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Supplementary Material

Supplementary material related to the following articles is available online:

From the Current Issue: 155 (11); [Table of Contents]

Yaligara Veeranagouda, Eun Jin Lim, Dong Wan Kim, Jin-Kyoo Kim, Kyungyun Cho, Hermann J. Heipieper, and Kyoung Lee
Formation of specialized aerial architectures by Rhodococcus during utilization of vaporized p-cresol
Microbiology 2009; 155(11): 3788-3796 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Figures]

Florence Tardy, Laure Maigre, François Poumarat, and Christine Citti
Identification and distribution of genetic markers in three closely related taxa of the Mycoplasma mycoides cluster: refining the relative position and boundaries of the Mycoplasma sp. bovine group 7 taxon (Mycoplasma leachii)
Microbiology 2009; 155(11): 3775-3787 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Janina P. Lewis, Divya Iyer, and Cecilia Anaya-Bergman
Adaptation of Porphyromonas gingivalis to microaerophilic conditions involves increased consumption of formate and reduced utilization of lactate
Microbiology 2009; 155(11): 3758-3774 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Devanand Kumar, Neha Minocha, Kalpana Rajanala, and Swati Saha
The distribution pattern of proliferating cell nuclear antigen in the nuclei of Leishmania donovani
Microbiology 2009; 155(11): 3748-3757 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Figure]

Katrijn Bockstael, Nick Geukens, Lieve Van Mellaert, Piet Herdewijn, Jozef Anné, and Arthur Van Aerschot
Evaluation of the type I signal peptidase as antibacterial target for biofilm-associated infections of Staphylococcus epidermidis
Microbiology 2009; 155(11): 3719-3729 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Ikuo Uchida, Ryoko Ishihara, Kiyoshi Tanaka, Eiji Hata, Sou-ichi Makino, Toru Kanno, Shinichi Hatama, Masato Kishima, Masato Akiba, Atsushi Watanabe, and Takayuki Kubota
Salmonella enterica serotype Typhimurium DT104 ArtA-dependent modification of pertussis toxin-sensitive G proteins in the presence of [32P]NAD
Microbiology 2009; 155(11): 3710-3718 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Harish K. Janagama, T. M. A. Senthilkumar, John P. Bannantine, G. Marcela Rodriguez, Issar Smith, Michael L. Paustian, Jeffery A. McGarvey, and Srinand Sreevatsan
Identification and functional characterization of the iron-dependent regulator (IdeR) of Mycobacterium avium subsp. paratuberculosis
Microbiology 2009; 155(11): 3683-3690 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Cathal S. Mahon, Anthony J. O'Donoghue, David H. Goetz, Patrick G. Murray, Charles S. Craik, and Maria G. Tuohy
Characterization of a multimeric, eukaryotic prolyl aminopeptidase: an inducible and highly specific intracellular peptidase from the non-pathogenic fungus Talaromyces emersonii
Microbiology 2009; 155(11): 3673-3682 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Guyue Cheng, Peiwei Zhao, Xiao-Feng Tang, and Bing Tang
Identification and characterization of a novel spore-associated subtilase from Thermoactinomyces sp. CDF
Microbiology 2009; 155(11): 3661-3672 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Figures]

Yuya Tanaka, Haruhiko Teramoto, Masayuki Inui, and Hideaki Yukawa
Identification of a second β-glucoside phosphoenolpyruvate : carbohydrate phosphotransferase system in Corynebacterium glutamicum R
Microbiology 2009; 155(11): 3652-3660 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Yangbo Hu, Yao Wang, Lisha Ding, Pei Lu, Steve Atkinson, and Shiyun Chen
Positive regulation of flhDC expression by OmpR in Yersinia pseudotuberculosis
Microbiology 2009; 155(11): 3622-3631 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Data]

Wesley P. Black, Qian Xu, Christena Linn Cadieux, Sang-Jin Suh, Wenyuan Shi, and Zhaomin Yang
Isolation and characterization of a suppressor mutation that restores Myxococcus xanthus exopolysaccharide production
Microbiology 2009; 155(11): 3599-3610 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Lionel Ferrières, Aoife Thompson, and David J. Clarke
Elevated levels of {sigma}S inhibit biofilm formation in Escherichia coli: a role for the Rcs phosphorelay
Microbiology 2009; 155(11): 3544-3553 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Figures]

Bijay K. Khajanchi, Jian Sha, Elena V. Kozlova, Tatiana E. Erova, Giovanni Suarez, Johanna C. Sierra, Vsevolod L. Popov, Amy J. Horneman, and Ashok K. Chopra
N-Acylhomoserine lactones involved in quorum sensing control the type VI secretion system, biofilm formation, protease production, and in vivo virulence in a clinical isolate of Aeromonas hydrophila
Microbiology 2009; 155(11): 3518-3531 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Morten Alhede, Thomas Bjarnsholt, Peter Ø. Jensen, Richard Kerry Phipps, Claus Moser, Lars Christophersen, Louise Dahl Christensen, Maria van Gennip, Matt Parsek, Niels Høiby, Thomas Bovbjerg Rasmussen, and Michael Givskov
Pseudomonas aeruginosa recognizes and responds aggressively to the presence of polymorphonuclear leukocytes
Microbiology 2009; 155(11): 3500-3508 [Abstract] [Full Text]  
Article supplement(s): [Suppplementary tables]

From Past Issues:

Daniel Paredes-Sabja, Peter Setlow, and Mahfuzur R. Sarker
The protease CspB is essential for initiation of cortex hydrolysis and dipicolinic acid (DPA) release during germination of spores of Clostridium perfringens type A food poisoning isolates
Microbiology 2009; 155(10): 3464-3472 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Theresa Lindhout, Peter C. Y. Lau, Dyanne Brewer, and Joseph S. Lam
Truncation in the core oligosaccharide of lipopolysaccharide affects flagella-mediated motility in Pseudomonas aeruginosa PAO1 via modulation of cell surface attachment
Microbiology 2009; 155(10): 3449-3460 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Machtelt Braaksma, Age K. Smilde, Mariët J. van der Werf, and Peter J. Punt
The effect of environmental conditions on extracellular protease activity in controlled fermentations of Aspergillus niger
Microbiology 2009; 155(10): 3430-3439 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Cláudio X. Machado, Paulo M. Pinto, Arnaldo Zaha, and Henrique B. Ferreira
A peroxiredoxin from Mycoplasma hyopneumoniae with a possible role in H2O2 detoxification
Microbiology 2009; 155(10): 3411-3419 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Jasmina Nikodinovic-Runic, Michelle Flanagan, Aisling R. Hume, Gerard Cagney, and Kevin E. O'Connor
Analysis of the Pseudomonas putida CA-3 proteome during growth on styrene under nitrogen-limiting and non-limiting conditions
Microbiology 2009; 155(10): 3348-3361 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Yongxing Gong, Xiao-Lin Tian, Tara Sutherland, Gary Sisson, Junni Mai, Junqi Ling, and Yung-Hua Li
Global transcriptional analysis of acid-inducible genes in Streptococcus mutans: multiple two-component systems involved in acid adaptation
Microbiology 2009; 155(10): 3322-3332 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Yun-Long Tsai, Ming-Hsuan Wang, Chan Gao, Sonja Klüsener, Christian Baron, Franz Narberhaus, and Erh-Min Lai
Small heat-shock protein HspL is induced by VirB protein(s) and promotes VirB/D4-mediated DNA transfer in Agrobacterium tumefaciens
Microbiology 2009; 155(10): 3270-3280 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Stacy L. Agar, Jian Sha, Wallace B. Baze, Tatiana E. Erova, Sheri M. Foltz, Giovanni Suarez, Shaofei Wang, and Ashok K. Chopra
Deletion of Braun lipoprotein gene (lpp) and curing of plasmid pPCP1 dramatically alter the virulence of Yersinia pestis CO92 in a mouse model of pneumonic plague
Microbiology 2009; 155(10): 3247-3259 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Zhensheng Pan, Ben Carter, Javier Núñez-García, Manal AbuOun, María Fookes, Al Ivens, Martin J. Woodward, and Muna F. Anjum
Identification of genetic and phenotypic differences associated with prevalent and non-prevalent Salmonella Enteritidis phage types: analysis of variation in amino acid transport
Microbiology 2009; 155(10): 3200-3213 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Xavier Didelot, Rachel Urwin, Martin C. J. Maiden, and Daniel Falush
Genealogical typing of Neisseria meningitidis
Microbiology 2009; 155(10): 3176-3186 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Donald M. Gardiner, Sheree Osborne, Kemal Kazan, and John M. Manners
Low pH regulates the production of deoxynivalenol by Fusarium graminearum
Microbiology 2009; 155(9): 3149-3156 [Abstract] [Full Text]  
Article supplement(s): [Supplementary material]

