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1 Haskins Laboratories, Pace University, New York, NY 10038, USA
2 Department of Chemistry and Physical Sciences, Pace University, New York, NY 10038, USA
3 Laboratory of Molecular and Cellular Parasitology and Infectious Disease Programme, Department of Microbiology, Yong Loo Lin School of Medicine, National University of Singapore, 117597, Singapore
Correspondence
Nigel Yarlett
nyarlett{at}pace.edu
| ABSTRACT |
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Present address: The University of Moscow Medical School, Moscow, Russia.
| INTRODUCTION |
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Adaptation to anaerobic environments has resulted in the evolution of modified energy-generating organelles, such as hydrogenosomes in the trichomonads (Lindmark & Müller, 1973
, 1974
), rumen protists (Yarlett et al., 1981
), rumen fungi (Yarlett et al., 1986
) and protists inhabiting the cockroach hind gut (Akhmanova et al., 1998
). Other recently described modified mitochondria include the mitosome of Entamoeba (Tovar et al., 1999
), the cryptic organelle of Giardia sp. (Marti et al., 2003
), the relict organelle in Cryptosporidium parvum (Keithly et al., 2005
) and the microsporidians Antonospora locustae and Encephalitozoon cuniculi (Burri et al., 2006
). These organelles have one or more of the following features in common with the mitochondrion – recognition of specific targeting sequences (Dacks et al., 2006
), production of ATP (Embley et al., 2003
; van Weelden et al., 2005
) and iron–sulfur cluster assembly (Tachezy et al., 2001
) – leading to the suggestion that these organelles all arose from a common ancestor. In this study we demonstrate the presence of key mitochondrial enzymes in Blastocystis and show they are localized in organelles previously described as MLO.
| METHODS |
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Fractionation.
Cells were broken under a stream of nitrogen gas by 40 strokes in a 10 ml Potter–Elvehjem tissue homogenizer at 4 °C in an isotonic buffer consisting of 200 mM sucrose (pH 7.2) containing 30 mM phosphate, 15 mM mercaptoethanol, 30 mM NaCl, 0.6 mM CaCl2, and 0.6 mM KCl. The broken cells were diluted with isotonic buffer that had been degassed under vacuum and the air replaced with nitrogen before centrifugation at 500 g for 10 min using a Sorvall RC-2B. The supernatant was further fractionated by centrifugation to give a large granular fraction (5000 g for 10 min), a small granular fraction (25 000 g for 20 min) and a final supernatant. Density gradients were prepared from 15 and 65 % (w/w) sucrose in 10 mM Tris/HCl buffer (pH 7.2), containing 0.7 mM EDTA and 15 mM mercaptoethanol. The large granular fraction (4 mg protein) and the small granular fraction (2 mg protein) were carefully layered on top of the gradients and centrifuged in a 6x12 ml swing-out rotor (Beckman OTD 65 ultracentrifuge) at 4 °C for 30 min at 46 000 g. Fractions (approx. 2 ml) from the gradient were collected under nitrogen and assayed immediately for enzyme activity. The density of the fractions was determined using a refractometer.
Enzyme analysis
Unless stated otherwise, enzyme assays were performed under anaerobic conditions using buffers, substrates and cofactors that had the air removed under vacuum and replaced with nitrogen. Cuvette additions were made in an anerobic chamber (Coy Laboratories) and Blastocystis protein (40–60 µg) was added to start the reaction by injection through a rubber septum.
(a) Enzymes characteristic of hydrogenosomes.
