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1 Department of Dental Pathology, Operative Dentistry and Endodontics, School of Dentistry, Aarhus University, Vennelyst Boulevard 9, 8000 Aarhus C, Denmark
2 Stereology and Electron Microscopy Research Laboratory and MIND Center, Aarhus University, Ole Worms Allé 8, 8000 Aarhus C, Denmark
3 Department of Medical Microbiology and Immunology, Aarhus University, Wilhelm Meyers Allé 4, 8000 Aarhus C, Denmark
Correspondence
Irene Dige
idige{at}odont.au.dk
| ABSTRACT |
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A supplementary figure is available with the online version of this paper.
| INTRODUCTION |
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Previous studies of dental biofilm that took advantage of these methods mainly focused on streptococci (Diaz et al., 2006
; Dige et al., 2007
; Hannig et al., 2007
; Palmer et al., 2003
) because culture-based studies suggested that this group of bacteria is prominent during the initial stages of biofilm formation on teeth (Li et al., 2004
; Nyvad & Kilian, 1987
, 1990
). However, other genera such as Actinomyces are also among the earliest colonizers of dental surfaces and may constitute up to 27 % of the pioneer bacteria (Kilian et al., 1979
; Li et al., 2004
; Nyvad & Kilian, 1987
). Several culture-based studies indicated that Actinomyces species gain increased prominence at the expense of streptococci during maturation of the biofilm (Ritz, 1967
; Socransky et al., 1977
; Syed & Loesche, 1978
; van Palenstein Helderman, 1981
). Such population changes might reflect differences in growth rates (Nyvad & Kilian, 1987
; Socransky et al., 1977
) and/or differences in nutritional profiles of these genera (Takahashi et al., 1995
; Takahashi & Yamada, 1996
; van der Hoeven & van den Kieboom, 1990
; Yaling et al., 2006
). However, the spatial relationship of actinomycetes with other members of the dental biofilm microbiota was not disclosed by these culture-based studies.
Previous transmission electron microscopic studies consistently showed the presence of densely packed colonies of pleomorphic Gram-positive bacteria resembling Actinomyces in contact with the tooth surface in young and mature supragingival plaque (Listgarten et al., 1975
; Nyvad & Kilian, 1987
; Schroeder & De Boever, 1970
), and similar morphotypes were observed in the demineralized dentine of root surface caries (Nyvad & Fejerskov, 1989
). Due to methodological limitations it was not possible at that time to verify the identity of these bacteria. In a recent study using combined CLSM and FISH analysis Actinomyces naeslundii constituted up to 18 % of the microbiota within the first days of dental biofilm formation, with a notable decrease over the 7 day observation period (Al-Ahmad et al., 2007
). Direct imaging of A. naeslundii during sequential stages of the initial colonization of hard dental surfaces is still lacking. Such information is important for understanding the role of A. naeslundii during initial biofilm development as well as its ecological role in dental disease processes.
The aims of this study were therefore to describe the pattern of colonization and to analyse population dynamics of A. naeslundii compared to that of streptococci and other bacteria, during the initial 6–48 h of dental biofilm formation.
| METHODS |
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Specimen preparation
FISH.
Following in situ biofilm growth, FISH was performed as described by Dige et al. (2007)
, using specific 16S rRNA probes against streptococci, A. naeslundii and all bacteria. Immediately after removal from the oral cavity, the glass slabs with the biofilms were fixed in 4 % paraformaldehyde (3 vols) in PBS (1 vol.) (Stahl & Amann, 1991
) for 3 h at 4 °C. The specimens were subsequently washed with sterile PBS and stored in a mixture of 100 % ethanol and PBS (1 : 1) at –20 °C. For permeabilization, the glass slabs with the biofilm were mounted on diagnostic glass microscope slides (Menzel) with paraffin wax (GC Corporation) and treated with 25 µl lysozyme (Sigma) [70 U µl–1 in 100 mM Tris/HCl pH 7.5 (Sigma), 5 mM EDTA (Merck)] for 9 min at 37 °C in a humid chamber. The diagnostic glass microscope slides with the biofilms were then rinsed with ultrafiltrated water, dehydrated in series of ethanol washes (50, 80 and 100 %; 3 min each wash) and dried for 10 min in a vertical position. The glass slabs were then exposed to 10 µl hybridization