Yumi Imanishi, Sasitorn Jindamorakot, Savitree Limtong, and Takashi Nakase
Mode of vegetative reproduction of the bipolar budding yeast species Wickerhamomyces pijperi and related strains
Microbiology 2009; 155(9): 3142-3148 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Arnaldo Videira, Takao Kasuga, Chaoguang Tian, Catarina Lemos, Ana Castro, and N. Louise Glass
Transcriptional analysis of the response of Neurospora crassa to phytosphingosine reveals links to mitochondrial function
Microbiology 2009; 155(9): 3134-3141 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Michael W. Lewis, Ines V. Robalino, and Nemat O. Keyhani
Uptake of the fluorescent probe FM4-64 by hyphae and haemolymph-derived in vivo hyphal bodies of the entomopathogenic fungus Beauveria bassiana
Microbiology 2009; 155(9): 3110-3120 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Shigeki Moriya, Yoshikazu Kawai, Sakiko Kaji, Adrian Smith, Elizabeth J. Harry, and Jeffery Errington
Effects of oriC relocation on control of replication initiation in Bacillus subtilis
Microbiology 2009; 155(9): 3070-3082 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Elizabeth M. Vanderlinde, Artur Muszynski, Joe J. Harrison, Susan F. Koval, Dallas L. Foreman, Howard Ceri, Elmar L. Kannenberg, Russell W. Carlson, and Christopher K. Yost
Rhizobium leguminosarum biovar viciae 3841, deficient in 27-hydroxyoctacosanoate-modified lipopolysaccharide, is impaired in desiccation tolerance, biofilm formation and motility
Microbiology 2009; 155(9): 3055-3069 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Jia-Xun Feng, Zhi-Zhong Song, Cheng-Jie Duan, Shuai Zhao, Ying-Qiao Wu, Chao Wang, J. Maxwell Dow, and Ji-Liang Tang
The xrvA gene of Xanthomonas oryzae pv. oryzae, encoding an H-NS-like protein, regulates virulence in rice
Microbiology 2009; 155(9): 3033-3044 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Nivedita P. Khairnar and Hari S. Misra
DNA polymerase X from Deinococcus radiodurans implicated in bacterial tolerance to DNA damage is characterized as a short patch base excision repair polymerase
Microbiology 2009; 155(9): 3005-3014 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Jennifer Hedger, Peter C. Holmquist, Kimberly A. Leigh, Kumuda Saraff, Christina Pomykal, and Michael L. Summers
Illumination stimulates cAMP receptor protein-dependent transcriptional activation from regulatory regions containing class I and class II promoter elements in Synechocystis sp. PCC 6803
Microbiology 2009; 155(9): 2994-3004 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Masanobu Nishikawa and Kei Kobayashi
Streptomyces roseoverticillatus produces two different poly(amino acid)s: lariat-shaped {gamma}-poly(L-glutamic acid) and {epsilon}-poly(L-lysine)
Microbiology 2009; 155(9): 2988-2993 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Disha Awasthy, Sheshagiri Gaonkar, R. K. Shandil, Reena Yadav, Sowmya Bharath, Nimi Marcel, Venkita Subbulakshmi, and Umender Sharma
Inactivation of the ilvB1 gene in Mycobacterium tuberculosis leads to branched-chain amino acid auxotrophy and attenuation of virulence in mice
Microbiology 2009; 155(9): 2978-2987 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Timothy Sampson, Gregory W. Broussard, Laura J. Marinelli, Deborah Jacobs-Sera, Mondira Ray, Ching-Chung Ko, Daniel Russell, Roger W. Hendrix, and Graham F. Hatfull
Mycobacteriophages BPs, Angel and Halo: comparative genomics reveals a novel class of ultra-small mobile genetic elements
Microbiology 2009; 155(9): 2962-2977 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Morten Kjos, Ingolf F. Nes, and Dzung B. Diep
Class II one-peptide bacteriocins target a phylogenetically defined subgroup of mannose phosphotransferase systems on sensitive cells
Microbiology 2009; 155(9): 2949-2961 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Keith E. Weaver, Shirisha G. Reddy, Cassandra L. Brinkman, Smita Patel, Kenneth W. Bayles, and Jennifer L. Endres
Identification and characterization of a family of toxin–antitoxin systems related to the Enterococcus faecalis plasmid pAD1 par addiction module
Microbiology 2009; 155(9): 2930-2940 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

John A. Wright, Sabine S. Tötemeyer, Isabelle Hautefort, Corinne Appia-Ayme, Mark Alston, Vittoria Danino, Gavin K. Paterson, Pietro Mastroeni, Nathalie Ménager, Matthew Rolfe, Arthur Thompson, Sanja Ugrinovic, Leanne Sait, Tom Humphrey, Helen Northen, Sarah E. Peters, Duncan J. Maskell, Jay C. D. Hinton, and Clare E. Bryant
Multiple redundant stress resistance mechanisms are induced in Salmonella enterica serovar Typhimurium in response to alteration of the intracellular environment via TLR4 signalling
Microbiology 2009; 155(9): 2919-2929 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

B. House, J. V. Kus, N. Prayitno, R. Mair, L. Que, F. Chingcuanco, V. Gannon, D. G. Cvitkovitch, and D. Barnett Foster
Acid-stress-induced changes in enterohaemorrhagic Escherichia coli O157 : H7 virulence
Microbiology 2009; 155(9): 2907-2918 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Peter T. Beernink and Dan M. Granoff
The modular architecture of meningococcal factor H-binding protein
Microbiology 2009; 155(9): 2873-2883 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

B. Lesic, M. Starkey, J. He, R. Hazan, and L. G. Rahme
Quorum sensing differentially regulates Pseudomonas aeruginosa type VI secretion locus I and homologous loci II and III, which are required for pathogenesis
Microbiology 2009; 155(9): 2845-2855 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Joanne Cummins, F. Jerry Reen, Christine Baysse, Marlies J. Mooij, and Fergal O'Gara
Subinhibitory concentrations of the cationic antimicrobial peptide colistin induce the pseudomonas quinolone signal in Pseudomonas aeruginosa
Microbiology 2009; 155(9): 2826-2837 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Jomar Patrício Monteiro, Karl V. Clemons, Laurence F. Mirels, John A. Coller Jr, Thomas D. Wu, Jata Shankar, Catalina R. Lopes, and David A. Stevens
Genomic DNA microarray comparison of gene expression patterns in Paracoccidioides brasiliensis mycelia and yeasts in vitro
Microbiology 2009; 155(8): 2795-2808 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Zongtao Sun, Shaochuan Shen, Chao Wang, Hu Wang, Yaping Hu, Jiandong Jiao, Tingting Ma, Bing Tian, and Yuejin Hua
A novel carotenoid 1,2-hydratase (CruF) from two species of the non-photosynthetic bacterium Deinococcus
Microbiology 2009; 155(8): 2775-2783 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Marta Ávila, Muriel Jaquet, Deborah Moine, Teresa Requena, Carmen Peláez, Fabrizio Arigoni, and Ivana Jankovic
Physiological and biochemical characterization of the two {alpha}-L-rhamnosidases of Lactobacillus plantarum NCC245
Microbiology 2009; 155(8): 2739-2749 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Matthew D. Mastropaolo, Mary L. Thorson, and Ann M. Stevens
Comparison of Bacteroides thetaiotaomicron and Escherichia coli 16S rRNA gene expression signals
Microbiology 2009; 155(8): 2683-2693 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Daniel G. Kurth, Gabriela M. Gago, Agustina de la Iglesia, Bernardo Bazet Lyonnet, Ting-Wan Lin, Héctor R. Morbidoni, Shiou-Chuan Tsai, and Hugo Gramajo
ACCase 6 is the essential acetyl-CoA carboxylase involved in fatty acid and mycolic acid biosynthesis in mycobacteria
Microbiology 2009; 155(8): 2664-2675 [Abstract] [Full Text]  
Article supplement(s): [Supplementary material]

J. T. Tambong, R. Xu, and E. S. P. Bromfield
Intercistronic heterogeneity of the 16S–23S rRNA spacer region among Pseudomonas strains isolated from subterranean seeds of hog peanut (Amphicarpa bracteata)
Microbiology 2009; 155(8): 2630-2640 [Abstract] [Full Text]  
Article supplement(s): [Supplementaray figures]

Aditi D. Buch, G. Archana, and G. Naresh Kumar
Enhanced citric acid biosynthesis in Pseudomonas fluorescens ATCC 13525 by overexpression of the Escherichia coli citrate synthase gene
Microbiology 2009; 155(8): 2620-2629 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figure]

Thuy Do, Keith A. Jolley, Martin C. J. Maiden, Steven C. Gilbert, Douglas Clark, William G. Wade, and David Beighton
Population structure of Streptococcus oralis
Microbiology 2009; 155(8): 2593-2602 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Nathalie Grall, Jonathan Livny, Matthew Waldor, Monique Barel, Alain Charbit, and Karin L. Meibom
Pivotal role of the Francisella tularensis heat-shock sigma factor RpoH
Microbiology 2009; 155(8): 2560-2572 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Emelie Salomonsson, Åke Forsberg, Norbert Roos, Claudia Holz, Berenike Maier, Michael Koomey, and Hanne C. Winther-Larsen
Functional analyses of pilin-like proteins from Francisella tularensis: complementation of type IV pilus phenotypes in Neisseria gonorrhoeae
Microbiology 2009; 155(8): 2546-2559 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Kenneth R. Barth, Vincent M. Isabella, Lori F. Wright, and Virginia L. Clark
Resistance to peroxynitrite in Neisseria gonorrhoeae
Microbiology 2009; 155(8): 2532-2545 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Yangbo Hu, Pei Lu, Yao Wang, Lisha Ding, Steve Atkinson, and Shiyun Chen
OmpR positively regulates urease expression to enhance acid survival of Yersinia pseudotuberculosis
Microbiology 2009; 155(8): 2522-2531 [Abstract] [Full Text]  
Article supplement(s): [Supplementary material]

Priyanka Das, Amit Lahiri, Ayan Lahiri, and Dipshikha Chakravortty
Novel role of the nitrite transporter NirC in Salmonella pathogenesis: SPI2-dependent suppression of inducible nitric oxide synthase in activated macrophages
Microbiology 2009; 155(8): 2476-2489 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Yirong Zhang, Linquan Bai, and Zixin Deng
Functional characterization of the first two actinomycete 4-amino-4-deoxychorismate lyase genes
Microbiology 2009; 155(7): 2450-2459 [Abstract] [Full Text]  
Article supplement(s): [Supplementary material]

Igor A. Dvortsov, Natalia A. Lunina, Ludmila A. Chekanovskaya, Wolfgang H. Schwarz, Vladimir V. Zverlov, and Galina A. Velikodvorskaya
Carbohydrate-binding properties of a separately folding protein module from β-1,3-glucanase Lic16A of Clostridium thermocellum
Microbiology 2009; 155(7): 2442-2449 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Vesela Encheva, Haroun N. Shah, and Saheer E. Gharbia
Proteomic analysis of the adaptive response of Salmonella enterica serovar Typhimurium to growth under anaerobic conditions
Microbiology 2009; 155(7): 2429-2441 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Matthew J. Wargo and Deborah A. Hogan
Identification of genes required for Pseudomonas aeruginosa carnitine catabolism
Microbiology 2009; 155(7): 2411-2419 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Tables]

