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Journal of General Microbiology 111 (1979), 1-61; DOI  10.1099/00221287-111-1-1
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Generic Assignments, Strain Histories and Properties of Pure Cultures of Cyanobacteria

Rosmarie Rippka, Josette Deruelles, John B. Waterbury*, Michael Herdman{dagger} and Roger Y. Stanier

Unité de Physiologie Microbienne, Département de Biochimie et Génétique Microbienne, Institut Pasteur, 28 rue du Docteur ROUX, Paris 75015, France

ABSTRACT

Summary: On the basis of a comparative study of 178 strains of cyanobacteria, representative of this group of prokaryotes, revised definitions of many genera are proposed. Revisions are designed to permit the generic identification of cultures, often difficult through use of the field-based system of phycological classification. The differential characters proposed are both constant and readily determinable in cultured material. The 22 genera recognized are placed in five sections, each distinguished by a particular pattern of structure and development. Generic descriptions are accompanied by strain histories, brief accounts of strain properties, and illustrations; one or more reference strains are proposed for each genus. The collection on which this analysis was based has been deposited in the American Type Culture Collection, where strains will be listed under the generic designations proposed here.


* Present address: Biology Department, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts 02543, U.S.A.

* Present address: Department of Biological Sciences, The University, Dundee DD1 4HN.




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T. Soule, V. Stout, W. D. Swingley, J. C. Meeks, and F. Garcia-Pichel
Molecular Genetics and Genomic Analysis of Scytonemin Biosynthesis in Nostoc punctiforme ATCC 29133
J. Bacteriol., June 15, 2007; 189(12): 4465 - 4472.
[Abstract] [Full Text] [PDF]


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J. Bacteriol.Home page
A. Valladares, I. Maldener, A. M. Muro-Pastor, E. Flores, and A. Herrero
Heterocyst Development and Diazotrophic Metabolism in Terminal Respiratory Oxidase Mutants of the Cyanobacterium Anabaena sp. Strain PCC 7120
J. Bacteriol., June 15, 2007; 189(12): 4425 - 4430.
[Abstract] [Full Text] [PDF]


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Appl. Environ. Microbiol.Home page
N. V. Ivanikova, L. C. Popels, R. M. L. McKay, and G. S. Bullerjahn
Lake Superior Supports Novel Clusters of Cyanobacterial Picoplankton
Appl. Envir. Microbiol., June 15, 2007; 73(12): 4055 - 4065.
[Abstract] [Full Text] [PDF]


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MicrobiologyHome page
E. Rupprecht, S. Gathmann, E. Fuhrmann, and D. Schneider
Three different DnaK proteins are functionally expressed in the cyanobacterium Synechocystis sp. PCC 6803
Microbiology, June 1, 2007; 153(6): 1828 - 1841.
[Abstract] [Full Text] [PDF]


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J. Biol. Chem.Home page
T. M. Stanne, E. Pojidaeva, F. I. Andersson, and A. K. Clarke
Distinctive Types of ATP-dependent Clp Proteases in Cyanobacteria
J. Biol. Chem., May 11, 2007; 282(19): 14394 - 14402.
[Abstract] [Full Text] [PDF]


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Plant Cell PhysiolHome page
W. Zhao, Q. Guo, and J. Zhao
A Membrane-Associated Mn-Superoxide Dismutase Protects the Photosynthetic Apparatus and Nitrogenase from Oxidative Damage in the Cyanobacterium Anabaena sp. PCC 7120
Plant Cell Physiol., April 1, 2007; 48(4): 563 - 572.
[Abstract] [Full Text] [PDF]


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Plant Cell PhysiolHome page
H. Ozaki, M. Ikeuchi, T. Ogawa, H. Fukuzawa, and K. Sonoike
Large-Scale Analysis of Chlorophyll Fluorescence Kinetics in Synechocystis sp. PCC 6803: Identification of the Factors Involved in the Modulation of Photosystem Stoichiometry
Plant Cell Physiol., March 1, 2007; 48(3): 451 - 458.
[Abstract] [Full Text] [PDF]


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Cold Spring Harb Symp Quant BiolHome page
S. S. Golden
Integrating the Circadian Oscillator into the Life of the Cyanobacterial Cell
Cold Spring Harb Symp Quant Biol, January 1, 2007; 72(0): 331 - 338.
[Abstract] [PDF]


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J. Biol. Chem.Home page
K. Promnares, J. Komenda, L. Bumba, J. Nebesarova, F. Vacha, and M. Tichy
Cyanobacterial Small Chlorophyll-binding Protein ScpD (HliB) Is Located on the Periphery of Photosystem II in the Vicinity of PsbH and CP47 Subunits
J. Biol. Chem., October 27, 2006; 281(43): 32705 - 32713.
[Abstract] [Full Text] [PDF]


