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1 School of Chemistry, University of Edinburgh, Edinburgh EH9 3JJ, UK
2 Centre for Infectious Diseases, University of Edinburgh, Edinburgh EH16 4SB, UK
3 Institute of Molecular Plant Sciences, University of Edinburgh, Edinburgh EH9 3JH, UK
Correspondence
John R. W. Govan
john.r.w.govan{at}ed.ac.uk
| ABSTRACT |
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Three supplementary tables and a supplementary figure are available with the online version of this paper.
| INTRODUCTION |
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Although most species within the Bcc produce a variety of putative virulence factors, the role of these factors in the pathogenesis of human infection is unclear (Mahenthiralingam et al., 2005
). Evidence from various model systems (mouse, rat, plant and nematode) suggests that the importance of individual virulence factors, or combinations of factors, depends on the infection model used (Bernier et al., 2003
). In addition, studies of Bcc infections in CF patients also suggest a key role of host–pathogen interactions, since clinical outcome in individual patients cannot be predicted even during epidemic outbreaks when multiple patients are infected by the same strain (Govan et al., 1993
). The first description of pathogenicity in the Bcc was based on sour skin rot of onion bulbs (Burkholder, 1950
). In this study, we returned to this plant host to investigate the onion-associated phenotype of the Bcc, and reveal a link between growth conditions and exopolysaccharide (EPS) production.
EPS is a putative Bcc virulence factor that is involved in persistence of the bacteria in CF lungs (Conway et al., 2004
), interactions with antimicrobial peptides (Herasimenka et al., 2005
) and the formation of biofilms (Cunha et al., 2004
). The EPSs of Burkholderia species have recently been comprehensively reviewed (Goldberg, 2007
). Recent studies (Zlosnik et al., 2008
) have also challenged the previous belief that mucoid, EPS-producing colonial morphotypes of Bcc are rare in both environmental and clinical isolates (Govan & Deretic, 1996
). Other studies have shown that mucoid Bcc isolates mostly synthesize one type of EPS, with a highly branched heptasaccharide repeating unit, which was named cepacian (Moreira et al., 2003
; Sist et al., 2003
). EPS production has been shown to increase when the Bcc are grown in mannitol-rich yeast extract medium (MYEM) (Sage et al., 1990
; Zlosnik et al., 2008
).
Here we report the novel observation that many Bcc isolates, found to be non-mucoid on typical culture media, produce copious amounts of EPS when onion tissue is provided as the sole nutrient. Chemical and molecular analyses suggest that EPS biosynthesis is strain-specific and that the plant compounds responsible are primarily sugars and sugar alcohols. We show that the EPS phenotype on onion media is associated with the previously described bce cluster (Moreira et al., 2003
), thought to be involved in cepacian biosynthesis.
| METHODS |
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Onion maceration.
White onion slices were placed in Petri dishes and inoculated with stationary-phase Bcc cultures (106 c.f.u.) that had been cultured overnight in 2.5 % (w/v) nutrient broth No 2 (Oxoid) with 0.5 % (w/v) yeast extract. The onions were left at 30 °C for 5 days. The results were assessed by eye, and onion maceration recorded as positive or negative.
Onion extract agar.
Peeled white onions (1 kg) were chopped, homogenized in a blender at room temperature, and filtered through muslin. The filtrate was filter-sterilized through a 0.22 µm filter and lyophilized to give a yellow sticky powder (typical yield 62 g). Twenty grams of lyophilized onion extract and 15 g bacteriological agar were made up to 1 l with distilled H2O, then autoclaved at 121 °C for 15 min. Strains were subcultured onto onion agar and incubated for 72 h at 30 °C. Mucoidy was recorded on a scale ranging from non-mucoid (–) to very mucoid (+++).
Sugar agar.