Nils Anders Leversen, Gustavo A. de Souza, Hiwa Målen, Swati Prasad, Inge Jonassen, and Harald G. Wiker
Evaluation of signal peptide prediction algorithms for identification of mycobacterial signal peptides using sequence data from proteomic methods
Microbiology 2009; 155(7): 2375-2383 [Abstract] [Full Text]  
Article supplement(s): [HTML Page - index.htslp]

Vijay A. K. B. Gundi, Lenie Dijkshoorn, Sophie Burignat, Didier Raoult, and Bernard La Scola
Validation of partial rpoB gene sequence analysis for the identification of clinically important and emerging Acinetobacter species
Microbiology 2009; 155(7): 2333-2341 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Rafael Szczepanowski, Burkhard Linke, Irene Krahn, Karl-Heinz Gartemann, Tim Gützkow, Wolfgang Eichler, Alfred Pühler, and Andreas Schlüter
Detection of 140 clinically relevant antibiotic-resistance genes in the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to selected antibiotics
Microbiology 2009; 155(7): 2306-2319 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Bénédicte Cesselin, Djae Ali, Jean-Jacques Gratadoux, Philippe Gaudu, Patrick Duwat, Alexandra Gruss, and Meriem El Karoui
Inactivation of the Lactococcus lactis high-affinity phosphate transporter confers oxygen and thiol resistance and alters metal homeostasis
Microbiology 2009; 155(7): 2274-2281 [Abstract] [Full Text]  
Article supplement(s): [Supplementary material]

Marko Davinic, Nancy L. Carty, Jane A. Colmer-Hamood, Michael San Francisco, and Abdul N. Hamood
Role of Vfr in regulating exotoxin A production by Pseudomonas aeruginosa
Microbiology 2009; 155(7): 2265-2273 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figure]

Satoshi Kimura, Yoshihiro Shiraiwa, and Iwane Suzuki
Function of the N-terminal region of the phosphate-sensing histidine kinase, SphS, in Synechocystis sp. PCC 6803
Microbiology 2009; 155(7): 2256-2264 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

María de la Paz Santangelo, Laura Klepp, Javier Nuñez-García, Federico C. Blanco, Marcelo Soria, Maria del Carmen García-Pelayo, María Verónica Bianco, Angel A. Cataldi, Paul Golby, Mary Jackson, Stephen V. Gordon, and Fabiana Bigi
Mce3R, a TetR-type transcriptional repressor, controls the expression of a regulon involved in lipid metabolism in Mycobacterium tuberculosis
Microbiology 2009; 155(7): 2245-2255 [Abstract] [Full Text]  
Article supplement(s): [Supplementary material]

Takafumi Mukaihara and Naoyuki Tamura
Identification of novel Ralstonia solanacearum type III effector proteins through translocation analysis of hrpB-regulated gene products
Microbiology 2009; 155(7): 2235-2244 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Vegard Eldholm, Ola Johnsborg, Kristine Haugen, Hilde Solheim Ohnstad, and Leiv Sigve Håvarstein
Fratricide in Streptococcus pneumoniae: contributions and role of the cell wall hydrolases CbpD, LytA and LytC
Microbiology 2009; 155(7): 2223-2234 [Abstract] [Full Text]  
Article supplement(s): [Supplementary material]

Hirofumi Hara, Yasuo Ohnishi, and Sueharu Horinouchi
DNA microarray analysis of global gene regulation by A-factor in Streptomyces griseus
Microbiology 2009; 155(7): 2197-2210 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Emiel B. M. Spuesens, Minoushka Oduber, Theo Hoogenboezem, Marcel Sluijter, Nico G. Hartwig, Annemarie M. C. van Rossum, and Cornelis Vink
Sequence variations in RepMP2/3 and RepMP4 elements reveal intragenomic homologous DNA recombination events in Mycoplasma pneumoniae
Microbiology 2009; 155(7): 2182-2196 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Sonia Arafah, Marie-Laure Rosso, Linda Rehaume, Robert E. W. Hancock, Michel Simonet, and Michaël Marceau
An iron-regulated LysR-type element mediates antimicrobial peptide resistance and virulence in Yersinia pseudotuberculosis
Microbiology 2009; 155(7): 2168-2181 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Yusuke Kajiyama, Masato Otagiri, Junichi Sekiguchi, Toshiaki Kudo, and Saori Kosono
The MrpA, MrpB and MrpD subunits of the Mrp antiporter complex in Bacillus subtilis contain membrane-embedded and essential acidic residues
Microbiology 2009; 155(7): 2137-2147 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

I. Dige, M. K. Raarup, J. R. Nyengaard, M. Kilian, and B. Nyvad
Actinomyces naeslundii in initial dental biofilm formation
Microbiology 2009; 155(7): 2116-2126 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figure]

Kees Maquelin, Theo Hoogenboezem, Jan-Willem Jachtenberg, Roger Dumke, Enno Jacobs, Gerwin J. Puppels, Nico G. Hartwig, and Cornelis Vink
Raman spectroscopic typing reveals the presence of carotenoids in Mycoplasma pneumoniae
Microbiology 2009; 155(6): 2068-2077 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Yoshiko Ishii, Shigeyuki Kakizawa, Ayaka Hoshi, Kensaku Maejima, Satoshi Kagiwada, Yasuyuki Yamaji, Kenro Oshima, and Shigetou Namba
In the non-insect-transmissible line of onion yellows phytoplasma (OY-NIM), the plasmid-encoded transmembrane protein ORF3 lacks the major promoter region
Microbiology 2009; 155(6): 2058-2067 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Slade A. Loutet, S. Josefin Bartholdson, John R. W. Govan, Dominic J. Campopiano, and Miguel A. Valvano
Contributions of two UDP-glucose dehydrogenases to viability and polymyxin B resistance of Burkholderia cenocepacia
Microbiology 2009; 155(6): 2029-2039 [Abstract] [Full Text]  
Article supplement(s): [Supplementary material]

Jan R. van der Ploeg
Analysis of CRISPR in Streptococcus mutans suggests frequent occurrence of acquired immunity against infection by M102-like bacteriophages
Microbiology 2009; 155(6): 1966-1976 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Clíona A. O'Dwyer, Ming-Shi Li, Paul R. Langford, and J. Simon Kroll
Meningococcal biofilm growth on an abiotic surface – a model for epithelial colonization?
Microbiology 2009; 155(6): 1940-1952 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Jessica L. Porter, Nicholas J. Tobias, Hui Hong, Kellie L. Tuck, Grant A. Jenkin, and Timothy P. Stinear
Transfer, stable maintenance and expression of the mycolactone polyketide megasynthase mls genes in a recombination-impaired Mycobacterium marinum
Microbiology 2009; 155(6): 1923-1933 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Francois P. Douillard, Kieran A. Ryan, Jason Hinds, and Paul W. O'Toole
Effect of FliK mutation on the transcriptional activity of the {sigma}54 sigma factor RpoN in Helicobacter pylori
Microbiology 2009; 155(6): 1901-1911 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Lisha Ding, Yao Wang, Yangbo Hu, Steve Atkinson, Paul Williams, and Shiyun Chen
Functional characterization of FlgM in the regulation of flagellar synthesis and motility in Yersinia pseudotuberculosis
Microbiology 2009; 155(6): 1890-1900 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Seok-Myung Lee, Byung-Joon Hwang, Younhee Kim, and Heung-Shick Lee
The cmaR gene of Corynebacterium ammoniagenes performs a novel regulatory role in the metabolism of sulfur-containing amino acids
Microbiology 2009; 155(6): 1878-1889 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Iván L. Calderón, Alex O. Elías, Eugenia L. Fuentes, Gonzalo A. Pradenas, Miguel E. Castro, Felipe A. Arenas, José M. Pérez, and Claudio C. Vásquez
Tellurite-mediated disabling of [4Fe–4S] clusters of Escherichia coli dehydratases
Microbiology 2009; 155(6): 1840-1846 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Robyn T. Eijlander, Magdalena A. Kolbusz, Erwin M. Berendsen, and Oscar P. Kuipers
Effects of altered TatC proteins on protein secretion efficiency via the twin-arginine translocation pathway of Bacillus subtilis
Microbiology 2009; 155(6): 1776-1785 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Valérie Barbe, Stéphane Cruveiller, Frank Kunst, Patricia Lenoble, Guillaume Meurice, Agnieszka Sekowska, David Vallenet, Tingzhang Wang, Ivan Moszer, Claudine Médigue, and Antoine Danchin
From a consortium sequence to a unified sequence: the Bacillus subtilis 168 reference genome a decade later
Microbiology 2009; 155(6): 1758-1775 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Zhong Qian, Bo Meng, Quanhui Wang, Zhuowei Wang, Chuanqi Zhou, Qian Wang, Shuyang Tu, Liang Lin, Yanhe Ma, and Siqi Liu
Systematic characterization of a novel gal operon in Thermoanaerobacter tengcongensis
Microbiology 2009; 155(5): 1717-1725 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Evelyn Barth, Katherine V. Gora, Katharina M. Gebendorfer, Florian Settele, Ursula Jakob, and Jeannette Winter
Interplay of cellular cAMP levels, {sigma}S activity and oxidative stress resistance in Escherichia coli
Microbiology 2009; 155(5): 1680-1689 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

