimulation of C. difficile spore germination by KCl, NaCl was ineffective (Table 2
). Other potassium salts stimulated spore germination, but not as well as KCl; the general order of effectiveness was KCl >KBr
KH2PO4 >KI (Table 2
). Previous work has shown that spores of C. perfringens (Paredes-Sabja et al., 2008c
) and Bacillus megaterium QM B1551 (Christie & Lowe, 2007
; Rode & Foster, 1962
) are also germinated by salts, in particular K+ salts, alone.
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60 min (Fig. 2c
99 % of the spores from both isolates becoming phase dark after 60 min incubation (data not shown).
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200 mM Pi (Fig. 2e
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80 % of the spore DPA after 80 min (Fig. 3
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80 % with Ca–DPA, as measured by both OD600 decrease and loss of DPA (data not shown). These results were confirmed by phase-contrast microscopy, as
80 % of JIR8094 and Pitt301 spores became phase dark after 60 min incubation with Ca–DPA (data not shown). Heat-activated spores of C. perfringens also germinate with Ca–DPA (Paredes-Sabja et al., 2008c
Bioinformatic analyses of C. difficile germination apparatus
Although no homologue of the gerA family of operons that encode nutrient germinant receptors is present in the genome of C. difficile 630 (Sebaihia et al., 2006
), C. difficile spores must have some way to sense when conditions are appropriate for the spores to germinate. Indeed, current and previous studies (Sorg & Sonenshein, 2008
; Wilson et al., 1982
; Wilson, 1983
) have shown that spores of various C. difficile strains are able to initiate germination in response to individual compounds. However, how these compounds are sensed is not clear; perhaps they directly activate CLEs or the release of Ca–DPA.
While genes encoding nutrient germinant receptors appear to be absent from the C. difficile 630 genome, genes encoding CLEs and SpoVA orthologues are present (Sebaihia et al., 2006
), with the SpoVA proteins possibly involved in DPA release during spore germination and in DPA uptake during sporulation (Vepachedu & Setlow 2007
). The spoVA locus in C. difficile consists of three ORFs, CD0773, CD0774 and CD0775, and the organization of the C. difficile spoVA operon resembles that of C. perfringens with the order spoVAC, spoVAD and spoVAE (Myers et al., 2006
; Sebaihia et al., 2006
). Three CLE orthologues are encoded in the C. difficile genome. C. difficile ORF CD0551 encodes a 423-residue protein with high similarity (67 %) to a C. perfringens CLE, SleC, that is suggested to cause local changes in the structure of cortical PG through its lytic transglycosylase and N-acetylmuramyl-L-alanine amidase activity (Kumazawa et al., 2007
). CD0552 is annotated as sleB and encodes a 238-residue protein, but shares no similarity with CLEs from C. perfringens and B. subtilis. The third potential CLE in C. difficile is ORF CD3563, which encodes a 168-residue protein with 70 % similarity to B. subtilis sleB.
| DISCUSSION |
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10 mM in the ileum to
75 mM in the colon (Johnson, 2000
18 mM in BHI broth) and to the K+ ions present in this medium, since the levels of K+ ions are likely significant. Levels of K+ ions and Pi are also significant in meat products (50–80 and 42–60 mM, respectively) (USDA; http://www.nal.usda.gov/fnic/foodcomp/search/), so there could be significant spore germination in foods that are held for significant periods at temperatures that allow germination. However, we have not studied the K+- and Pi-dependent germination of C. difficile spores at different temperatures, and the temperature at which foods are held could greatly influence K+- and Pi-dependent C. difficile spore germination.
A novel and unexpected finding in this work was that C. difficile spores germinated well at pH 6 with Pi alone. To our knowledge, Pi has not been reported to induce germination of bacterial spores, although Pi at pH 5.5–6.7 induces sporulation of C. perfringens (Philippe et al., 2006
). The precise mechanism of initiation of C. difficile spore germination by Pi is not known. However, again this might be advantageous for C. difficile spores in at least one of their natural habitats. The pH in the first centimetre of the duodenum is 2.0–3.5, and gradually increases due to secretion of bicarbonate, reaching pH 5.0–6.0 near the mid-duodenum (Rune, 1973
), where Pi could trigger germination of C. difficile spores. Pi is ubiquitous in the diet of healthy Western adults, and is present in the human intestinal lumen at 15–30 mM (Lemann, 1993
; Walton & Gray, 1979
). As shown in this work, this Pi concentration will induce germination of C. difficile spores.
One major conclusion from the identification of K+ ions and Pi as effective germinants for C. difficile spores is that ingested spores that survive stomach acidity (Jump et al., 2007
) could germinate in any of three different segments of the GI tract: (1) the early duodenum, where the pH is
6.0; (2) the small intestine, triggered by unidentified compounds, perhaps bile salts; and (3) the colon, where high levels of K+ would trigger germination of the remaining dormant spores. However, CDAD symptoms affect primarily the large intestine and rarely the small intestine (Hurley & Nguyen, 2002
), perhaps because either most C. difficile spores germinate primarily in the large intestine due to the presence of K+ ions or spores do germinate in early segments of the GI tract but do not outgrow appreciably in the small intestine and only outgrow, colonize, release toxins (TcdA and TcdB) and cause CDAD symptoms in the large intestine.
Clearly, a significant unresolved paradox about the major findings in this work is how C. difficile spores respond to and initiate germination with K+ ions and Pi in the apparent absence of the receptors that recognize specific germinants. One possible explanation is that K+ ions and Pi directly activate a CLE and/or Ca–DPA release. Ongoing work is thus oriented towards investigating the roles played by a number of proteins, including CLEs that may be involved in cortex PG hydrolysis (Foster & Johnstone, 1987
; Ishikawa et al., 1998
; Makino et al., 1994
; Miyata et al., 1995
, 1997
; Shimamoto et al., 2001
) and SpoVA proteins implicated in Ca–DPA release (Paredes-Sabja et al., 2008b
), in the germination of C. difficile spores with K+ and Pi. The resolution of the paradox noted above as well as a more thorough understanding of the germination of C. difficile spores may well have applications in the areas of public health and food safety.
| ACKNOWLEDGEMENTS |
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Edited by: T. Abee
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Received 8 January 2008;
revised 21 April 2008;
accepted 8 May 2008.
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