Sugar agar contained 20 g of the sugar of interest, 2 g yeast extract, and 15 g bacteriological agar dissolved in 1 l distilled H2O (Sage et al., 1990
). The sugars used were as follows: D-fructose, D-galactose, D-mannitol, D-glucose, glycerol, lactose, L-rhamnose, D-mannose, maltose, sucrose, myo-inositol, ribitol (adonitol) and D-glucitol (sorbitol). The fructan polysaccharide inulin was also tested.
As a control, isolates were grown on bacteriological agar containing 0.2 % (w/v) yeast extract alone.
Reverse-phase chromatography.
Twenty millilitres of onion extract, 2 % (w/v) in distilled H2O, was loaded onto a pre-packed C8 column (10 g/60.0 ml, Varian, Anachem) and bound material was eluted stepwise using three concentrations of methanol (20 %, 50 % and 80 %, v/v; Fisher Scientific). Each fraction was lyophilized, dissolved in distilled H2O and incorporated into 1.5 % (w/v) bacteriological agar.
Ethyl acetate partitioning.
To separate any lipids, non-polar, non-acidic and polar compounds, the resolubilized onion extract was brought to pH 7.0 using NaOH and partitioned against ethyl acetate (Fisher Scientific) at 1 : 1 (v/v). The phases were separated, and the aqueous phase was brought to pH 2.0 using HCl and the extraction was repeated. Following both extractions, the organic and aqueous layers were evaporated or lyophilized respectively, and then redissolved in distilled H2O, pH adjusted to 7.0, and incorporated into 1.5 % (w/v) bacteriological agar.
Acid hydrolysis.
The aqueous phase residue of the ethyl acetate partitioned onion extract was redissolved in distilled H2O (50 mg ml–1) and was hydrolysed in 2 M TFA (trifluoroacetic acid; Sigma) at 60 °C or 120 °C for 1 h.
Paper electrophoresis.
To fractionate the extract based on the presence or absence of functional groups, the freeze-dried aqueous phase of the onion extract was weighed and resuspended in distilled H2O to a final concentration of 50 mg ml–1. One millilitre was loaded at a central origin on a Whatman no.1 paper (57x42 cm). The following standards were added in the margins of the paper: glucose 6-phosphate, glucose, glucosamine, methyl green (Sigma) and orange G (BDH). Electrophoresis was conducted at 1 kV for 20 min, in volatile buffers at pH 2.0 or 6.5 with white spirit or toluene as coolant (Fry, 2000
).
Paper chromatography.
One millilitre aliquots of each of the redissolved aqueous phase of the onion extract and the TFA-hydrolysed samples (50 mg ml–1) were chromatographed on Whatman no. 1 paper alongside markers (ferulic acid, rhamnose, glucose, lactose, mannose, galactose, fructose, mannitol and glycerol) in butan-1-ol/acetic acid/water (12 : 3 : 5, by vol.) for up to 60 h.
Staining and elution methods.
Electrophoretograms and chromatograms were stained with silver nitrate (Fry, 2000
) to reveal monosaccharides, oligosaccharides, alditols, saccharinic acids and phenols, and with aniline hydrogen phthalate to reveal monosaccharides and reducing disaccharides. The paper strips of interest from both methods were eluted by a syringe method with distilled H2O (Eshdat & Mirelman, 1972
). The eluted material was incorporated into 1.5 % (w/v) bacteriological agar with 0.2 % (w/v) yeast extract.
High-performance anion-exchange chromatography with pulsed amperometric detection (HPAE-PAD).
Twenty microlitres each of the aqueous phases of the onion extract and the TFA-hydrolysed samples (0.1 mg ml–1) were analysed by HPAE–PAD (Dionex). The system consisted of an AS3500 autosampler, GP40 gradient pump, ED40 electrochemical detector, and PC10 pneumatic controller. The amperometry detector cell contained a gold electrode and a pH-Ag/AgCl combination reference electrode. CarboPac MA-1, PA-1 and PA-100 columns and guard columns were used for the separation of alditols, monosaccharides and oligosaccharides, respectively. Eluents, degassed by bubbling with helium, were as follows: MA-1, 600 mM NaOH at 0.4 ml min–1 (isocratic); PA-1, 20 mM NaOH for 3 min, then H2O for 32 min, then a 0–200 mM NaOH gradient over 10 min (all at 1.0 ml min–1 with post-column addition of base); PA-100, 100 mM NaOH throughout, supplemented with a 0–200 mM NaOAc gradient over 30 min, then 200–800 mM NaOAc over 10 min (all at 1.0 ml min–1). Analytes were identified by comparison of retention times to those of standards and quantified by integration of peak area with Chromeleon software (Dionex).