J. Peña-Sánchez, S. Poggio, U. Flores-Pérez, A. Osorio, C. Domenzain, G. Dreyfus, and L. Camarena
Identification of the binding site of the {sigma}54 hetero-oligomeric FleQ/FleT activator in the flagellar promoters of Rhodobacter sphaeroides
Microbiology 2009; 155(5): 1669-1679 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Catherine Deschamps, Olivier Clermont, Marie Claire Hipeaux, Guillaume Arlet, Erick Denamur, and Catherine Branger
Multiple acquisitions of CTX-M plasmids in the rare D2 genotype of Escherichia coli provide evidence for convergent evolution
Microbiology 2009; 155(5): 1656-1668 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Julia K. Christenson and David M. Gordon
Evolution of colicin BM plasmids: the loss of the colicin B activity gene
Microbiology 2009; 155(5): 1645-1655 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Guang-Tao Lu, Jia-Ri Xie, Lei Chen, Jiang-Ru Hu, Shi-Qi An, Hui-Zhao Su, Jia-Xun Feng, Yong-Qiang He, Bo-Le Jiang, Dong-Jie Tang, and Ji-Liang Tang
Glyceraldehyde-3-phosphate dehydrogenase of Xanthomonas campestris pv. campestris is required for extracellular polysaccharide production and full virulence
Microbiology 2009; 155(5): 1602-1612 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Soma Sannigrahi, Xinjian Zhang, and Yih-Ling Tzeng
Regulation of the type I protein secretion system by the MisR/MisS two-component system in Neisseria meningitidis
Microbiology 2009; 155(5): 1588-1601 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Jesús Aranda, Maria Elena Garrido, Nahuel Fittipaldi, Pilar Cortés, Montserrat Llagostera, Marcelo Gottschalk, and Jordi Barbé
Protective capacities of cell surface-associated proteins of Streptococcus suis mutants deficient in divalent cation-uptake regulators
Microbiology 2009; 155(5): 1580-1587 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Isamu Miyakawa, Akira Okamuro, Slavomir Kinsky, Katarina Visacka, Lubomir Tomaska, and Jozef Nosek
Mitochondrial nucleoids from the yeast Candida parapsilosis: expansion of the repertoire of proteins associated with mitochondrial DNA
Microbiology 2009; 155(5): 1558-1568 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Gerald Kayingo, António Martins, Rachael Andrie, Luisa Neves, Cândida Lucas, and Brian Wong
A permease encoded by STL1 is required for active glycerol uptake by Candida albicans
Microbiology 2009; 155(5): 1547-1557 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Michelle N. Kelly, Douglas A. Johnston, Bethany A. Peel, Timothy W. Morgan, Glen E. Palmer, and Joy E. Sturtevant
Bmh1p (14-3-3) mediates pathways associated with virulence in Candida albicans
Microbiology 2009; 155(5): 1536-1546 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data] [Corrigendum]

G. A. O'May, S. M. Jacobsen, M. Longwell, P. Stoodley, H. L. T. Mobley, and M. E. Shirtliff
The high-affinity phosphate transporter Pst in Proteus mirabilis HI4320 and its importance in biofilm formation
Microbiology 2009; 155(5): 1523-1535 [Abstract] [Full Text]  
Article supplement(s): [HTML Page - index.htslp]

Crystal L. Schmerk, Barry N. Duplantis, Perry L. Howard, and Francis E. Nano
A Francisella novicida pdpA mutant exhibits limited intracellular replication and remains associated with the lysosomal marker LAMP-1
Microbiology 2009; 155(5): 1498-1504 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Armand Paauw, Martien P. M. Caspers, Maurine A. Leverstein-van Hall, Frank H. J. Schuren, Roy C. Montijn, Jan Verhoef, and Ad C. Fluit
Identification of resistance and virulence factors in an epidemic Enterobacter hormaechei outbreak strain
Microbiology 2009; 155(5): 1478-1488 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Nina Jochmann, Anna-Katharina Kurze, Lisa F. Czaja, Karina Brinkrolf, Iris Brune, Andrea T. Hüser, Nicole Hansmeier, Alfred Pühler, Ilya Borovok, and Andreas Tauch
Genetic makeup of the Corynebacterium glutamicum LexA regulon deduced from comparative transcriptomics and in vitro DNA band shift assays
Microbiology 2009; 155(5): 1459-1477 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Beverley A. Bray, Iain C. Sutcliffe, and Dean J. Harrington
Impact of lgt mutation on lipoprotein biosynthesis and in vitro phenotypes of Streptococcus agalactiae
Microbiology 2009; 155(5): 1451-1458 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figure]

Ofelia Chacon, Luiz E. Bermudez, Denise K. Zinniel, Harpreet K. Chahal, Robert J. Fenton, Zhengyu Feng, Kathy Hanford, L. Garry Adams, and Raúl G. Barletta
Impairment of D-alanine biosynthesis in Mycobacterium smegmatis determines decreased intracellular survival in human macrophages
Microbiology 2009; 155(5): 1440-1450 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Miriam Drath, Kerstin Baier, and Karl Forchhammer
An alternative methionine aminopeptidase, MAP-A, is required for nitrogen starvation and high-light acclimation in the cyanobacterium Synechocystis sp. PCC 6803
Microbiology 2009; 155(5): 1427-1439 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Rebecca Munk Vejborg and Per Klemm
Cellular chain formation in Escherichia coli biofilms
Microbiology 2009; 155(5): 1407-1417 [Abstract] [Full Text]  
Article supplement(s): [Supplementary material]

Jae-Han Kim, Sharon P. Shoemaker, and David A. Mills
Relaxed control of sugar utilization in Lactobacillus brevis
Microbiology 2009; 155(4): 1351-1359 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data] [Correction]

J. van den Brink, M. Akeroyd, R. van der Hoeven, J. T. Pronk, J. H. de Winde, and P. Daran-Lapujade
Energetic limits to metabolic flexibility: responses of Saccharomyces cerevisiae to glucose–galactose transitions
Microbiology 2009; 155(4): 1340-1350 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Nicole Sommerfeldt, Alexandra Possling, Gisela Becker, Christina Pesavento, Natalia Tschowri, and Regine Hengge
Gene expression patterns and differential input into curli fimbriae regulation of all GGDEF/EAL domain proteins in Escherichia coli
Microbiology 2009; 155(4): 1318-1331 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Vojtech Sedlácek, Rob J. M. van Spanning, and Igor Kucera
Ferric reductase A is essential for effective iron acquisition in Paracoccus denitrificans
Microbiology 2009; 155(4): 1294-1301 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Figure]

Keiko Sato, Nobuo Kido, Yukitaka Murakami, Charles I. Hoover, Koji Nakayama, and Fuminobu Yoshimura
Lipopolysaccharide biosynthesis-related genes are required for colony pigmentation of Porphyromonas gingivalis
Microbiology 2009; 155(4): 1282-1293 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Shiping Wu, Peter F. Barnes, Buka Samten, Xiuhua Pang, Sébastien Rodrigue, Saleena Ghanny, Patricia Soteropoulos, Luc Gaudreau, and Susan T. Howard
Activation of the eis gene in a W-Beijing strain of Mycobacterium tuberculosis correlates with increased SigA levels and enhanced intracellular growth
Microbiology 2009; 155(4): 1272-1281 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Nattika Pulsawat, Shigeru Kitani, Eriko Fukushima, and Takuya Nihira
Hierarchical control of virginiamycin production in Streptomyces virginiae by three pathway-specific regulators: VmsS, VmsT and VmsR
Microbiology 2009; 155(4): 1250-1259 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Atsuko Horino, Tsuyoshi Kenri, Yuko Sasaki, Noboru Okamura, and Tsuguo Sasaki
Identification of a site-specific tyrosine recombinase that mediates promoter inversions of phase-variable mpl lipoprotein genes in Mycoplasma penetrans
Microbiology 2009; 155(4): 1241-1249 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Katarina Visacka, Joachim M. Gerhold, Jana Petrovicova, Slavomir Kinsky, Priit Jõers, Jozef Nosek, Juhan Sedman, and Lubomir Tomaska
Novel subfamily of mitochondrial HMG box-containing proteins: functional analysis of Gcf1p from Candida albicans
Microbiology 2009; 155(4): 1226-1240 [Abstract] [Full Text]  
Article supplement(s): [HTML Page - index.htslp]

S. M. Shaheen, Marie-Claude Ouimet, and Gregory T. Marczynski
Comparative analysis of Caulobacter chromosome replication origins
Microbiology 2009; 155(4): 1215-1225 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Riho Teras, Julia Jakovleva, and Maia Kivisaar
Fis negatively affects binding of Tn4652 transposase by out-competing IHF from the left end of Tn4652
Microbiology 2009; 155(4): 1203-1214 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Andrew C. Lowenthal, Christopher Simon, Amber S. Fair, Khalid Mehmood, Karianne Terry, Stephanie Anastasia, and Karen M. Ottemann
A fixed-time diffusion analysis method determines that the three cheV genes of Helicobacter pylori differentially affect motility
Microbiology 2009; 155(4): 1181-1191 [Abstract] [Full Text]  
Article supplement(s): [Supplementary movie]

Todd G. Smith, Lara Pereira, and Timothy R. Hoover
Helicobacter pylori FlhB processing-deficient variants affect flagellar assembly but not flagellar gene expression
Microbiology 2009; 155(4): 1170-1180 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Rebecca Giorno, Michael Mallozzi, Joel Bozue, Krishna-Sulayman Moody, Alex Slack, Dengli Qiu, Rong Wang, Arthur Friedlander, Susan Welkos, and Adam Driks
Localization and assembly of proteins comprising the outer structures of the Bacillus anthracis spore
Microbiology 2009; 155(4): 1133-1145 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Ai Thi Thuy Le and Wolfgang Schumann
The Spo0E phosphatase of Bacillus subtilis is a substrate of the FtsH metalloprotease
Microbiology 2009; 155(4): 1122-1132 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Gundula Bosch, Tiansong Wang, Ekaterina Latypova, Marina G. Kalyuzhnaya, Murray Hackett, and Ludmila Chistoserdova
Insights into the physiology of Methylotenera mobilis as revealed by metagenome-based shotgun proteomic analysis
Microbiology 2009; 155(4): 1103-1110 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Roberta Provvedi, Francesca Boldrin, Francesco Falciani, Giorgio Palù, and Riccardo Manganelli
Global transcriptional response to vancomycin in Mycobacterium tuberculosis
Microbiology 2009; 155(4): 1093-1102 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