buffer (0.9 M NaCl, 20 mM Tris/HCl pH 7.5, 0.01 % SDS, 30 % formamide, which pilot studies showed to be the optimal concentration for the probe/label combination used) containing 100 ng of the designated oligonucleotide probe and incubated at 46 °C for 2 h in a humid atmosphere in the dark. After hybridization, the glass microscope slides were first washed in buffer (20 mM Tris/HCl pH 7.5, 5 mM EDTA, 0.01 % SDS and 112 mM NaCl) for 15 min in a water bath at 48 °C, and then rinsed in ice-cold ultrafiltrated water. The oligonucleotide probe STR405 (5'-TAG CCG TCC CTT TCT GGT-3') (MWG Biotech) labelled with Alexa488 was used to identify all Streptococcus spp. (Paster et al., 1998
) and the oligonucleotide probe ACT476 (5'-ATC CAG CTA CCG TCA ACC-3') (IBA) labelled with Atto550 was used to identify A. naeslundii (Gmür & Lüthi-Schaller, 2007
). The oligonucleotide probe EUB338 (5'-GCT GCC TCC CGT AGG AGT-3') (IBA) labelled with Atto633 was used as a positive control based on its ability to detect all bacteria (Amann et al., 1990
) with a few exceptions such as Treponema maltophilum and Treponema lecithinolyticum (Daims et al., 1999
), which are not involved in the early phase of biofilm formation. A search performed in the Ribosomal Database Project II at http://rdp.cme.msu.edu/index.jsp indicated that the probe EUB338 recognizes 241 803 out of 335 830 bacterial sequences in the database, including all taxa of bacteria hitherto detected in the oral cavity.
Using the above protocol the specificity of the probes used in the study was tested on smears of saline suspensions of the following strains obtained from the National Collection of Type Cultures (NCTC), Colindale, London, UK; the American Type Culture Collection (ATCC), Manassas, VA, USA; and the Culture Collection of the University of Gothenburg (CCUG), Gothenburg, Sweden: Streptococcus mutans NCTC 10449T, Streptococcus sanguinis ATCC 10556T, Streptococcus gordonii ATCC 10558T, Streptococcus oralis NCTC 7864T, Streptococcus mitis NCTC 12261T, Streptococcus infantis GTC849T, Streptococcus anginosus NCTC 10713T, Streptococcus constellatus ATCC 27823T, Streptococcus intermedius ATCC 27335T, Streptococcus salivarius NCTC 8618T, Streptococcus parasanguinis CCUG 27742, Streptococcus cristatus SK231, Streptococcus pseudopneumoniae SK674, Streptococcus pneumoniae TIGR4, Streptococcus sinensis CCUG 48488T, Streptococcus pyogenes clinical isolate, Abiotrophia defectiva SK892, Gemella haemolysans CCUG 37985T, Globicatella adiacens SK932, Enterococcus faecalis clinical isolate, Lactobacillus acidophilus ATCC 4504, Actinomyces bowdenii CCUG 37421T (cat), Actinomyces cardiffensis CCUG 44997T, Actinomyces funkei CCUG 42773T, Actinomyces georgiae CCUG 32935T, Actinomyces gerencseriae CCUG 34703T, Actinomyces graevenitzii CCUG 27294T, Actinomyces dentalis CCUG 48064T, Actinomyces denticolens CCUG 32758T (cattle), Actinomyces israelii NCTC 6826T, Actinomyces massiliensis CCUG 53522T, Actinomyces meyeri CCUG 21024T, Actinomyces naeslundii ATCC 12104T, A. naeslundii genomospecies 2 WVU627/75, Actinomyces odontolyticus NCTC 9935 and CCUG 20536T, Actinomyces oricola CCUG 46090T, Actinomyces radingae CCUG 34270T, Actinomyces viscosus CCUG 14476T (rat), Propionibacterium acnes ATCC 737, Rothia dentocariosa ATCC 14189T, Bifidobacterium bifidum ATCC 15696T, Staphylococcus aureus clinical isolate, Staphylococcus epidermidis clinical isolate and Veillonella parvula clinical isolate. Except where indicated, these species are all associated with humans. The probe STR405 gave a strong fluorescent reaction with all bacteria in the slides prepared with all Streptococcus species. Apart from a very weak staining of Abiotrophia defectiva, easily distinguishable from the positive reactions seen with Streptococcus species, no other strain gave a positive reaction. The probe ACT476 gave a strong reaction with all bacteria in smears of Actinomyces naeslundii, including A. naeslundii genomospecies 2, A. bowdenii, A. viscosus and A. denticolens, but no reaction with other Actinomyces species or with other bacteria in the test panel. This is in agreement with the complete conservation of the target sequence in the positive species and single to multiple sequence deviations in the negative species (Fig. 1
). Based on these observations it was concluded that probe ACT476 reacts only with A. naeslundii among species that are associated with humans. The DAPI reagent stained all bacteria in the panel.
