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Department of Bacteriology and Immunology, University of California, Berkeley, California, U.S. A.
ABSTRACT
SUMMARY A collection of 267 strains, representing many of the principal biotypes among aerobic pseudomonads, has been subjected to detailed study, with particular emphasis on biochemical, physiological and nutritional characters. A total of 146 different organic compounds were tested for their ability to serve as sources of carbon and energy. Other characters that were studied included : production of extracellular hydrolases; nitrogen sources and growth factor requirements H-chemolithotrophy; denitrifying ability; pigment production; ability to accumulate poly-p-hydroxybutyrate as a cellular reserve material; biochemical mechanisms of aromatic ring cleavage; and nature of the aerobic electron transport system. The resultant data have revealed many hitherto unrecognized characters of taxonomic significance. As a consequence, it has become possible to recognize among the biotypes examined a limited number of species which can be readily and clearly distinguished from one another by multiple, unrelated phenotypic differences.
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D. Kim, J.-C. Chae, G. J. Zylstra, Y.-S. Kim, S.-K. Kim, M. H. Nam, Y. M. Kim, and E. Kim Identification of a Novel Dioxygenase Involved in Metabolism of o-Xylene, Toluene, and Ethylbenzene by Rhodococcus sp. Strain DK17 Appl. Envir. Microbiol., December 1, 2004; 70(12): 7086 - 7092. [Abstract] [Full Text] [PDF]
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W.-K. Choy, L. Zhou, C. K.-C. Syn, L.-H. Zhang, and S. Swarup MorA Defines a New Class of Regulators Affecting Flagellar Development and Biofilm Formation in Diverse Pseudomonas Species J. Bacteriol., November 1, 2004; 186(21): 7221 - 7228. [Abstract] [Full Text] [PDF]
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L. De Gelder, J. M. Ponciano, Z. Abdo, P. Joyce, L. J. Forney, and E. M. Top Combining Mathematical Models and Statistical Methods to Understand and Predict the Dynamics of Antibiotic-Sensitive Mutants in a Population of Resistant Bacteria During Experimental Evolution Genetics, November 1, 2004; 168(3): 1131 - 1144. [Abstract] [Full Text] [PDF]
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 T Coenye, T Spilker, A Van Schoor, J J LiPuma, and P Vandamme Recovery of Burkholderia cenocepacia strain PHDC from cystic fibrosis patients in Europe Thorax, November 1, 2004; 59(11): 952 - 954. [Abstract] [Full Text] [PDF]
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 V. Barbe, D. Vallenet, N. Fonknechten, A. Kreimeyer, S. Oztas, L. Labarre, S. Cruveiller, C. Robert, S. Duprat, P. Wincker, et al. Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium Nucleic Acids Res., October 28, 2004; 32(19): 5766 - 5779. [Abstract] [Full Text] [PDF]
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I. Wagner-Dobler, H. Rheims, A. Felske, A. El-Ghezal, D. Flade-Schroder, H. Laatsch, S. Lang, R. Pukall, and B. J. Tindall Oceanibulbus indolifex gen. nov., sp. nov., a North Sea alphaproteobacterium that produces bioactive metabolites Int J Syst Evol Microbiol, July 1, 2004; 54(4): 1177 - 1184. [Abstract] [Full Text] [PDF]
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N. J. Palleroni, A. M. Port, H.-K. Chang, and G. J. Zylstra Hydrocarboniphaga effusa gen. nov., sp. nov., a novel member of the {gamma}-Proteobacteria active in alkane and aromatic hydrocarbon degradation Int J Syst Evol Microbiol, July 1, 2004; 54(4): 1203 - 1207. [Abstract] [Full Text] [PDF]
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K. Suresh, S. R. Prabagaran, S. Sengupta, and S. Shivaji Bacillus indicus sp. nov., an arsenic-resistant bacterium isolated from an aquifer in West Bengal, India Int J Syst Evol Microbiol, July 1, 2004; 54(4): 1369 - 1375. [Abstract] [Full Text] [PDF]
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C. K. C. Syn, J. K. Magnuson, M. T. Kingsley, and S. Swarup Characterization of Pseudomonas putida genes responsive to nutrient limitation Microbiology, June 1, 2004; 150(6): 1661 - 1669. [Abstract] [Full Text] [PDF]
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G. S. N. Reddy, G. I. Matsumoto, P. Schumann, E. Stackebrandt, and S. Shivaji Psychrophilic pseudomonads from Antarctica: Pseudomonas antarctica sp. nov., Pseudomonas meridiana sp. nov. and Pseudomonas proteolytica sp. nov. Int J Syst Evol Microbiol, May 1, 2004; 54(3): 713 - 719. [Abstract] [Full Text] [PDF]
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 P. Zhang, G. Sheng, D. C. Wolf, and Y. Feng Reduced Biodegradation of Benzonitrile in Soil Containing Wheat-Residue-Derived Ash J. Environ. Qual., May 1, 2004; 33(3): 868 - 872. [Abstract] [Full Text] [PDF]
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V. B. Weaver and R. Kolter Burkholderia spp. Alter Pseudomonas aeruginosa Physiology through Iron Sequestration J. Bacteriol., April 15, 2004; 186(8): 2376 - 2384. [Abstract] [Full Text] [PDF]
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L. P. Wackett, A. G. Dodge, and L. B. M. Ellis Microbial Genomics and the Periodic Table Appl. Envir. Microbiol., February 1, 2004; 70(2): 647 - 655. [Full Text] [PDF]