A. A. Bartosik, J. Mierzejewska, C. M. Thomas, and G. Jagura-Burdzy
ParB deficiency in Pseudomonas aeruginosa destabilizes the partner protein ParA and affects a variety of physiological parameters
Microbiology 2009; 155(4): 1080-1092 [Abstract] [Full Text]  
Article supplement(s): [Supplementary material]

F. Heath Damron, Jennifer Napper, M. Allison Teter, and Hongwei D. Yu
Lipotoxin F of Pseudomonas aeruginosa is an AlgU-dependent and alginate-independent outer membrane protein involved in resistance to oxidative stress and adhesion to A549 human lung epithelia
Microbiology 2009; 155(4): 1028-1038 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Jean Pierre Girardeau, Yolande Bertin, and Christine Martin
Genomic analysis of the PAI ICL3 locus in pathogenic LEE-negative Shiga toxin-producing Escherichia coli and Citrobacter rodentium
Microbiology 2009; 155(4): 1016-1027 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Rhonda I. Hobb, Joshua A. Fields, Christopher M. Burns, and Stuart A. Thompson
Evaluation of procedures for outer membrane isolation from Campylobacter jejuni
Microbiology 2009; 155(3): 979-988 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figure]

Lorena Ruiz, Yohann Couté, Borja Sánchez, Clara G. de los Reyes-Gavilán, Jean-Charles Sanchez, and Abelardo Margolles
The cell-envelope proteome of Bifidobacterium longum in an in vitro bile environment
Microbiology 2009; 155(3): 957-967 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Cédric Absalon, Michal Obuchowski, Edwige Madec, Delphine Delattre, I. Barry Holland, and Simone J. Séror
CpgA, EF-Tu and the stressosome protein YezB are substrates of the Ser/Thr kinase/phosphatase couple, PrkC/PrpC, in Bacillus subtilis
Microbiology 2009; 155(3): 932-943 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Genia Lücking, Monica K. Dommel, Siegfried Scherer, Agnes Fouet, and Monika Ehling-Schulz
Cereulide synthesis in emetic Bacillus cereus is controlled by the transition state regulator AbrB, but not by the virulence regulator PlcR
Microbiology 2009; 155(3): 922-931 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Armelle Bigot, Catherine Raynaud, Iharilalao Dubail, Marion Dupuis, Hamid Hossain, Torsten Hain, Trinad Chakraborty, and Alain Charbit
lmo1273, a novel gene involved in Listeria monocytogenes virulence
Microbiology 2009; 155(3): 891-902 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Catherine A. Brissette, Ashutosh Verma, Amy Bowman, Anne E. Cooley, and Brian Stevenson
The Borrelia burgdorferi outer-surface protein ErpX binds mammalian laminin
Microbiology 2009; 155(3): 863-872 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figure]

Xiaohui Zhou, Michael E. Konkel, and Douglas R. Call
Type III secretion system 1 of Vibrio parahaemolyticus induces oncosis in both epithelial and monocytic cell lines
Microbiology 2009; 155(3): 837-851 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Margarita Trobos, Henrik Christensen, Marianne Sunde, Steen Nordentoft, Yvonne Agersø, Gunnar S. Simonsen, Anette M. Hammerum, and John E. Olsen
Characterization of sulphonamide-resistant Escherichia coli using comparison of sul2 gene sequences and multilocus sequence typing
Microbiology 2009; 155(3): 831-836 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Lígia S. Nobre, Fátima Al-Shahrour, Joaquin Dopazo, and Lígia M. Saraiva
Exploring the antimicrobial action of a carbon monoxide-releasing compound through whole-genome transcription profiling of Escherichia coli
Microbiology 2009; 155(3): 813-824 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Anat Lerner, Yaacov Okon, and Saul Burdman
The wzm gene located on the pRhico plasmid of Azospirillum brasilense Sp7 is involved in lipopolysaccharide synthesis
Microbiology 2009; 155(3): 791-804 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Rashmi Shrivastava, Ananta Kumar Ghosh, and Amit Kumar Das
Intra- and intermolecular domain interactions among novel two-component system proteins coded by Rv0600c, Rv0601c and Rv0602c of Mycobacterium tuberculosis
Microbiology 2009; 155(3): 772-779 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Yu-Kuo Tsai, Hung-Wen Chen, Ta-Chun Lo, and Thy-Hou Lin
Specific point mutations in Lactobacillus casei ATCC 27139 cause a phenotype switch from Lac– to Lac+
Microbiology 2009; 155(3): 751-760 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Keiro Watanabe, Yoshiki Tsuchida, Naoko Okibe, Haruhiko Teramoto, Nobuaki Suzuki, Masayuki Inui, and Hideaki Yukawa
Scanning the Corynebacterium glutamicum R genome for high-efficiency secretion signal sequences
Microbiology 2009; 155(3): 741-750 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

F. J. M. Mojica, C. Díez-Villaseñor, J. García-Martínez, and C. Almendros
Short motif sequences determine the targets of the prokaryotic CRISPR defence system
Microbiology 2009; 155(3): 733-740 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Valérie Dekimpe and Eric Déziel
Revisiting the quorum-sensing hierarchy in Pseudomonas aeruginosa: the transcriptional regulator RhlR regulates LasR-specific factors
Microbiology 2009; 155(3): 712-723 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

W. James Gooderham, Shaan L. Gellatly, François Sanschagrin, Joseph B. McPhee, Manjeet Bains, Celine Cosseau, Roger C. Levesque, and Robert E. W. Hancock
The sensor kinase PhoQ mediates virulence in Pseudomonas aeruginosa
Microbiology 2009; 155(3): 699-711 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

H. Mikkelsen, N. J. Bond, M. E. Skindersoe, M. Givskov, K. S. Lilley, and M. Welch
Biofilms and type III secretion are not mutually exclusive in Pseudomonas aeruginosa
Microbiology 2009; 155(3): 687-698 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Elisabete Valério, Lélia Chambel, Sérgio Paulino, Natália Faria, Paulo Pereira, and Rogério Tenreiro
Molecular identification, typing and traceability of cyanobacteria from freshwater reservoirs
Microbiology 2009; 155(2): 642-656 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Theodora C. Sideri, Sylvia A. Willetts, and Simon V. Avery
Methionine sulphoxide reductases protect iron–sulphur clusters from oxidative inactivation in yeast
Microbiology 2009; 155(2): 612-623 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Preston E. Bratcher, In H. Park, Susan K. Hollingshead, and Moon H. Nahm
Production of a unique pneumococcal capsule serotype belonging to serogroup 6
Microbiology 2009; 155(2): 576-583 [Abstract] [Full Text]  
Article supplement(s): [CORRIGENDUM]

Gordon Churchward, Christopher Bates, Asiya A. Gusa, Virginia Stringer, and June R. Scott
Regulation of streptokinase expression by CovR/S in Streptococcus pyogenes: CovR acts through a single high-affinity binding site
Microbiology 2009; 155(2): 566-575 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Trang Nguyen, Zhijun Zhang, I-Hsiu Huang, Chenggang Wu, Justin Merritt, Wenyuan Shi, and Fengxia Qi
Genes involved in the repression of mutacin I production in Streptococcus mutans
Microbiology 2009; 155(2): 551-556 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Noriko Nakanishi, Kosuke Tashiro, Satoru Kuhara, Tetsuya Hayashi, Nakaba Sugimoto, and Toru Tobe
Regulation of virulence by butyrate sensing in enterohaemorrhagic Escherichia coli
Microbiology 2009; 155(2): 521-530 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Anna-Marie Lindsay, Meng Zhang, Zoe Mitchell, Matthew T. G. Holden, Andrew S. Waller, Iain C. Sutcliffe, and Gary W. Black
The Streptococcus equi prophage-encoded protein SEQ2045 is a hyaluronan-specific hyaluronate lyase that is produced during equine infection
Microbiology 2009; 155(2): 443-449 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figure]

S. T. Huang, S. S. Tzean, B. Y. Tsai, and H. J. Hsieh
Cloning and heterologous expression of a novel ligninolytic peroxidase gene from poroid brown-rot fungus Antrodia cinnamomea
Microbiology 2009; 155(2): 424-433 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Kassem Hamze, Daria Julkowska, Sabine Autret, Krzysztof Hinc, Krzysztofa Nagorska, Agnieszka Sekowska, I. Barry Holland, and Simone J. Séror
Identification of genes required for different stages of dendritic swarming in Bacillus subtilis, with a novel role for phrC
Microbiology 2009; 155(2): 398-412 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Figures] [Errata]

Libia Saborido Basconcillo, Rahat Zaheer, Turlough M. Finan, and Brian E. McCarry
Cyclopropane fatty acyl synthase in Sinorhizobium meliloti
Microbiology 2009; 155(2): 373-385 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Carlos Barreiro, Diana Nakunst, Andrea T. Hüser, Héctor D. de Paz, Jörn Kalinowski, and Juan F. Martín
Microarray studies reveal a ‘differential response’ to moderate or severe heat shock of the HrcA- and HspR-dependent systems in Corynebacterium glutamicum
Microbiology 2009; 155(2): 359-372 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Ky-Anh Nguyen, Jasiek Zylicz, Pawel Szczesny, Aneta Sroka, Neil Hunter, and Jan Potempa
Verification of a topology model of PorT as an integral outer-membrane protein in Porphyromonas gingivalis
Microbiology 2009; 155(2): 328-337 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Bryan Marshall, Alain Stintzi, Christie Gilmour, Jean-Marie Meyer, and Keith Poole
Citrate-mediated iron uptake in Pseudomonas aeruginosa: involvement of the citrate-inducible FecA receptor and the FeoB ferrous iron transporter
Microbiology 2009; 155(1): 305-315 [Abstract] [Full Text]  
Article supplement(s): [Supplementary material]