With the exception of formate dehydrogenase, assays performed for these enzymes used 40 µg Trichomonas vaginalis protein obtained as described by Lindmark & Müller (1973)
, as a positive control. Hydrogenase (EC 1.12.7.2) and pyruvate : ferredoxin oxidoreductase (PFOR; EC 1.2.7.1) were assayed by measuring the change in absorbance at 600 nm due to the reduction of methyl viologen [extinction coefficient (
)=8.25 mM–1cm–1] as described by Lindmark & Müller (1973)
. Hydrogenase was assayed using 100 mM potassium phosphate (pH 7.4), 20 mM methyl viologen and 250 mM 2-mercaptoethanol under a stream of hydrogen. PFOR was assayed using 100 mM potassium phosphate (pH 7.4), 20 mM methyl viologen, 250 mM 2-mercaptoethanol, 0.1 % Triton X-100, 0.25 mM coenzyme A (CoA) and 2.5 mM pyruvate. Malic enzyme (EC 1.1.1.40) was assayed using the method of Lindmark & Müller (1974)
in 6 mM triethanolamine (pH 6.8), 1 mM NADP+, 0.66 mM MnCl2 and 0.1 % Triton X-100. The reaction was started by the injection of 33 mM malate through a rubber septum and the change in absorbance at 340 nm (
NADP+=6.3 mM–1 cm–1) measured. Succinate thiokinase (STK; EC 6.2.1.5) was assayed as described by Lindmark & Müller (1974)
in Tris/succinate buffer (pH 7.4), 0.1 mM MgCl2, 1 mM CoA and 1 mM ATP. The reaction was started by the addition of protein and the change in absorbance at 235 nm (
ATP=40 mM–1 cm–1) compared to controls lacking ATP. Formate dehydrogenase (EC 1.2.1.2) was determined by the method of Nanba et al. (2003)
. The assay contained 40 mM phosphate buffer (pH 7.2), 0.5 mM sodium formate (pH 7.0), 5 mM NAD+, and protein to start the reaction. The absorbance change at 340 nm (
NAD+=6.3 mM–1 cm–1) was recorded for 10 min at 30 °C.
(b) Enzymes characteristic of mitochondria.
With the exception of pyruvate : NADP+ 2-oxidoreductase (PNO), assays for this group of enzymes used 30 µg rat liver homogenate (Fansler & Lowenstein, 1969
) as a positive control. PNO (EC 1.2.1.51) was determined in the forward direction using the method of Inui et al. (1987)
. The assay consisted of 100 mM potassium phosphate (pH 7.4), 2.5 mM pyruvate, CoA, 1 mM NADP+. The change in absorbance at 340 nm was measured at 37 °C for 10 min (
NAD+=6.3 mM–1 cm–1). The activity of PNO was also determined by replacing NADP+ with 1 mM FAD+ (
FAD+=11.7 mM–1 cm–1 at 446 nm), 1 mM FMN+ (
FMN+=12.5 mM–1 cm–1 at 450 nm), 0.5–5.0 mM NAD+ (
NAD+=6.3 mM–1 cm–1 at 340 nm), 0.1–1.0 mg Clostridium pasteurianum ferredoxin (
4Fe–4S ferredoxin=17.6 mM–1 cm–1 at 390 nm) or 0.1–1.0 mg Spinacia oleracea ferredoxin (
2Fe–2S ferredoxin=10.8 mM–1 cm–1 at 425 nm) as electron acceptor. Citrate synthase (EC 2.3.3.1) was assayed under aerobic conditions as described by Parvin (1969)
using 2.5 mM 5,5'-dithiobis-2-nitrobenzoic acid (DTNB) dissolved in 20 mM Tris/HCl (pH 8.0) as indicator (
DTNB=13.6 mM–1 cm–1 at 414 nm). The reaction contained 0.1 M Tris (pH 8.0), 0.25 mM DTNB, 0.2 mM oxaloacetate, 0.1 mM acetyl-CoA and Blastocystis protein. The change in absorbance was monitored at 414 nm for 10 min. Aconitase (EC 4.2.1.3) was determined by the method of Fansler & Lowenstein (1969)
. The homogenate was activated by incubation under nitrogen for 30 min at 30 °C with a 1 : 1 mixture of protein and 10 mM thiomalate containing 2 mM ferrous ammonium sulfate in Tris (pH 7.8), previously made anaerobic. The assay contained 20 mM Tris (pH 7.6), 50 mM NaCl, 2 mM cis-aconitate, and protein in a final volume of 1 ml. The change in absorbance was recorded at 240 nm (
cis-aconitate=3.5 mM–1 cm–1) for 15 min at 37 °C. Isocitrate dehydrogenase NADP+ (EC 1.1.1.42) was assayed using the coupled assay described by Cook & Sanwal (1969)
. The assay contained 0.16 M Tris/acetate (pH 7.6), 0.18 mM dichlorophenolindophenol (
=34.2 mM–1 cm–1 at 600 nm), 0.5 mM NADP+, 0.27 mM AMP, 0.83 mM isocitrate (pH 7.6) and protein to start the reaction. Blanks lacking enzyme were subtracted from the rate. The decrease in absorbance at 600 nm was measured for 10 min.