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C. O. Jeon, W. Park, W. C. Ghiorse, and E. L. Madsen Polaromonas naphthalenivorans sp. nov., a naphthalene-degrading bacterium from naphthalene-contaminated sediment Int J Syst Evol Microbiol, January 1, 2004; 54(1): 93 - 97. [Abstract] [Full Text] [PDF]
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R. E. Parales Nitrobenzoates and Aminobenzoates Are Chemoattractants for Pseudomonas Strains Appl. Envir. Microbiol., January 1, 2004; 70(1): 285 - 292. [Abstract] [Full Text] [PDF]
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C. O. Jeon, W. Park, P. Padmanabhan, C. DeRito, J. R. Snape, and E. L. Madsen Discovery of a bacterium, with distinctive dioxygenase, that is responsible for in situ biodegradation in contaminated sediment PNAS, November 11, 2003; 100(23): 13591 - 13596. [Abstract] [Full Text] [PDF]
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E. Lang, R. M. Kroppenstedt, J. Swiderski, P. Schumann, W. Ludwig, A. Schmid, and N. Weiss Emended description of Janibacter terrae, including ten dibenzofuran-degrading strains and Janibacter brevis as its later heterotypic synonym Int J Syst Evol Microbiol, November 1, 2003; 53(6): 1999 - 2005. [Abstract] [Full Text] [PDF]
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J. J. Jeong, J. H. Kim, C.-K. Kim, I. Hwang, and K. Lee 3- and 4-alkylphenol degradation pathway in Pseudomonas sp. strain KL28: genetic organization of the lap gene cluster and substrate specificities of phenol hydroxylase and catechol 2,3-dioxygenase Microbiology, November 1, 2003; 149(11): 3265 - 3277. [Abstract] [Full Text] [PDF]
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H.-K. Chang, P. Mohseni, and G. J. Zylstra Characterization and Regulation of the Genes for a Novel Anthranilate 1,2-Dioxygenase from Burkholderia cepacia DBO1 J. Bacteriol., October 1, 2003; 185(19): 5871 - 5881. [Abstract] [Full Text] [PDF]
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G. S. N. Reddy, G. I. Matsumoto, and S. Shivaji Sporosarcina macmurdoensis sp. nov., from a cyanobacterial mat sample from a pond in the McMurdo Dry Valleys, Antarctica Int J Syst Evol Microbiol, September 1, 2003; 53(5): 1363 - 1367. [Abstract] [Full Text] [PDF]
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T. Shigematsu, K. Yumihara, Y. Ueda, M. Numaguchi, S. Morimura, and K. Kida Delftia tsuruhatensis sp. nov., a terephthalate-assimilating bacterium isolated from activated sludge Int J Syst Evol Microbiol, September 1, 2003; 53(5): 1479 - 1483. [Abstract] [Full Text] [PDF]
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G. S. N. Reddy, J. S. S. Prakash, R. Srinivas, G. I. Matsumoto, and S. Shivaji Leifsonia rubra sp. nov. and Leifsonia aurea sp. nov., psychrophiles from a pond in Antarctica Int J Syst Evol Microbiol, July 1, 2003; 53(4): 977 - 984. [Abstract] [Full Text] [PDF]
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J. C. Spain, S. F. Nishino, B. Witholt, L.-S. Tan, and W. A. Duetz Production of 6-Phenylacetylene Picolinic Acid from Diphenylacetylene by a Toluene-Degrading Acinetobacter Strain Appl. Envir. Microbiol., July 1, 2003; 69(7): 4037 - 4042. [Abstract] [Full Text] [PDF]
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A. C. Negrete-Raymond, B. Weder, and L. P. Wackett Catabolism of Arylboronic Acids by Arthrobacter nicotinovorans Strain PBA Appl. Envir. Microbiol., July 1, 2003; 69(7): 4263 - 4267. [Abstract] [Full Text] [PDF]
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D. J. Lessner, R. E. Parales, S. Narayan, and D. T. Gibson Expression of the Nitroarene Dioxygenase Genes in Comamonas sp. Strain JS765 and Acidovorax sp. Strain JS42 Is Induced by Multiple Aromatic Compounds J. Bacteriol., July 1, 2003; 185(13): 3895 - 3904. [Abstract] [Full Text] [PDF]
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 R. Noble, T. R. Fermor, S. Lincoln, A. Dobrovin-Pennington, C. Evered, A. Mead, and R. Li Primordia initiation of mushroom (Agaricus bisporus) strains on axenic casing materials Mycologia, July 1, 2003; 95(4): 620 - 629. [Abstract] [Full Text] [PDF]
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I. Wagner-Dobler, H. Rheims, A. Felske, R. Pukall, and B. J. Tindall Jannaschia helgolandensis gen. nov., sp. nov., a novel abundant member of the marine Roseobacter clade from the North Sea Int J Syst Evol Microbiol, May 1, 2003; 53(3): 731 - 738. [Abstract] [Full Text] [PDF]
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C. Berndt, P. Meier, and W. Wackernagel DNA restriction is a barrier to natural transformation in Pseudomonas stutzeri JM300 Microbiology, April 1, 2003; 149(4): 895 - 901. [Abstract] [Full Text] [PDF]
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E. N. Choi, M. C. Cho, Y. Kim, C.-K. Kim, and K. Lee Expansion of growth substrate range in Pseudomonas putida F1 by mutations in both cymR and todS, which recruit a ring-fission hydrolase CmtE and induce the tod catabolic operon, respectively Microbiology, March 1, 2003; 149(3): 795 - 805. [Abstract] [Full Text] [PDF]
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S. Delorme, L. Philippot, V. Edel-Hermann, C. Deulvot, C. Mougel, and P. Lemanceau Comparative Genetic Diversity of the narG, nosZ, and 16S rRNA Genes in Fluorescent Pseudomonads Appl. Envir. Microbiol., February 1, 2003; 69(2): 1004 - 1012. [Abstract] [Full Text] [PDF]
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