Ana Laura Ramos-Vega, Yadira Dávila-Martínez, Christian Sohlenkamp, Sandra Contreras-Martínez, Sergio Encarnación, Otto Geiger, and Isabel M. López-Lara
SMb20651 is another acyl carrier protein from Sinorhizobium meliloti
Microbiology 2009; 155(1): 257-267 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data] [Corrigendum]

Arvind A. Bhagwat, Won Jun, Liu Liu, Porteen Kannan, Mahesh Dharne, Benedict Pheh, Ben D. Tall, Mahendra H. Kothary, Kenneth C. Gross, Scott Angle, Jianghong Meng, and Allen Smith
Osmoregulated periplasmic glucans of Salmonella enterica serovar Typhimurium are required for optimal virulence in mice
Microbiology 2009; 155(1): 229-237 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

J. Xu, D. Baldwin, C. Kindrachuk, and D. D. Hegedus
Comparative EST analysis of a Zoophthora radicans isolate derived from Pieris brassicae and an isogenic strain adapted to Plutella xylostella
Microbiology 2009; 155(1): 174-185 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Table]

Yongshu Zhang, Marvin Whiteley, Jens Kreth, Yu Lei, Ali Khammanivong, Jamie N. Evavold, Jingyuan Fan, and Mark C. Herzberg
The two-component system BfrAB regulates expression of ABC transporters in Streptococcus gordonii and Streptococcus sanguinis
Microbiology 2009; 155(1): 165-173 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Svenja S. Nentwich, Karina Brinkrolf, Lars Gaigalat, Andrea T. Hüser, Daniel A. Rey, Tobias Mohrbach, Kay Marin, Alfred Pühler, Andreas Tauch, and Jörn Kalinowski
Characterization of the LacI-type transcriptional repressor RbsR controlling ribose transport in Corynebacterium glutamicum ATCC 13032
Microbiology 2009; 155(1): 150-164 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Qing Yan, Wei Gao, Xiao-Gang Wu, and Li-Qun Zhang
Regulation of the PcoI/PcoR quorum-sensing system in Pseudomonas fluorescens 2P24 by the PhoP/PhoQ two-component system
Microbiology 2009; 155(1): 124-133 [Abstract] [Full Text]  
Article supplement(s): [Supplementary material]

Sarah C. Pulvermacher, Lorraine T. Stauffer, and George V. Stauffer
Role of the sRNA GcvB in regulation of cycA in Escherichia coli
Microbiology 2009; 155(1): 106-114 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Carlo Viti, Francesca Decorosi, Annalisa Mini, Enrico Tatti, and Luciana Giovannetti
Involvement of the oscA gene in the sulphur starvation response and in Cr(VI) resistance in Pseudomonas corrugata 28
Microbiology 2009; 155(1): 95-105 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

John A. Wright, Andrew J. Grant, Douglas Hurd, Marcus Harrison, Edward J. Guccione, David J. Kelly, and Duncan J. Maskell
Metabolite and transcriptome analysis of Campylobacter jejuni in vitro growth reveals a stationary-phase physiological switch
Microbiology 2009; 155(1): 80-94 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Christopher L. Case, Jason R. Rodriguez, and Biswarup Mukhopadhyay
Characterization of an NADH oxidase of the flavin-dependent disulfide reductase family from Methanocaldococcus jannaschii
Microbiology 2009; 155(1): 69-79 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Jiaqin Zhang and Indranil Biswas
A phenotypic microarray analysis of a Streptococcus mutans liaS mutant
Microbiology 2009; 155(1): 61-68 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Yingji Jin, Yuki Takegahara, Yo Sugawara, Takuhiro Matsumura, and Yukako Fujinaga
Disruption of the epithelial barrier by botulinum haemagglutinin (HA) proteins – differences in cell tropism and the mechanism of action between HA proteins of types A or B, and HA proteins of type C
Microbiology 2009; 155(1): 35-45 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Oliver Riebe, Ralf-Jörg Fischer, David A. Wampler, Donald M. Kurtz Jr, and Hubert Bahl
Pathway for H2O2 and O2 detoxification in Clostridium acetobutylicum
Microbiology 2009; 155(1): 16-24 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figure]

Regina Stoll, Sonja Mertins, Biju Joseph, Stefanie Müller-Altrock, and Werner Goebel
Modulation of PrfA activity in Listeria monocytogenes upon growth in different culture media
Microbiology 2008; 154(12): 3856-3876 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Hencelyn G. Chu, Sara K. Weeks, Diana M. Gilligan, and Daniel D. Rockey
Host {alpha}-adducin is redistributed and localized to the inclusion membrane in Chlamydia- and Chlamydophila-infected cells
Microbiology 2008; 154(12): 3848-3855 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Joy D. Van Nostrand, John M. Arthur, Lisa E. Kilpatrick, Benjamin A. Neely, Paul M. Bertsch, and Pamela J. Morris
Changes in protein expression in Burkholderia vietnamiensis PR1301 at pH 5 and 7 with and without nickel
Microbiology 2008; 154(12): 3813-3824 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Figures and Tables]

André M. Murad, Eliane F. Noronha, Robert N. G. Miller, Fabio T. Costa, Caroline D. Pereira, Ângela Mehta, Ruy A. Caldas, and Octávio L. Franco
Proteomic analysis of Metarhizium anisopliae secretion in the presence of the insect pest Callosobruchus maculatus
Microbiology 2008; 154(12): 3766-3774 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

L. Nevarez, V. Vasseur, G. Le Dréan, A. Tanguy, I. Guisle-Marsollier, R. Houlgatte, and G. Barbier
Isolation and analysis of differentially expressed genes in Penicillium glabrum subjected to thermal stress
Microbiology 2008; 154(12): 3752-3765 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Paul R. Wheeler, Roland Brosch, Nicholas G. Coldham, Jacqueline K. Inwald, R. Glyn Hewinson, and Stephen V. Gordon
Functional analysis of a clonal deletion in an epidemic strain of Mycobacterium bovis reveals a role in lipid metabolism
Microbiology 2008; 154(12): 3731-3742 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Bing Tian, Zongtao Sun, Zhenjian Xu, Shaochuan Shen, Hu Wang, and Yuejin Hua
Carotenoid 3',4'-desaturase is involved in carotenoid biosynthesis in the radioresistant bacterium Deinococcus radiodurans
Microbiology 2008; 154(12): 3697-3706 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Figures]

Maricel Vidal, Valeria Prado, Gregory C. Whitlock, Aldo Solari, Alfredo G. Torres, and Roberto M. Vidal
Subtractive hybridization and identification of putative adhesins in a Shiga toxin-producing eae-negative Escherichia coli
Microbiology 2008; 154(12): 3639-3648 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Kate Porter, Brendan E. Russ, Ji Yang, and Michael L. Dyall-Smith
The transcription programme of the protein-primed halovirus SH1
Microbiology 2008; 154(11): 3599-3608 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Ramón O. García-Rico, Francisco Fierro, Elba Mauriz, Ana Gómez, María Ángeles Fernández-Bodega, and Juan F. Martín
The heterotrimeric G{alpha} protein Pga1 regulates biosynthesis of penicillin, chrysogenin and roquefortine in Penicillium chrysogenum
Microbiology 2008; 154(11): 3567-3578 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Michael L. Kotewicz, Mark K. Mammel, J. Eugene LeClerc, and Thomas A. Cebula
Optical mapping and 454 sequencing of Escherichia coli O157 : H7 isolates linked to the US 2006 spinach-associated outbreak
Microbiology 2008; 154(11): 3518-3528 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Michelle C. Hares, Stewart J. Hinchliffe, Philippa C. R. Strong, Ioannis Eleftherianos, Andrea J. Dowling, Richard H. ffrench-Constant, and Nick Waterfield
The Yersinia pseudotuberculosis and Yersinia pestis toxin complex is active against cultured mammalian cells
Microbiology 2008; 154(11): 3503-3517 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Prachi P. Singh, Marcela Parra, Nathalie Cadieux, and Michael J. Brennan
A comparative study of host response to three Mycobacterium tuberculosis PE_PGRS proteins
Microbiology 2008; 154(11): 3469-3479 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Sture Karlsson, Lars G. Burman, and Thomas Åkerlund
Induction of toxins in Clostridium difficile is associated with dramatic changes of its metabolism
Microbiology 2008; 154(11): 3430-3436 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Qilong Xu, Kristy McShan, and Fang Ting Liang
Modification of Borrelia burgdorferi to overproduce OspA or VlsE alters its infectious behaviour
Microbiology 2008; 154(11): 3420-3429 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Akiko Hasegawa, Hiroshi Ogasawara, Ayako Kori, Jun Teramoto, and Akira Ishihama
The transcription regulator AllR senses both allantoin and glyoxylate and controls a set of genes for degradation and reutilization of purines
Microbiology 2008; 154(11): 3366-3378 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Hassan Badrane, M. Hong Nguyen, Shaoji Cheng, Vipul Kumar, Hartmut Derendorf, Kenneth A. Iczkowski, and Cornelius J. Clancy
The Candida albicans phosphatase Inp51p interacts with the EH domain protein Irs4p, regulates phosphatidylinositol-4,5-bisphosphate levels and influences hyphal formation, the cell integrity pathway and virulence
Microbiology 2008; 154(11): 3296-3308 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Yung-Hua Li, Xiao-Lin Tian, Gillian Layton, Chris Norgaard, and Gary Sisson
Additive attenuation of virulence and cariogenic potential of Streptococcus mutans by simultaneous inactivation of the ComCDE quorum-sensing system and HK/RR11 two-component regulatory system
Microbiology 2008; 154(11): 3256-3265 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Marc Breton, Sybille Duret, Nathalie Arricau-Bouvery, Laure Béven, and Joël Renaudin
Characterizing the replication and stability regions of Spiroplasma citri plasmids identifies a novel replication protein and expands the genetic toolbox for plant-pathogenic spiroplasmas
Microbiology 2008; 154(10): 3232-3244 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Jouko Sillanpää, Sreedhar R. Nallapareddy, Vittal P. Prakash, Xiang Qin, Magnus Höök, George M. Weinstock, and Barbara E. Murray
Identification and phenotypic characterization of a second collagen adhesin, Scm, and genome-based identification and analysis of 13 other predicted MSCRAMMs, including four distinct pilus loci, in Enterococcus faecium
Microbiology 2008; 154(10): 3199-3211 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Oscar Q. Pich, Raul Burgos, Mario Ferrer-Navarro, Enrique Querol, and Jaume Piñol
Role of Mycoplasma genitalium MG218 and MG317 cytoskeletal proteins in terminal organelle organization, gliding motility and cytadherence
Microbiology 2008; 154(10): 3188-3198 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Elisabeth Sonnleitner, Theresa Sorger-Domenigg, Monika J. Madej, Sven Findeiss, Jörg Hackermüller, Alexander Hüttenhofer, Peter F. Stadler, Udo Bläsi, and Isabella Moll
Detection of small RNAs in Pseudomonas aeruginosa by RNomics and structure-based bioinformatic tools
Microbiology 2008; 154(10): 3175-3187 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Dennis Dienst, Ulf Dühring, Hans-Joachim Mollenkopf, Jörg Vogel, Jochen Golecki, Wolfgang R. Hess, and Annegret Wilde
The cyanobacterial homologue of the RNA chaperone Hfq is essential for motility of Synechocystis sp. PCC 6803
Microbiology 2008; 154(10): 3134-3143 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Data]