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Image analysis.
Image analysis was performed using ImageJ 1.34s (Abramoff & Viergever, 2002
; Rasband, 1997–2006). ImageJ was used to adjust output levels within the individual channels of the 24-bit RGB merged images. Prior to merging, the images for each colour channel were assembled into image stacks. In the merged images, streptococci, A. naeslundii and remaining bacteria were represented by green (yellow), blue (purple) and red colours, respectively. No other manipulation of the images was performed. For illustration purposes, maximum projection images of the entire confocal image stack were made for some 6 h, 12 h and 24 h specimens to compensate for the glass surfaces not being oriented completely parallel to the optical section plane.
Stereological analysis
Systematic uniformly random sampling.
Stereological analysis was performed as a systematic uniformly random sampling of fields of view (Gundersen & Jensen, 1987
) as previously described by Dige et al. (2009)
. First, the area of interest for estimating the number of bacteria present was identified as a 2x2 mm2 quadrant in the centre of each glass slab in order to capture typical smooth surface biofilm. Subsequently, based on a visual inspection of the density of bacteria, four or eight systematic uniformly random sampling fields were chosen. The first field of view was sampled using a random number table. From this random starting point within the area of interest, the remaining three or seven fields of view were sampled by moving the microscope stage with a fixed x and y distance from the previous field (in this case 1000 µm in the x-axis and 500 or 1000 in the y-axis, depending on whether four or eight sampling fields were chosen). The principle of counting has been previously described (Dige et al., 2009
).
Quantification of bacteria.
The number Q– of bacteria was counted using the unbiased counting frame originally described by Gundersen (1977)
and applied to bacteria, as described by Dige et al. (2009)
. The unbiased counting frame was superimposed on the images and fixed in the same position throughout subsequent focal planes. Bacteria were only counted the first time they came into focus in a section. Bacteria were counted manually, and to remember which bacteria had already been counted, the point picker in the Particle Analysis plugin in the ImageJ software was used. The software also maintained a record of the number of cell markers placed by the operator. Because of the pleomorphic morphology of ACT476-labelled bacteria the following counting rules were adopted: (i) for overlapping bacteria (intense fluorescence) the bacteria were counted as separate bacteria; (ii) when a space or a notch was observed, bacteria were counted as separate bacteria; (iii) bacteria showing a change in angle were counted as separate bacteria (Fig. 2
). ACT476-labelled bacteria were counted on images of the blue channel only (with the other channels off), because of better differentiation when they were not intermingled with other types of bacteria (compare Fig. 4g and h
). The principle for counting streptococci in division was to count them as two bacteria when the length was equal to that of two separate cocci.
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The raw counts of streptococci, A. naeslundii and remaining bacteria were used to estimate the total bacterial number within the area of interest (2x2 mm2). Subsequently, the total number of bacteria for each glass slab, N, was estimated by the 2D fractionator (Dige et al., 2009
; Gundersen, 1986
). For each volunteer two glass slabs were analysed at each time point and the mean value of the estimates was calculated.
Statistics.
For each bacterial group the number of bacteria was plotted as a function of time on log-linear and log-log scales and evaluated for linear behaviour, signifying single-exponential or nonlinear growth, respectively.
The total variation between individuals (CVtot) was determined, as regards the number of streptococci, the number of A. naeslundii and the total number of bacteria. The error variance due to the stereological method (CEmet) was estimated as the counting noise (Nyengaard, 1999
), disregarding the error variance due to systematic sampling of sections and fields of view. The observed total variation [CVtot=standard deviation (SD) divided by the mean] was calculated. From the CVtot and the CEmet, the biological variation, CVbio, was determined using the equation
. Because the error variance due to the stereological method (CEmet) was very small (Dige et al., 2009
) the total variation between individuals (CVtot) in the number of bacteria, as regards streptococci, A. naeslundi and total bacteria, was determined mainly by the biological variation (CVbio). Calculation of the ratios of CE2/
gave very small values, suggesting that a sufficient number of bacteria was counted (Nyengaard, 1999
).
| RESULTS |
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At 24 h and 48 h, the biofilm showed dominance of streptococci (Figs 4f, g
and 5b
). Three individuals, in addition, showed large accumulations of non-streptococci (Fig. 5a
), including A. naeslundii and large coccoid non-streptococci in pairs or tetrads. Eight of the ten individuals showed A. naeslundii arranged in microcolonies of varying size consisting of branching filaments, some of which were spider colonies consisting of branching filaments radiating from a single point (Fig. 4f, g, h
). A. naeslundii was also observed intermingling with streptococci and other non-streptococci in most individuals (Fig. 4f, g
). Also at these more advanced stages of biofilm formation the pattern and degree of microbial coverage, as well as the thickness of the biofilm, varied within and between individuals from incomplete (Fig. 4f
) to complete surface coverage by bacteria (Fig. 4g
), in some parts with prominences (chimneys) of multilayered complex microcolonies (Figs 5
and 6
). All types of bacteria showed various stages of cell division reflected by their pair-wise (Fig. 4f
) or branching arrangement (Fig. 4f, h
).