Investigation of conserved EPS gene clusters in Bcc species.
Genome sequences representing five Bcc species were examined to determine if two previously published EPS gene clusters within B. cenocepacia J2315, the bce gene cluster (Moreira et al., 2003
) and the wcb gene cluster (Parsons et al., 2003
), are conserved across the Bcc. The amino acid sequences for every ORF within each of the two gene clusters within B. cenocepacia J2315 (genome sequence available at the Wellcome Trust Sanger Institute; http://www.sanger.ac.uk/) were used to search by TBLASTN the following Bcc genome sequences: Burkholderia ambifaria AMMD, Burkholderia vietnamiensis G4, B. multivorans ATCC 17616, Burkholderia sp. 383 (all sequences are available at the US Department of Energy Joint Genome Institute; http://www.jgi.doe.gov/) and Burkholderia dolosa AU0158 (available at the Broad Institute; http://www.broad.mit.edu/). TBLASTN searches were performed using default parameters (BLOSUM 62, Word size 3).
RT-PCR analysis of EPS biosynthetic gene clusters.
The EPS-producing strain, B. ambifaria AMMD, was cultured in 0.2 % (w/v) yeast extract with or without supplementation with 2 % (w/v) mannitol. RNA was extracted from mid-exponential phase cultures (RNeasy Protect Bacteria Mini kit; Qiagen) and DNase I-treated (RNase-free DNase set; Qiagen), prior to reverse transcription with 1.5 µg RNA template, random primers and SuperScript III Reverse Transcriptase (Invitrogen). cDNAs and corresponding non-RT controls were used as template in PCR reactions specific for two distinct wza homologues (Bamb_5549 and Bamb_3621) located within two separate putative EPS biosynthetic gene clusters. Primer sequences are available upon request.
PCR analysis of bceB gene.
Using the bceB gene sequence of B. cenocepacia J2315, bceB homologues were identified within the publicly available genome sequences of B. ambifaria AMMD, B. cepacia sp. 383, B. cenocepacia AU1054, B. cenocepacia HI2424, B. cenocepacia PC184, B. vietnamiensis G4 and B. dolosa AU0158. The eight gene sequences were aligned, and PCR primers flanking the location of the previously described 11 bp deletion in B. cenocepacia J2315 (Moreira et al., 2003
) were designed based on conserved regions across the eight aligned sequences (For 5'-TGAAGGCGGT[G/C]GCGATCGTC-3'; Rev 5'-TCGAT[G/C]CGCACGTCGTCGAG-3'). For preparation of genomic DNA, one or two bacterial colonies were resuspended in 20 µl lysis solution [0.25 % (w/v) SDS, 0.05 M NaOH] and incubated at 95 °C for 15 min. After brief centrifugation, 180 µl sterile water was added and centrifugation performed at 13 000 g for 5 min. Two microlitres of supernatant containing genomic DNA was used as template in PCR assays. PCRs were performed in a 50 µl volume containing 300 nM forward and reverse primer, 1.5 mM MgCl2, 260 µM of each dNTP, 4 % (v/v) DMSO, 1 U Taq polymerase (Invitrogen) and appropriate manufacturer's reaction buffer. Thermal cycling was performed on a GeneAmp PCR System 9700 (Applied Biosystems) with the following parameters: 94 °C 3 min; 40 cycles of 94 °C (30 s), 60 °C (30 s) and 72 °C (30 s); 72 °C 10 min. PCR products were electrophoresed on a 4 % E-Gel (Invitrogen) and visualized by UV illumination. The B. cenocepacia J2315 bceB gene sequence harbouring the 11 bp deletion yields a PCR product of 140 bp, compared to 151 bp from the wild-type sequence found in B. cenocepacia IST 432 (Videira et al., 2005
).