Vinh Hoa Pham, Jeong-Joong Yong, Soo-Je Park, Dae-No Yoon, Won-Hyong Chung, and Sung-Keun Rhee
Molecular analysis of the diversity of the sulfide : quinone reductase (sqr) gene in sediment environments
Microbiology 2008; 154(10): 3112-3121 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Freya Senf, Jan Tommassen, and Margot Koster
Polar secretion of proteins via the Xcp type II secretion system in Pseudomonas aeruginosa
Microbiology 2008; 154(10): 3025-3032 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Diego Ruiz, Paloma Salinas, Maria Luisa Lopez-Redondo, Maria Luisa Cayuela, Alberto Marina, and Asunción Contreras
Phosphorylation-independent activation of the atypical response regulator NblR
Microbiology 2008; 154(10): 3002-3015 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figure]

Silvana K. Rampini, Petra Selchow, Christine Keller, Stefan Ehlers, Erik C. Böttger, and Peter Sander
LspA inactivation in Mycobacterium tuberculosis results in attenuation without affecting phagosome maturation arrest
Microbiology 2008; 154(10): 2991-3001 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Saeed Tarighi, Qing Wei, Miguel Cámara, Paul Williams, Matthew P. Fletcher, Tommi Kajander, and Pierre Cornelis
The PA4204 gene encodes a periplasmic gluconolactonase (PpgL) which is important for fitness of Pseudomonas aeruginosa
Microbiology 2008; 154(10): 2979-2990 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Jan R. van der Ploeg
Characterization of Streptococcus gordonii prophage PH15: complete genome sequence and functional analysis of phage-encoded integrase and endolysin
Microbiology 2008; 154(10): 2970-2978 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Manish Kumar and Dipankar Chatterji
Cyclic di-GMP: a second messenger required for long-term survival, but not for biofilm formation, in Mycobacterium smegmatis
Microbiology 2008; 154(10): 2942-2955 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Yanina R. Sevastsyanovich, Renata Krasowiak, Lewis E. H. Bingle, Anthony S. Haines, Sergey L. Sokolov, Irina A. Kosheleva, Anastassia A. Leuchuk, Marina A. Titok, Kornelia Smalla, and Christopher M. Thomas
Diversity of IncP-9 plasmids of Pseudomonas
Microbiology 2008; 154(10): 2929-2941 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Yoon-Ah Hur, Si-Sun Choi, David H. Sherman, and Eung-Soo Kim
Identification of TmcN as a pathway-specific positive regulator of tautomycetin biosynthesis in Streptomyces sp. CK4412
Microbiology 2008; 154(10): 2912-2919 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Sascha Doekel, Marie-Françoise Coëffet-Le Gal, Jian-Qiao Gu, Min Chu, Richard H. Baltz, and Paul Brian
Non-ribosomal peptide synthetase module fusions to produce derivatives of daptomycin in Streptomyces roseosporus
Microbiology 2008; 154(9): 2872-2880 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Amit Lahiri, Priyanka Das, and Dipshikha Chakravortty
The LysR-type transcriptional regulator Hrg counteracts phagocyte oxidative burst and imparts survival advantage to Salmonella enterica serovar Typhimurium
Microbiology 2008; 154(9): 2837-2846 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Francesco Imperi, Lorenza Putignani, Federica Tiburzi, Cecilia Ambrosi, Rita Cipollone, Paolo Ascenzi, and Paolo Visca
Membrane-association determinants of the {omega}-amino acid monooxygenase PvdA, a pyoverdine biosynthetic enzyme from Pseudomonas aeruginosa
Microbiology 2008; 154(9): 2804-2813 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Figure]

Sugopa Sengupta, Soumitra Ghosh, and Valakunja Nagaraja
Moonlighting function of glutamate racemase from Mycobacterium tuberculosis: racemization and DNA gyrase inhibition are two independent activities of the enzyme
Microbiology 2008; 154(9): 2796-2803 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Joanne M. Kingsbury and John H. McCusker
Threonine biosynthetic genes are essential in Cryptococcus neoformans
Microbiology 2008; 154(9): 2767-2775 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Hechun Jiang, Haomiao Ouyang, Hui Zhou, and Cheng Jin
GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability of Aspergillus fumigatus
Microbiology 2008; 154(9): 2730-2739 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Table]

Zhiming Ouyang, Jon S. Blevins, and Michael V. Norgard
Transcriptional interplay among the regulators Rrp2, RpoN and RpoS in Borrelia burgdorferi
Microbiology 2008; 154(9): 2641-2658 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Françoise Bringel, Philippe Hammann, Valérie Kugler, and Florence Arsène-Ploetze
Lactobacillus plantarum response to inorganic carbon concentrations: PyrR2-dependent and -independent transcription regulation of genes involved in arginine and nucleotide metabolism
Microbiology 2008; 154(9): 2629-2640 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figure]

Yohei Katsuyama, Miku Matsuzawa, Nobutaka Funa, and Sueharu Horinouchi
Production of curcuminoids by Escherichia coli carrying an artificial biosynthesis pathway
Microbiology 2008; 154(9): 2620-2628 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Carla Risso, Barbara A. Methé, Hila Elifantz, Dawn E. Holmes, and Derek R. Lovley
Highly conserved genes in Geobacter species with expression patterns indicative of acetate limitation
Microbiology 2008; 154(9): 2589-2599 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Michael J. Oneal, Erin R. Schafer, Melissa L. Madsen, and F. Chris Minion
Global transcriptional analysis of Mycoplasma hyopneumoniae following exposure to norepinephrine
Microbiology 2008; 154(9): 2581-2588 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Andre Villegas and Andrew M. Kropinski
An analysis of initiation codon utilization in the Domain Bacteria – concerns about the quality of bacterial genome annotation
Microbiology 2008; 154(9): 2559-2661 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Ümit Pul, Bianca Lux, Reinhild Wurm, and Rolf Wagner
Effect of upstream curvature and transcription factors H-NS and LRP on the efficiency of Escherichia coli rRNA promoters P1 and P2 – a phasing analysis
Microbiology 2008; 154(9): 2546-2558 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

S. Josefin Bartholdson, Alan R. Brown, Ben R. Mewburn, David J. Clarke, Stephen C. Fry, Dominic J. Campopiano, and John R. W. Govan
Plant host and sugar alcohol induced exopolysaccharide biosynthesis in the Burkholderia cepacia complex
Microbiology 2008; 154(8): 2513-2521 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Maria Hadjifrangiskou and Theresa M. Koehler
Intrinsic curvature associated with the coordinately regulated anthrax toxin gene promoters
Microbiology 2008; 154(8): 2501-2512 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Jolanda M. Lambert, Roland J. Siezen, Willem M. de Vos, and Michiel Kleerebezem
Improved annotation of conjugated bile acid hydrolase superfamily members in Gram-positive bacteria
Microbiology 2008; 154(8): 2492-2500 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Patrick Scheu, Sven Sdorra, Yun-Feng Liao, Maria Wegner, Thomas Basché, Gottfried Unden, and Wolfgang Erker
Polar accumulation of the metabolic sensory histidine kinases DcuS and CitA in Escherichia coli
Microbiology 2008; 154(8): 2463-2472 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Johannes Sikorski, Evelyne Brambilla, Reiner M. Kroppenstedt, and Brian J. Tindall
The temperature-adaptive fatty acid content in Bacillus simplex strains from ‘Evolution Canyon’, Israel
Microbiology 2008; 154(8): 2416-2426 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Mark J. Jacobson, Guangyun Lin, Thomas S. Whittam, and Eric A. Johnson
Phylogenetic analysis of Clostridium botulinum type A by multi-locus sequence typing
Microbiology 2008; 154(8): 2408-2415 [Abstract] [Full Text]  
Article supplement(s): [Supplementary material]

Laura Mattinen, Panu Somervuo, Johanna Nykyri, Riitta Nissinen, Petri Kouvonen, Garry Corthals, Petri Auvinen, Marja Aittamaa, Jari P. T. Valkonen, and Minna Pirhonen
Microarray profiling of host-extract-induced genes and characterization of the type VI secretion cluster in the potato pathogen Pectobacterium atrosepticum
Microbiology 2008; 154(8): 2387-2396 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table] [Corrigendum - new Fig. 2]