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Analysis of consecutive sections of the multilayered biofilm parallel to the surface showed that A. naeslundii predominantly colonized the inner part next to the glass surface, and was more sparsely distributed in the outer layers (Fig. 5
). Some A. naeslundii microcolonies extended perpendicularly from the supporting surface surrounded by other bacteria and forming chimney structures. Sagittal (x-z, y-z) sections confirmed the presence of A. naeslundii in the inner layers as individual pleomorphic bacteria were oriented at different angles to the surface and forming palisades (Fig. 6
).
| DISCUSSION |
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A. naeslundii was often observed in mixed clusters with streptococci and other bacteria at 6 and 12 h. This observation supports the view that co-adhesion, in particular co-adhesion processes involving A. naeslundii, streptococci and other bacteria, play an important role during the initial stages of colonization of tooth surfaces (Bos et al., 1996
; Gibbons & Nygaard, 1970
; Kolenbrander, 1988
; Kolenbrander et al., 1990
; Palmer et al., 2003
; Yoshida et al., 2006
). This observation is further supported by the finding of genotypically different bacteria co-localizing at the outer surface of the biofilm, indicating that co-adhesion of bacteria from saliva is a continuing process adding to the biomass of the developing biofilm. However, it is conceivable that cell division is the major contributor to the rapid increase in biomass during the first 24–48 h of biofilm formation, as suggested by several reports (Bloomquist et al., 1996
; Skopek et al., 1993
; Ørstavik, 1984
). This is in line with the results of the present study, in which many bacteria appeared in a stage of cell division, including A. naeslundii, which formed branching filaments or spider colonies. Likewise, it is conceivable that the decrease in the relative proportion of A. naeslundii between 6 and 48 h of biofilm formation observed in this and previous studies (Al-Ahmad et al., 2007
; Li et al., 2004
) reflects the effect of cell division and is a direct result of slower cell division of A. naeslundii relative to streptococci and other members of the microbiota. Similar shifts in the relative composition of the microbiota have been recorded during biofilm formation in experimental rats (Beckers & van der Hoeven, 1984
).
The observation of densely packed colonies of A. naeslundii in the innermost part of the biofilm adjacent to the supporting surface has interesting ecological implications. In contrast to streptococci, A. naeslundii has a unique glycolytic system in which the bacteria use phosphoryl donors instead of ATP for carbohydrate degradation (Takahashi et al., 1995
). Actinomyces species can use lactate as a carbon source for growth (Takahashi & Yamada, 1996
; van der Hoeven & van den Kieboom, 1990
), whereby lactic acid is converted into weaker acids (Takahashi & Yamada, 1996
). A pH-modulating activity of these species may, theoretically, occur also via degradation of urea (Yaling et al., 2006
). Moreover, through its metabolism, Actinomyces species can remove oxygen from the environment and create an anaerobic milieu (Takahashi & Yamada, 1996
), suitable for outgrowth of some other bacteria. Finally, recent observations demonstrate that co-aggregation with A. naeslundii stabilizes arginine metabolism in Streptococcus gordonii and reduces its dependence on extracellular arginine, which is a limiting factor in the environment of the early colonizers (Jakubovics et al., 2008
; Van Wuyckhuyse et al., 1995
). Collectively, these properties make A. naeslundii an essential initial colonizer of tooth surfaces and particularly well adapted to live and survive in substrate-limited environments deep in the biofilm. The concerted metabolic activities of these bacteria may have a controlling effect on dental caries processes by reducing the acidogenic potential of the biofilm (Takahashi & Nyvad, 2008
).