-Ketoglutarate dehydrogenase (EC 1.2.4.2) was assayed as described by Sanadi (1969)
, and contained 60 mM phosphate buffer (pH 7.6), 0.10 mM CoA, 35 mM cysteine (pH 7.0), 0.35 mM NAD+ (
=6.3 mM–1 cm–1) and 0.5 mM
-ketoglutarate. The absorbance change at 340 nm was monitored for 10 min after the addition of protein. Acetate : succinate CoA transferase (ASCT; EC 2.8.3.8) activity was using the radioactive method described by Van Hellemond et al. (1998
), in a mixture containing 50 mM succinate (pH 7.4), 1 mM [1-14C]acetyl-CoA (0.2 MBq), 50 mM Tris/HCl (pH 7.4), 10 mM MgCl2 and 0.05 % (v/v) Triton X-100. The reaction was started by the addition of protein and incubated for 20 min at 30 °C. The reaction was stopped with 10 % trichloracetic acid and cooled on ice. The [1-14C]acetate was separated by HPLC using a reverse-phase C-18 Percosil column (4.6x250 mm), 10 µm particle size (Perkin Elmer), with a linear gradient starting with 80 % 0.1 M NaH2PO4 (pH 3.25) containing 8 mM octanesulfonic acid changing to 100 % 0.1 M NaH2PO4 (pH 5.5) containing 8 mM octanesulfonic acid and 75 % (v/v) methanol in 30 min. Signals were recorded and integrated using a β-Ram model-2 radiometric detector (IN/US Inc.). Malate dehydrogenase (EC 1.1.1.37) was assayed by measuring the decrease in absorbance at 340 nm due to NADH oxidation (
NAD+=6.3 mM–1 cm–1) with oxaloacetate. The assay contained 50 mM triethanolamine.HCl (pH 7.4), 5 mM EDTA, 0.12 mM oxaloacetate (pH 7.0), 0.15 mM NADH, and was started by addition of protein (Englard, 1969
). Fumarate hydratase (EC 4.2.1.2) was assayed under aerobic conditions as described by Genda et al. (2006)
in 100 mM phosphate buffer (pH 7.6), 50 mM malate and protein to start the reaction. The absorbance change at 250 nm (
=1.45 mM–1 cm–1) was monitored for 10 min. Succinate dehydrogenase (EC 1.3.99.1) was assayed using 3.8 mM dichlorophenolindophenol (
=34.2 mM–1 cm–1 at 600 nm), 50 mM phenazine methosulfate, 20 mM KCN, in 100 mM potassium phosphate buffer (pH 7.4), and protein (Singer & Kearney, 1963
). Sodium succinate (200 mM) was added to start the reaction and the absorbance at 600 nm monitored for 10 min at 37 °C.
(c) Cytosolic enzymes.