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Int. J. Syst. Evol. Microbiol.Home page
K. A. Palinska, C. F. Thomasius, J. Marquardt, and S. Golubic
Phylogenetic evaluation of cyanobacteria preserved as historic herbarium exsiccata.
Int J Syst Evol Microbiol, October 1, 2006; 56(Pt 10): 2253 - 2263.
[Abstract] [Full Text] [PDF]


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J. Bacteriol.Home page
E. Olmedo-Verd, A. M. Muro-Pastor, E. Flores, and A. Herrero
Localized Induction of the ntcA Regulatory Gene in Developing Heterocysts of Anabaena sp. Strain PCC 7120.
J. Bacteriol., September 1, 2006; 188(18): 6694 - 6699.
[Abstract] [Full Text] [PDF]


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Genome ResHome page
O. Zhaxybayeva, J. P. Gogarten, R. L. Charlebois, W. F. Doolittle, and R. T. Papke
Phylogenetic analyses of cyanobacterial genomes: Quantification of horizontal gene transfer events
Genome Res., September 1, 2006; 16(9): 1099 - 1108.
[Abstract] [Full Text] [PDF]


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Plant Physiol.Home page
M. Eisenhut, S. Kahlon, D. Hasse, R. Ewald, J. Lieman-Hurwitz, T. Ogawa, W. Ruth, H. Bauwe, A. Kaplan, and M. Hagemann
The Plant-Like C2 Glycolate Cycle and the Bacterial-Like Glycerate Pathway Cooperate in Phosphoglycolate Metabolism in Cyanobacteria
Plant Physiology, September 1, 2006; 142(1): 333 - 342.
[Abstract] [Full Text] [PDF]


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J. Bacteriol.Home page
S. Sakr, M. Thyssen, M. Denis, and C.-C. Zhang
Relationship among Several Key Cell Cycle Events in the Developmental Cyanobacterium Anabaena sp. Strain PCC 7120.
J. Bacteriol., August 1, 2006; 188(16): 5958 - 5965.
[Abstract] [Full Text] [PDF]


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J. Bacteriol.Home page
Y. Cheng, J.-H. Li, L. Shi, L. Wang, A. Latifi, and C.-C. Zhang
A Pair of Iron-Responsive Genes Encoding Protein Kinases with a Ser/Thr Kinase Domain and a His Kinase Domain Are Regulated by NtcA in the Cyanobacterium Anabaena sp. Strain PCC 7120
J. Bacteriol., July 1, 2006; 188(13): 4822 - 4829.
[Abstract] [Full Text] [PDF]


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Proc. Natl. Acad. Sci. USAHome page
A. Tomitani, A. H. Knoll, C. M. Cavanaugh, and T. Ohno
The evolutionary diversification of cyanobacteria: Molecular-phylogenetic and paleontological perspectives
PNAS, April 4, 2006; 103(14): 5442 - 5447.
[Abstract] [Full Text] [PDF]


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J. Bacteriol.Home page
S. Y. Gerdes, O. V. Kurnasov, K. Shatalin, B. Polanuyer, R. Sloutsky, V. Vonstein, R. Overbeek, and A. L. Osterman
Comparative Genomics of NAD Biosynthesis in Cyanobacteria.
J. Bacteriol., April 1, 2006; 188(8): 3012 - 3023.
[Abstract] [Full Text] [PDF]


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Proc. Natl. Acad. Sci. USAHome page
K. C. Giese, E. Basha, B. Y. Catague, and E. Vierling
Evidence for an essential function of the N terminus of a small heat shock protein in vivo, independent of in vitro chaperone activity
PNAS, December 27, 2005; 102(52): 18896 - 18901.
[Abstract] [Full Text] [PDF]


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J. Biol. Chem.Home page
M. Ceballos-Chavez and A. Vioque
Sequence-dependent Cleavage Site Selection by RNase Z from the Cyanobacterium Synechocystis sp. PCC 6803
J. Biol. Chem., September 30, 2005; 280(39): 33461 - 33469.
[Abstract] [Full Text] [PDF]


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Plant Cell PhysiolHome page
S. Ehira, M. Ohmori, and N. Sato
Identification of Low-temperature-regulated ORFs in the Cyanobacterium Anabaena sp. Strain PCC 7120: Distinguishing the Effects of Low Temperature from the Effects of Photosystem II Excitation Pressure
Plant Cell Physiol., August 1, 2005; 46(8): 1237 - 1245.
[Abstract] [Full Text] [PDF]