With increasing age of the biofilm, microcolonies of A. naeslundii and other non-streptococci were seen to extend perpendicularly from the supporting surface as chimney structures and palisades like those observed by electron microscopy of multi-layered dental plaque (Listgarten et al., 1975
; Nyvad & Fejerskov, 1987b
; Rosan et al., 1976
). The morphogenesis of these particular structures can only be speculated on. It may reflect a constrained physical environment during development of the biofilm whereby overgrowth of rapidly multiplying species may hinder the growth of other bacteria with a lower growth rate such as Actinomyces species. Alternatively or additionally, such structures may result from nutritional interrelationships between different microbial species or specific co-adhesion/co-aggregation processes. Thus, Bos et al. (1996)
proposed that streptococci may encapsulate Actinomyces to form micro-anaerobic domains in the biofilm, which are needed for optimal growth of the Actinomyces. This hypothesis corroborates more recent concepts of bacterial multicellularity that bacteria growing in biofilm communities have communication and decision-making capabilities that enable them to coordinate growth and biochemical activities (Jakubovics et al., 2008
; for reviews see Kolenbrander et al., 2006
; Shapiro, 1998
). Hence, it has been suggested that the growth rate of adherent cells is enhanced when a certain cell density is reached, whereas the growth rate drops at higher densities. This density-dependent growth may be explained by cell–cell signalling, resulting in physical or morphological changes of the biofilm bacteria (Bloomquist et al., 1996
).
In this study, A. naeslundii represented a large spectrum of morphotypes, ranging from coccoid to small rods and filamentous bacteria. It has been suggested previously that A. naeslundii exhibits pleomorphism, the coccoid form predominating during the early stages, whereas rod-shaped or filamentous forms become prominent after 24–48 h (Nyvad & Fejerskov, 1987b
). This observation is consistent with our study (compare Fig. 4b
with Fig. 4f, h
) as well as immunoelectron microscopic studies of dental plaque in situ, in which A. viscosus (A. naeslundii according to present nomenclature) tended to be cocco-bacillary in the superficial layers and filamentous in the deeper layers (Berthold et al., 1982
).
The observation of sparsely colonized areas in the centre of the circular projections and deeper parts of multilayered biofilms (Fig. 5
) is open for speculation. Such unstained regions have been suggested to represent open voids (Pratten et al., 2000
; Wood et al., 2000
) or to contain extracellular polysaccharides (Thurnheer et al., 2004
). However, one cannot exclude the possibility that these areas contain bacteria labelled with dyes that are bleached away by out-of-focus excitation during the consecutive scanning through the biofilm, or bacteria exhibiting insufficient fluorescent signals because of low rRNA content due to slow growth or low metabolic state (Amann et al., 1995
; Hannig et al., 2007
; Moter & Göbel, 2000
; Schuppler et al., 1998
). In fact, in some instances we found the fluorescent signal of the ACT476 probe to be bright, whereas the signal of the EUB338 probe of the same bacteria was very low or absent. Of particular relevance to our stereological approach, it has been previously observed that the in situ hybridization of Gram-positive filamentous bacteria such as Actinomyces often results in an irregular distribution of fluorescent signals over the whole filaments (Schuppler et al., 1998
), possibly because of insufficient permeability of the bacterial cell walls, which has been documented also for actinomycetes in other ecosystems (Müller et al., 2007
; Schuppler et al., 1998
). Consequently underestimation of the number of some bacteria cannot be excluded (Dige et al., 2009
).
In conclusion, by combining qualitative and quantitative methods this study resulted in new insight into the temporo-spatial relationships as well as the population dynamics of A. naeslundii relative to streptococci in the initial phases of biofilm formation on oral solid non-shedding surfaces. A remarkable observation of the study was the preferential colonization of A. naeslundii in the deeper regions of the biofilm. In view of the pH-modulating properties of A. naeslundii it is relevant to further explore the ecological role of this species in the processes of dental caries.
| ACKNOWLEDGEMENTS |
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Edited by: P. Kolenbrander
| REFERENCES |
|---|
|
|
|---|
Al-Ahmad, A., Wunder, A., Auschill, T. M., Follo, M., Braun, G., Hellwig, E. & Arweiler, N. B. (2007). The in vivo dynamics of Streptococcus spp., Actinomyces naeslundii, Fusobacterium nucleatum and Veillonella spp. in dental plaque biofilm as analysed by five-colour multiplex fluorescence in situ hybridization. J Med Microbiol 56, 681–687.
Amann, R. I., Binder, B. J., Olson, R. J., Chisholm, S. W., Devereux, R. & Stahl, D. A. (1990). Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl Environ Microbiol 56, 1919–1925.
Amann, R. I., Ludwig, W. & Schleifer, K. H. (1995). Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59, 143–169.
Anwar, H., Strap, J. L. & Costerton, J. W. (1992). Establishment of aging biofilms: possible mechanism of bacterial resistance to antimicrobial therapy. Antimicrob Agents Chemother 36, 1347–1351.