Assays for this group of enzymes used 40 µg of T. vaginalis protein obtained as described by Lindmark & Müller (1973)
, as a positive control. Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) was assayed by measuring the change in absorption at 340 nm due to the reduction of 0.5 mM NAD+ (
=6.3 mM–1 cm–1) with 0.1 mM glyceraldehyde 3-phosphate in 0.14 mM phosphate buffer (pH 7.6) (Duggleby & Dennis, 1974
). Lactate dehydrogenase (EC 1.1.1.27) was assayed as described by Yarlett et al. (1986)
using 25 mM phosphate buffer (pH 7.4), 0.1 mM NADH (
=6.3 mM–1 cm–1), 0.5 mM pyruvate (pH 7.0). The absorbance change at 340 nm was monitored for 10 min. Phosphoenolpyruvate carboxykinase (PEPCK; EC 4.1.1.32) activity was determined under aerobic conditions by the method of Fukuda et al. (2004)
using 50 mM NaHCO3, 5 mM MnCl2, 10 mM phosphoenolpyruvate (PEP), and 2 mM GDP in 100 mM imidazole buffer (pH 7.2). The reaction was started by addition of protein and incubated at 37 °C for 30 min, stopped by addition of 50 mM EDTA and cooled to 4 °C. The oxaloacetate formed was determined by measuring the absorbance change at 340 nm due to the addition of 0.2 mM NADH (
=6.3 mM–1 cm–1) and 3 units of yeast malate dehydrogenase in 100 mM imidazole buffer (pH 7.2). Pyruvate kinase (EC 2.7.1.40) was assayed under aerobic conditions by measuring the ATP produced from ADP (0.1 mM) in 80 mM triethanolamine buffer (pH 7.5) containing 1.3 mM EDTA, 2.0 mM MgSO4 and 1.0 mM PEP. Protein was added to start the reaction and the ATP formed after 15 min was quantified using a luminometer and 0.1 mg firefly luciferase (Boyer, 1962
).
(d) Enzymes characteristic of lysosomes.
Assays for this group of enzymes used 30 µg rat liver homogenate (Fansler & Lowenstein, 1969
) as a positive control.
-Galactosidase (EC 3.2.1.22) was assayed under aerobic conditions by measuring the hydrolysis of 0.1 mg o-nitrophenyl
-D-galactopyranoside (
for p-nitrophenol at 400 nm=17.5 mM–1 cm–1) in 0.1 M acetate buffer (pH 4.5) and protein for 10 min at 37 °C. The reaction was stopped using 1 ml 1 M borate (pH 10) and the absorbance at 420 nm recorded (Borooah et al., 1961
).
-Mannosidase (EC 3.2.1.24) was determined under aerobic conditions using a fluorescent assay containing 10 mM 4-methylumbelliferyl
-D-mannopyranoside in 25 mM sodium acetate (pH 4.0) and protein for 10 min at 37 °C. The assay was stopped with 2 ml 0.25 M glycine/KOH (pH 10.3) and the fluorescence determined using an excitation wavelength of 355 nm and an emission wavelength of 460 nm and compared to a 4-methylumbelliferone standard (Prence & Natowicz, 1992
).
Protein determination.
Protein was determined by the Lowry method.
| RESULTS |
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-ketoglutarate dehydrogenase (EC 1.2.4.2), STK (EC 6.2.1.5), fumarate hydratase (EC 4.2.1.2) (Table 1
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-ketoglutarate dehydrogenase, isocitrate dehydrogenase and aconitase localized to the large granular fraction (Fig. 2A–G
-Galactosidase and
-mannosidase activity were detected in the small granular fraction which is typical of lysosomes (Fig. 2M, N
-ketoglutarate dehydrogenase, isocitrate dehydrogenase and aconitase localized to a band having a density of 1.20 g ml–1 (Fig. 3A
-galactosidase and
-mannosidase resulted in these enzymes localizing to a band having a density of 1.16 g ml–1 (Fig. 3B
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| DISCUSSION |
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The presence of ASCT and STK results in the formation of acetate and ATP. In addition, an incomplete Krebs cycle was detected that results in the formation of succinyl-CoA. The proposed metabolic pathway (Fig. 1
) retains key features of typical mitochondria and hydrogenosomes that couple the energy of the thioester bond of CoA to the generation of ATP. The inability to detect Krebs cycle enzymes in earlier seminal studies of Blastocystis by C. H. Zierdt (Zierdt, 1986
; Zierdt et al., 1988
) that paved the way for these and other studies of this parasite may be due to oxygen inactivation of enzymes involved in the pathway during processing of homogenates.