PCR analysis of BCESM and cblA.
Genomic DNA was prepared as described above. PCRs were performed as described previously (Mahenthiralingam et al., 1997
; Sajjan et al., 1995
).
Insertional inactivation of bceB in B. ambifaria AMMD.
Insertional inactivation of bceB was performed using the pG
Tp suicide vector, essentially as described previously (Flannagan et al., 2007
). In brief, a 300 bp fragment internal to the bceB ORF of B. ambifaria AMMD and flanked by XbaI and EcoRI sites was PCR-amplified and ligated into the corresponding sites in pG
Tp following appropriate restriction. Resulting plasmids were transformed into Escherichia coli GT115 competent cells (InvivoGen) and subsequently introduced into B. ambifaria AMMD by triparental mating. Resulting exconjugants were selected using gentamicin (50 mg l–1) and trimethoprim (100 mg l–1), and mutants identified by PCR using a chromosomal-specific primer in conjunction with the vector-specific primer RSF1300 (Flannagan et al., 2007
).
| RESULTS |
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To investigate which polysaccharide gene cluster is induced by growth on mannitol, the expression of representative genes from two distinct EPS gene clusters was assessed in B. ambifaria AMMD grown in the presence and absence of mannitol. The genes studied each encode homologues of the Wza EPS export protein: Bamb_5549 of the bce gene cluster (equivalent to bceE, BCAM0858 of B. cenocepacia J2315), and Bamb_3621 of the novel putative polysaccharide gene cluster described above (BCAM1330 of B. cenocepacia J2315). As shown in Fig. 3
, expression of Bamb_3621 was not observed under either growth condition. In contrast, expression of the bceE homologue (Bamb_5549) was clearly induced by the presence of mannitol. We therefore focused on the bce gene cluster to investigate why some Bcc isolates, most notably those of the B. cenocepacia ET12 lineage, failed to produce EPS under any growth conditions.
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| DISCUSSION |
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The reasons why EPS biosynthesis is readily induced by onion extracts and, in particular, by fructose and the hexitol sugars mannitol and glucitol require further investigation. An ability to respond to inulin was confined to certain strains, all of which responded well to fructose. This suggests that the fructan polysaccharide was only active in bacteria that can hydrolyse it to fructose. The ability of one strain (BTS7) to respond particularly strongly to inulin could possibly be due to its enhanced ability to hydrolyse inulin to fructose. Interestingly, the similar profile of EPS induction shown by fructose and alcohol sugars agrees well with a previous study which showed that the initial steps of utilization of these sugars in the Bcc differ from those in most other pseudomonads. Growth of Bcc on fructose involves active transport followed by fructokinase conversion to fructose 6-phosphate then degradation via the Entner–Doudoroff pathway (Allenza et al., 1982
). Growth on mannitol and glucitol also requires this pathway following active uptake and intracellular oxidation to fructose.