Auschill, T. M., Hellwig, E., Sculean, A., Hein, N. & Arweiler, N. B. (2004). Impact of the intraoral location on the rate of biofilm growth. Clin Oral Investig 8, 97–101.[Medline]
Beckers, H. J. & van der Hoeven, J. S. (1984). The effects of mutual interaction and host diet on the growth rates of the bacteria Actinomyces viscosus and Streptococcus mutans during colonization of tooth surfaces in di-associated gnotobiotic rats. Arch Oral Biol 29, 231–236.[CrossRef][Medline]
Berthold, P., Lai, C. H. & Listgarten, M. A. (1982). Immunoelectron microscopic studies of Actinomyces viscosus. J Periodontal Res 17, 26–40.[CrossRef][Medline]
Bloomquist, C. G., Reilly, B. E. & Liljemark, W. F. (1996). Adherence, accumulation, and cell division of a natural adherent bacterial population. J Bacteriol 178, 1172–1177.
Bos, R., van der Mei, H. C. & Busscher, H. J. (1996). Co-adhesion of oral microbial pairs under flow in the presence of saliva and lactose. J Dent Res 75, 809–815.
Costerton, J. W., Cook, G. & Lamont, R. (1999). The community architecture of biofilms: dynamic structures and mechanisms. In Dental Plaque Revisited. Oral Biofilms in Health and Disease, pp. 5–14. Edited by H. N. Newman & M. Wilson. Cardiff, UK: Bioline.
Daims, H., Bruhl, A., Amann, R., Schleifer, K. H. & Wagner, M. (1999). The domain-specific probe EUB338 is insufficient for the detection of all bacteria: development and evaluation of a more comprehensive probe set. Syst Appl Microbiol 22, 434–444.[Medline]
Davies, D. (2003). Understanding biofilm resistance to antibacterial agents. Nat Rev Drug Discov 2, 114–122.[CrossRef][Medline]
Diaz, P. I., Chalmers, N. I., Rickard, A. H., Kong, C., Milburn, C. L., Palmer, R. J., Jr & Kolenbrander, P. E. (2006). Molecular characterization of subject-specific oral microflora during initial colonization of enamel. Appl Environ Microbiol 72, 2837–2848.
Dige, I., Nilsson, H., Kilian, M. & Nyvad, B. (2007). In situ identification of streptococci and other bacteria in initial dental biofilm by confocal laser scanning microscopy and fluorescence in situ hybridization. Eur J Oral Sci 115, 459–467.[CrossRef][Medline]
Dige, I., Nyengaard, J. R., Kilian, M. & Nyvad, B. (2009). Application of stereological principles for quantification of bacteria in intact dental biofilms. Oral Microbiol Immunol 24, 69–75.[CrossRef][Medline]
DuPont, G. A. (1997). Understanding dental plaque; biofilm dynamics. J Vet Dent 14, 91–94.[Medline]
Gibbons, R. J. & Nygaard, M. (1970). Interbacterial aggregation of plaque bacteria. Arch Oral Biol 15, 1397–1400.[CrossRef][Medline]
Gmür, R. & Lüthi-Schaller, H. (2007). A combined immunofluorescence and fluorescent in situ hybridization assay for single cell analyses of dental plaque microorganisms. J Microbiol Methods 69, 402–405.[CrossRef][Medline]
Gundersen, H. J. (1977). Notes on the estimation of the numerical density of arbitrary profiles: the edge effect. J Microsc 111, 219–223.
Gundersen, H. J. (1986). Stereology of arbitrary particles. A review of unbiased number and size estimators and the presentation of some new ones, in memory of William R. Thompson. J Microsc 143, 3–45.[Medline]
Gundersen, H. J. & Jensen, E. B. (1987). The efficiency of systematic sampling in stereology and its prediction. J Microsc 147, 229–263.[Medline]
Gundersen, H. J., Jensen, E. B., Kieu, K. & Nielsen, J. (1999). The efficiency of systematic sampling in stereology – reconsidered. J Microsc 193, 199–211.[Medline]
Haffajee, A. D., Socransky, S. S., Patel, M. R. & Song, X. (2008). Microbial complexes in supragingival plaque. Oral Microbiol Immunol 23, 196–205.[CrossRef][Medline]
Hannig, C., Hannig, M., Rehmer, O., Braun, G., Hellwig, E. & Al-Ahmad, A. (2007). Fluorescence microscopic visualization and quantification of initial bacterial colonization on enamel in situ. Arch Oral Biol 52, 1048–1056.[CrossRef][Medline]
Jakubovics, N. S., Gill, S. R., Iobst, S. E., Vickerman, M. M. & Kolenbrander, P. E. (2008). Regulation of gene expression in a mixed-genus community: stabilized arginine biosynthesis in Streptococcus gordonii by coaggregation with Actinomyces naeslundii. J Bacteriol 190, 3646–3657.