In common with other anaerobic protists (Lindmark et al., 1989
), the fumarate hydratase of Blastocystis is of low activity and localized solely in the cytosol. There are two distinct classes of fumarate hydratase. Class I enzymes are of
-proteobacterial origin and include fumA and fumB; these are homodimeric, thermolabile, iron–sulfur enzymes with a molecular mass of 120 kDa (Woods et al., 1988
; Gerbod et al., 2001
). Class II enzymes are of archaeal origin (fumC) and are homotetrameric, thermostable, iron-independent enzymes with a molecular mass of 200 kDa (Colombo et al., 1994
; Gerbod et al., 2001
). They are both present in eukaryotic cells, but are differentially localized with class I fumarate hydratase present in the mitochondria (Woods et al., 1988
), whereas class II enzymes are localized in the cytosol (Suzuki et al., 1989
). It is unknown what type of fumarate hydratase is present in Blastocystis, but a search of the Blastocystis database (http://pepdbpub.bcm.umontreal.ca/pathway//BH/server.html) reveals the presence of several genes with homology to both class I fumarate hydratases (accession numbers BHL00001095, BHL00001685, BHL00001701) and class II fumarate hydratases (accession numbers BHL00001811, BHL00001165). The Trichomonas fetus fumarate hydratase has been shown to be of the class II type, leading to the suggestion that they have a different origin from those of mitochondria-containing cells (Gerbod et al., 2001
).
The transformation of energy-rich substrates such as glucose to metabolic end products involves multiple steps that can vary considerably between different organisms. However, there are certain key points that are common to all, such as the steps involving electron transfer and the conservation of high-energy bonds for the ultimate formation of ATP. To this end a significant metabolic feature of the proposed pathway in the Blastocystis MLO is the transformation of pyruvate to acetate and the conservation of the high-energy thioester bond to form ATP. In common with trichomonad and Neocallimastix hydrogenosomes (Steinbuchel & Müller, 1986
; Yarlett et al., 1986
), and mitochondria from the promastigote Leishmania mexicana, Leishmania infantum, Phytomonas sp. and procyclic Trypanaosoma brucei, as well as the parasitic helminth Fasciola hepatica (Van Hellemond et al., 1998
), Blastocystis utilizes a two-step mechanism that couples succinate : succinyl CoA cycling with acetate formation to conserve the energy of the thioester bond to drive subcellular ATP formation (Fig. 1
). This finding is consistent with the proposed common origin of hydrogenosomes and mitochondria (Martin, 1999
). The absence of detectable succinate dehydrogenase activity suggests that the primary function of the partial Krebs cycle in Blastocystis is to provide precursors for the synthesis of amino acids or acetyl-CoA for fatty acid biosynthesis as occurs in E. gracilis (Hoffmeister et al., 2005
). The presence of a partial Krebs cycle has been reported in the mitochondria from procyclic Trypanosoma brucei (Van Hellemond et al., 2005
; van Weelden et al., 2005
), which is proposed to function to export acetyl-CoA to the cytoplasm for fatty acid biosynthesis. The enzyme transferring the CoA moiety from acetyl-CoA to succinate in T. vaginalis hydrogenosomes is ASCT, which has been identified in the T. vaginalis genome (van Grinsven et al., 2008
). The enzyme has high similarity to Saccharomyces cerevisiae acetyl-CoA hydrolase and Clostridium kluyveri succinyl-CoA : CoA-transferase (van Grinsven et al., 2008
). A BLAST search (http://tbestdb.bcm.umontreal.ca/searches/login.php) of the Blastocystis database using the ASCT sequence from T. vaginalis G3 (EST DS113258) reveals the presence of a protein with 78 % identity (BHL 00000444) to the T. vaginalis protein.
The adaptability of the mitochondrion is evident from the literature and we therefore conclude that, despite the lack of cytochromes or other identifiable electron-transport proteins, the organelle from Blastocystis, which is characterized as a DNA-containing, double-membrane-bound structure with a partial Krebs cycle and an active ATP-generating metabolism, is best described as an MLO.
| ACKNOWLEDGEMENTS |
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Edited by: J. Tachezy
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Received 22 February 2008;
revised 10 April 2008;
accepted 14 April 2008.
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