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J. Biol. Chem.Home page
J. A. Bautista, F. Rappaport, M. Guergova-Kuras, R. O. Cohen, J. H. Golbeck, J. Y. Wang, D. Beal, and B. A. Diner
Biochemical and Biophysical Characterization of Photosystem I from Phytoene Desaturase and {zeta}-Carotene Desaturase Deletion Mutants of Synechocystis Sp. PCC 6803: EVIDENCE FOR PsaA- AND PsaB-SIDE ELECTRON TRANSPORT IN CYANOBACTERIA
J. Biol. Chem., May 20, 2005; 280(20): 20030 - 20041.
[Abstract] [Full Text] [PDF]


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J. Biol. Chem.Home page
E. Spence, S. Bailey, A. Nenninger, S. G. Moller, and C. Robinson
A Homolog of Albino3/OxaI Is Essential for Thylakoid Biogenesis in the Cyanobacterium Synechocystis sp. PCC6803
J. Biol. Chem., December 31, 2004; 279(53): 55792 - 55800.
[Abstract] [Full Text] [PDF]


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J. Biol. Chem.Home page
B. Klinkert, F. Ossenbuhl, M. Sikorski, S. Berry, L. Eichacker, and J. Nickelsen
PratA, a Periplasmic Tetratricopeptide Repeat Protein Involved in Biogenesis of Photosystem II in Synechocystis sp. PCC 6803
J. Biol. Chem., October 22, 2004; 279(43): 44639 - 44644.
[Abstract] [Full Text] [PDF]


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J. Biol. Chem.Home page
K. C. Giese and E. Vierling
Mutants in a Small Heat Shock Protein That Affect the Oligomeric State: ANALYSIS AND ALLELE-SPECIFIC SUPPRESSION
J. Biol. Chem., July 30, 2004; 279(31): 32674 - 32683.
[Abstract] [Full Text] [PDF]


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Proc. Natl. Acad. Sci. USAHome page
X. Huang, Y. Dong, and J. Zhao
HetR homodimer is a DNA-binding protein required for heterocyst differentiation, and the DNA-binding activity is inhibited by PatS
PNAS, April 6, 2004; 101(14): 4848 - 4853.
[Abstract] [Full Text] [PDF]


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J. Biol. Chem.Home page
S. Picossi, A. Valladares, E. Flores, and A. Herrero
Nitrogen-regulated Genes for the Metabolism of Cyanophycin, a Bacterial Nitrogen Reserve Polymer: EXPRESSION AND MUTATIONAL ANALYSIS OF TWO CYANOPHYCIN SYNTHETASE AND CYANOPHYCINASE GENE CLUSTERS IN THE HETEROCYST-FORMING CYANOBACTERIUM ANABAENA SP. PCC 7120
J. Biol. Chem., March 19, 2004; 279(12): 11582 - 11592.
[Abstract] [Full Text] [PDF]


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J. Biol. Chem.Home page
E. Basha, G. J. Lee, L. A. Breci, A. C. Hausrath, N. R. Buan, K. C. Giese, and E. Vierling
The Identity of Proteins Associated with a Small Heat Shock Protein during Heat Stress in Vivo Indicates That These Chaperones Protect a Wide Range of Cellular Functions
J. Biol. Chem., February 27, 2004; 279(9): 7566 - 7575.
[Abstract] [Full Text] [PDF]


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J. Biol. Chem.Home page
K. C. Giese and E. Vierling
Changes in Oligomerization Are Essential for the Chaperone Activity of a Small Heat Shock Protein in Vivo and in Vitro
J. Biol. Chem., November 22, 2002; 277(48): 46310 - 46318.
[Abstract] [Full Text] [PDF]


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J. Biol. Chem.Home page
P. V. Sane, A. G. Ivanov, D. Sveshnikov, N. P. A. Huner, and G. Oquist
A Transient Exchange of the Photosystem II Reaction Center Protein D1:1 with D1:2 during Low Temperature Stress of Synechococcus sp. PCC 7942 in the Light Lowers the Redox Potential of QB
J. Biol. Chem., August 30, 2002; 277(36): 32739 - 32745.
[Abstract] [Full Text] [PDF]


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GeologyHome page
V.R. Phoenix, K.O. Konhauser, D.G. Adams, and S.H. Bottrell
Role of biomineralization as an ultraviolet shield: Implications for Archean life
Geology, September 1, 2001; 29(9): 823 - 826.
[Abstract] [Full Text] [PDF]


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Journal of the Geological SocietyHome page
R. RIDING
Temporal variation in calcification in marine cyanobacteria
Journal of the Geological Society, December 1, 1992; 149(6): 979 - 989.
[Abstract] [PDF]


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Genes Dev.Home page
W J Buikema and R Haselkorn
Characterization of a gene controlling heterocyst differentiation in the cyanobacterium Anabaena 7120.
Genes & Dev., February 1, 1991; 5(2): 321 - 330.
[Abstract] [PDF]




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