Kilian, M., Larsen, M. J., Fejerskov, O. & Thylstrup, A. (1979). Effects of fluoride on the initial colonization of teeth in vivo. Caries Res 13, 319–329.[Medline]
Kolenbrander, P. E. (1988). Intergeneric coaggregation among human oral bacteria and ecology of dental plaque. Annu Rev Microbiol 42, 627–656.[CrossRef][Medline]
Kolenbrander, P. E., Andersen, R. N. & Moore, L. V. (1990). Intrageneric coaggregation among strains of human oral bacteria: potential role in primary colonization of the tooth surface. Appl Environ Microbiol 56, 3890–3894.
Kolenbrander, P. E., Palmer, R. J., Jr, Rickard, A. H., Jakubovics, N. S., Chalmers, N. I. & Diaz, P. I. (2006). Bacterial interactions and successions during plaque development. Periodontol 2000 42, 47–79.[CrossRef]
Li, J., Helmerhorst, E. J., Leone, C. W., Troxler, R. F., Yaskell, T., Haffajee, A. D., Socransky, S. S. & Oppenheim, F. G. (2004). Identification of early microbial colonizers in human dental biofilm. J Appl Microbiol 97, 1311–1318.[CrossRef][Medline]
Listgarten, M. A., Mayo, H. E. & Tremblay, R. (1975). Development of dental plaque on epoxy resin crowns in man. A light and electron microscopic study. J Periodontol 46, 10–26.[Medline]
Moter, A. & Göbel, U. B. (2000). Fluorescence in situ hybridization (FISH) for direct visualization of microorganisms. J Microbiol Methods 41, 85–112.[CrossRef][Medline]
Müller, E., Schade, M. & Lemmer, H. (2007). Filamentous scum bacteria in activated sludge plants: detection and identification quality by conventional activated sludge microscopy versus fluorescence in situ hybridization. Water Environ Res 79, 2274–2286.[CrossRef][Medline]
Nyengaard, J. R. (1999). Stereologic methods and their application in kidney research. J Am Soc Nephrol 10, 1100–1123.
Nyvad, B. & Fejerskov, O. (1987a). Scanning electron microscopy of early microbial colonization of human enamel and root surfaces in vivo. Scand J Dent Res 95, 287–296.[Medline]
Nyvad, B. & Fejerskov, O. (1987b). Transmission electron microscopy of early microbial colonization of human enamel and root surfaces in vivo. Scand J Dent Res 95, 297–307.[Medline]
Nyvad, B. & Fejerskov, O. (1989). Structure of dental plaque and the plaque-enamel interface in human experimental caries. Caries Res 23, 151–158.[Medline]
Nyvad, B. & Kilian, M. (1987). Microbiology of the early colonization of human enamel and root surfaces in vivo. Scand J Dent Res 95, 369–380.[Medline]
Nyvad, B. & Kilian, M. (1990). Microflora associated with experimental root surface caries in humans. Infect Immun 58, 1628–1633.
Ørstavik, D. (1984). Initial bacterial adhesion to surfaces: ecological implications in dental plaque formation. In Bacterial Adhesion and Preventive Dentistry, pp. 153–166. Edited by J. M. ten Cate, S. A. Leach & J. Arends. Washington, DC: IRL Press.
Palmer, R. J., Gordon, S. M., Cisar, J. O. & Kolenbrander, P. E. (2003). Coaggregation-mediated interactions of streptococci and actinomyces detected in initial human dental plaque. J Bacteriol 185, 3400–3409.
Paster, B. J., Bartoszyk, I. M. & Dewhirst, F. E. (1998). Identification of oral streptococci using PCR-based, reverse-capture, checkerboard hybridization. Methods Cell Sci 20, 223–231.[CrossRef]
Pratten, J., Andrews, C. S., Craig, D. Q. & Wilson, M. (2000). Structural studies of microcosm dental plaques grown under different nutritional conditions. FEMS Microbiol Lett 189, 215–218.[CrossRef][Medline]
Ramberg, P., Sekino, S., Uzel, N. G., Socransky, S. & Lindhe, J. (2003). Bacterial colonization during de novo plaque formation. J Clin Periodontol 30, 990–995.[CrossRef][Medline]
Rasband, W. S. (1997–2006). ImageJ. US National Institutes of Health, Bethesda, Maryland, USA, http://rsb.info.nih.gov/ij/. 1.34s.