The role of Bcc EPS as a putative virulence factor is unclear. The influence of mannitol and other alcohol sugars on EPS production suggests that the prevalence of EPS in the Bcc may have been underestimated. In addition, given the variety of human, animal, plant and other models studied, the role of EPS may be influenced by the host involved and the route of administration. EPS has been associated with altered Bcc clearance in a mouse model of infection (Conway et al., 2004
), and EPS-deficient Bcc mutants displayed reduced mortality within a CGD mouse model (Sousa et al., 2007a
). Similarly, a role for EPS in persistence in human airways is suggested by its capacity to scavenge reactive oxygen species and inhibit neutrophil chemotaxis (Bylund et al., 2006
). In our study, EPS biosynthesis did not correlate with the ability to cause onion rot, which is perhaps to be expected since pectinases rather than EPS are likely to play the major role in the maceration of plant tissue. Cunha et al. (2004)
did not observe a clear correlation between EPS biosynthesis in vitro and the ability of Bcc strains to establish chronic infections within the CF lung. Recent evidence, however, suggests a subtle and unexpected role for Bcc EPS in CF lung infection. Consistent with our findings, Zlosnik et al. (2008)
reported that isolates of B. cenocepacia, the most virulent Bcc species, are most frequently non-mucoid. They also observed a mucoid to non-mucoid conversion in sequential isolates of Bcc from chronically infected CF patients. This apparent loss of mucoidy in vivo, and its absence in the virulent B. cenocepacia ET12 lineage, provides an intriguing contrast with the characteristic non-mucoid to mucoid conversion observed with alginate-producing P. aeruginosa. Zlosnik and colleagues suggest that Bcc EPS could be responsible for the persistence of Bcc in CF airways whilst loss of EPS leads to increased disease severity.
In our investigation of EPS biosynthesis determinants, we focused on the highly conserved bce gene cluster. Previously described by Moreira et al. (2003)
, the bce gene cluster has had several of its encoded proteins characterized (Ferreira et al., 2007
; Sousa et al., 2007b
; Videira et al., 2005
) and is thought to be involved in cepacian biosynthesis. In the present study, we demonstrated induction of the bce gene cluster by mannitol, and found a clear correlation between the inability of representatives of the B. cenocepacia ET12 lineage to produce EPS and the presence of an 11 bp deletion within the bceB gene, originally described within the genome sequence of B. cenocepacia J2315 (Moreira et al., 2003
). Consistent with this correlation, insertional inactivation of bceB, which encodes a glycosyltransferase, resulted in the loss of EPS production by B. ambifaria AMMD when grown on onion media. Combined, these observations highlight the pivotal role of the bce gene cluster in onion-induced EPS biosynthesis, and suggest that the observed EPS is cepacian. However, mutations elsewhere within the bce gene cluster, or in other EPS-related gene clusters, must be responsible for the lack of EPS biosynthesis in B. cenocepacia strain E3051 (Supplementary Table S1), and in other EPS-negative Bcc strains in our study which lack the 11 bp deletion in bceB (Supplementary Tables S2 and S3).
The ability of hexoses and hexitols, in particular mannitol, to enhance EPS biosynthesis in the B. cepacia complex has disturbing implications for therapeutic intervention in CF. Recent attempts to improve airway clearance with hypertonic saline 5 % (w/v) have been handicapped by the problem of salty taste and the salt-sensitive nature of many antimicrobial peptides. Thus, attention has turned to the use of non-ionic osmolytes, including inhaled mannitol (Daviskas et al., 2008
; Robinson et al., 1999
; Wills, 2007
), which is marketed as Bronchitol (Pharmaxis). Robinson and colleagues acknowledged that the majority of P. aeruginosa and Bcc isolates are able to utilize mannitol as a carbon and energy source. However, they felt that the nutritional influence of mannitol as a therapeutic osmolyte would be minimal given the abundance of other nutrients already present in CF respiratory secretions. On a cautionary note, they state that this potential problem would need to be confirmed by quantitative microbiology. The potential induction of virulence determinants during osmolyte therapy has to our knowledge not been considered. Our results also provide justification for the continued exclusion of CF individuals known to be infected with Bcc from ongoing trials of inhaled mannitol (http://clinicaltrials.gov; identifier NCT00117208 and NCT00251056).
| ACKNOWLEDGEMENTS |
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Tp and complementation vector pSCRhaB3. S. J. B., A. R. B., J. R. W. G. and D. J. C. thank the CF Trust and the Big Lottery Fund, D. J. C. and D. J. C. also thank the Royal Society of Edinburgh, and S. C. F. and B. R. M. thank the Biotechnology and Biological Sciences Research Council for financial support. Edited by: P. Cornelis
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Received 6 August 2007;
revised 2 May 2008;
accepted 5 May 2008.
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