Ritz, H. L. (1967). Microbial population shifts in developing human dental plaque. Arch Oral Biol 12, 1561–1568.[CrossRef][Medline]
Rosan, B., Lai, C. H. & Listgarten, M. A. (1976). Streptococcus sanguis: a model in the application in immunochemical analysis for the in situ localization of bacteria in dental plaque. J Dent Res 55, A124–A141.
Schroeder, H. E. & De Boever, J. A. (1970). The structure of microbial dental plaque. In Dental Plaque, pp. 49–70. Edited by W. D. McHugh. Dundee: C.D. Thomson & Co.
Schuppler, M., Wagner, M., Schön, G. & Göbel, U. B. (1998). In situ identification of nocardioform actinomycetes in activated sludge using fluorescent rRNA-targeted oligonucleotide probes. Microbiology 144, 249–259.
Shapiro, J. A. (1998). Thinking about bacterial populations as multicellular organisms. Annu Rev Microbiol 52, 81–104.[CrossRef][Medline]
Skopek, R. J., Liljemark, W. F., Bloomquist, C. G. & Rudney, J. D. (1993). Dental plaque development on defined streptococcal surfaces. Oral Microbiol Immunol 8, 16–23.[CrossRef][Medline]
Socransky, S. S., Manganiello, A. D., Propas, D., Oram, V. & van Houte, J. (1977). Bacteriological studies of developing supragingival dental plaque. J Periodontal Res 12, 90–106.[CrossRef][Medline]
Stahl, D. A. & Amann, R. (1991). Development and application of nucleic acid probes. In Nucleic Acid Techniques in Bacterial Systematics, 1st edn, pp. 205–248. Edited by E. Stackebrandt & M. Goodfellow. Chichester, UK: Wiley.
Syed, S. A. & Loesche, W. J. (1978). Bacteriology of human experimental gingivitis: effect of plaque age. Infect Immun 21, 821–829.
Takahashi, N. & Nyvad, B. (2008). Caries ecology revisited: microbial dynamics and the caries process. Caries Res 42, 409–418.[CrossRef][Medline]
Takahashi, N. & Yamada, T. (1996). Catabolic pathway for aerobic degradation of lactate by Actinomyces naeslundii. Oral Microbiol Immunol 11, 193–198.[CrossRef][Medline]
Takahashi, N., Kalfas, S. & Yamada, T. (1995). Phosphorylating enzymes involved in glucose fermentation of Actinomyces naeslundii. J Bacteriol 177, 5806–5811.
Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596–1599.
Thurnheer, T., Gmür, R. & Guggenheim, B. (2004). Multiplex FISH analysis of a six-species bacterial biofilm. J Microbiol Methods 56, 37–47.[CrossRef][Medline]
van der Hoeven, J. S. & van den Kieboom, C. W. (1990). Oxygen-dependent lactate utilization by Actinomyces viscosus and Actinomyces naeslundii. Oral Microbiol Immunol 5, 223–225.[CrossRef][Medline]
van Palenstein Helderman, W. H. (1981). Longitudinal microbial changes in developing human supragingival and subgingival dental plague. Arch Oral Biol 26, 7–12.[CrossRef][Medline]
Van Wuyckhuyse, B. C., Perinpanayagam, H. E., Bevacqua, D., Raubertas, R. F., Billings, R. J., Bowen, W. H. & Tabak, L. A. (1995). Association of free arginine and lysine concentrations in human parotid saliva with caries experience. J Dent Res 74, 686–690.
Wood, S. R., Kirkham, J., Marsh, P. D., Shore, R. C., Nattress, B. & Robinson, C. (2000). Architecture of intact natural human plaque biofilms studied by confocal laser scanning microscopy. J Dent Res 79, 21–27.
Yaling, L., Tao, H., Jingyi, Z. & Xuedong, Z. (2006). Characterization of the Actinomyces naeslundii ureolysis and its role in bacterial aciduricity and capacity to modulate pH homeostasis. Microbiol Res 161, 304–310.[CrossRef][Medline]
Yoshida, Y., Palmer, R. J., Yang, J., Kolenbrander, P. E. & Cisar, J. O. (2006). Streptococcal receptor polysaccharides: recognition molecules for oral biofilm formation. BMC Oral Health 6 (Suppl 1), S12[CrossRef][Medline]
Received 4 February 2009;
revised 31 March 2009;
accepted 27 April 2009.
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