Sijana H. Dzinic, Meghna Shukla, Ilir Mandija, Tammy S. Ram, and Jeffrey L. Ram
Variable length tandem repeat polyglutamine sequences in the flexible tether region of the Tsr chemotaxis receptor of Escherichia coli
Microbiology 2008; 154(8): 2380-2386 [Abstract] [Full Text]  
Article supplement(s): [Supplementary material]

Pedro Filipe Teixeira, Anders Jonsson, Martina Frank, He Wang, and Stefan Nordlund
Interaction of the signal transduction protein GlnJ with the cellular targets AmtB1, GlnE and GlnD in Rhodospirillum rubrum: dependence on manganese, 2-oxoglutarate and the ADP/ATP ratio
Microbiology 2008; 154(8): 2336-2347 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Adrian F. Alvarez, Héctor M. Alvarez, Rainer Kalscheuer, Marc Wältermann, and Alexander Steinbüchel
Cloning and characterization of a gene involved in triacylglycerol biosynthesis and identification of additional homologous genes in the oleaginous bacterium Rhodococcus opacus PD630
Microbiology 2008; 154(8): 2327-2335 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Xavier Meniche, Célia de Sousa-d'Auria, Bénoit Van-der-Rest, Suresh Bhamidi, Emilie Huc, Hairong Huang, Diane De Paepe, Marielle Tropis, Mike McNeil, Mamadou Daffé, and Christine Houssin
Partial redundancy in the synthesis of the D-arabinose incorporated in the cell wall arabinan of Corynebacterineae
Microbiology 2008; 154(8): 2315-2326 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Katrina E. Traber, Elsie Lee, Sarah Benson, Rebecca Corrigan, Mariela Cantera, Bo Shopsin, and Richard P. Novick
agr function in clinical Staphylococcus aureus isolates
Microbiology 2008; 154(8): 2265-2274 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Da-Kang Shen, Didier Filopon, Hichem Chaker, Stephanie Boullanger, Madiha Derouazi, Benoit Polack, and Bertrand Toussaint
High-cell-density regulation of the Pseudomonas aeruginosa type III secretion system: implications for tryptophan catabolites
Microbiology 2008; 154(8): 2195-2208 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Ghasemali Mohebali and Andrew S. Ball
Biocatalytic desulfurization (BDS) of petrodiesel fuels
Microbiology 2008; 154(8): 2169-2183 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Xhavit Zogaj, Subhra Chakraborty, Jirong Liu, David G. Thanassi, and Karl E. Klose
Characterization of the Francisella tularensis subsp. novicida type IV pilus
Microbiology 2008; 154(7): 2139-2150 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Dongru Qiu, Vonya M. Eisinger, Nathan E. Head, Gerald B. Pier, and Hongwei D. Yu
ClpXP proteases positively regulate alginate overexpression and mucoid conversion in Pseudomonas aeruginosa
Microbiology 2008; 154(7): 2119-2130 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Irena Kukavica-Ibrulj, François Sanschagrin, Ashley Peterson, Marvin Whiteley, Brian Boyle, John MacKay, and Roger C. Levesque
Functional genomics of PycR, a LysR family transcriptional regulator essential for maintenance of Pseudomonas aeruginosa in the rat lung
Microbiology 2008; 154(7): 2106-2118 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Nagarajan Thirunavukkarasu, Mukti Nath Mishra, Stijn Spaepen, Jos Vanderleyden, Carol A. Gross, and Anil K. Tripathi
An extra-cytoplasmic function sigma factor and anti-sigma factor control carotenoid biosynthesis in Azospirillum brasilense
Microbiology 2008; 154(7): 2096-2105 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Hongyue Dang, Xiaoxia Zhang, Jin Sun, Tiegang Li, Zhinan Zhang, and Guanpin Yang
Diversity and spatial distribution of sediment ammonia-oxidizing crenarchaeota in response to estuarine and environmental gradients in the Changjiang Estuary and East China Sea
Microbiology 2008; 154(7): 2084-2095 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Loretta Jackson-Hayes, Terry W. Hill, Darlene M. Loprete, Lauren M. Fay, Barbara S. Gordon, Sonia A. Nkashama, Ravi K. Patel, and Caroline V. Sartain
Two GDP-mannose transporters contribute to hyphal form and cell wall integrity in Aspergillus nidulans
Microbiology 2008; 154(7): 2037-2047 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Luciana Gualdi, Letizia Tagliabue, Stefano Bertagnoli, Teresa Ieranò, Cristina De Castro, and Paolo Landini
Cellulose modulates biofilm formation by counteracting curli-mediated colonization of solid surfaces in Escherichia coli
Microbiology 2008; 154(7): 2017-2024 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Yanjie Li, Lei Zhang, Depeng Wang, Hui Zhou, Haomiao Ouyang, Jia Ming, and Cheng Jin
Deletion of the msdS/AfmsdC gene induces abnormal polarity and septation in Aspergillus fumigatus
Microbiology 2008; 154(7): 1960-1972 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Table]

Julia M.-L. Sung, David H. Lloyd, and Jodi A. Lindsay
Staphylococcus aureus host specificity: comparative genomics of human versus animal isolates by multi-strain microarray
Microbiology 2008; 154(7): 1949-1959 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Ave Tooming-Klunderud, Bjørg Mikalsen, Tom Kristensen, and Kjetill S. Jakobsen
The mosaic structure of the mcyABC operon in Microcystis
Microbiology 2008; 154(7): 1886-1899 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Yukiko Taniuchi, Shinya Yoshikawa, Shin-ichi Maeda, Tatsuo Omata, and Kaori Ohki
Diazotrophy under continuous light in a marine unicellular diazotrophic cyanobacterium, Gloeothece sp. 68DGA
Microbiology 2008; 154(7): 1859-1865 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Suleyman Felek, Matthew B. Lawrenz, and Eric S. Krukonis
The Yersinia pestis autotransporter YapC mediates host cell binding, autoaggregation and biofilm formation
Microbiology 2008; 154(6): 1802-1812 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Satoshi Yuhara, Harunobu Komatsu, Hiroyuki Goto, Yoshiyuki Ohtsubo, Yuji Nagata, and Masataka Tsuda
Pleiotropic roles of iron-responsive transcriptional regulator Fur in Burkholderia multivorans
Microbiology 2008; 154(6): 1763-1774 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Tables]

Naomi E. Kramer, Hester E. Hasper, Patrick T. C. van den Bogaard, Siegfried Morath, Ben de Kruijff, Thomas Hartung, Eddy J. Smid, Eefjan Breukink, Jan Kok, and Oscar P. Kuipers
Increased D-alanylation of lipoteichoic acid and a thickened septum are main determinants in the nisin resistance mechanism of Lactococcus lactis
Microbiology 2008; 154(6): 1755-1762 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Figure]

S. Lohmiller, K. Hantke, S. I. Patzer, and V. Braun
TonB-dependent maltose transport by Caulobacter crescentus
Microbiology 2008; 154(6): 1748-1754 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Table]

Renato León and Guadalupe Espín
flhDC, but not fleQ, regulates flagella biogenesis in Azotobacter vinelandii, and is under AlgU and CydR negative control
Microbiology 2008; 154(6): 1719-1728 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Tables]

Timothy J. Kurtti and Nemat O. Keyhani
Intracellular infection of tick cell lines by the entomopathogenic fungus Metarhizium anisopliae
Microbiology 2008; 154(6): 1700-1709 [Abstract] [Full Text]  
Article supplement(s): [Supplementary videos]

Chiara Cipollina, Joost van den Brink, Pascale Daran-Lapujade, Jack T. Pronk, Danilo Porro, and Johannes H. de Winde
Saccharomyces cerevisiae SFP1: at the crossroads of central metabolism and ribosome biogenesis
Microbiology 2008; 154(6): 1686-1699 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Yun Kang, David T. Nguyen, Mike S. Son, and Tung T. Hoang
The Pseudomonas aeruginosa PsrA responds to long-chain fatty acid signals to regulate the fadBA5 β-oxidation operon
Microbiology 2008; 154(6): 1584-1598 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Gregory L. Challis
Mining microbial genomes for new natural products and biosynthetic pathways
Microbiology 2008; 154(6): 1555-1569 [Abstract] [Full Text]  
Article supplement(s): [Interview with the author]

Michelle A. Hubbard and Susan G. W. Kaminskyj
Rapid tip-directed movement of Golgi equivalents in growing Aspergillus nidulans hyphae suggests a mechanism for delivery of growth-related materials
Microbiology 2008; 154(5): 1544-1553 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Kim-Ly Chhour, Lyn A. Hinds, Elizabeth M. Deane, and Nicholas A. Jacques
The microbiome of the cloacal openings of the urogenital and anal tracts of the tammar wallaby, Macropus eugenii
Microbiology 2008; 154(5): 1535-1543 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Sanjay S. Hiremath, Anuradha Chowdhary, Tusharantak Kowshik, Harbans S. Randhawa, Sheng Sun, and Jianping Xu
Long-distance dispersal and recombination in environmental populations of Cryptococcus neoformans var. grubii from India
Microbiology 2008; 154(5): 1513-1524 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figure]

Dolores Cordoba Cañero and M. Isabel G. Roncero
Influence of the chloride channel of Fusarium oxysporum on extracellular laccase activity and virulence on tomato plants
Microbiology 2008; 154(5): 1474-1481 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figure]

Dimitry Yu. Sorokin, Tatjana P. Tourova, Anne M. Henstra, Alfons J. M. Stams, Erwin A. Galinski, and Gerard Muyzer
Sulfidogenesis under extremely haloalkaline conditions by Desulfonatronospira thiodismutans gen. nov., sp. nov., and Desulfonatronospira delicata sp. nov. – a novel lineage of Deltaproteobacteria from hypersaline soda lakes
Microbiology 2008; 154(5): 1444-1453 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Roland H. Müller, Thore Rohwerder, and Hauke Harms
Degradation of fuel oxygenates and their main intermediates by Aquincola tertiaricarbonis L108
Microbiology 2008; 154(5): 1414-1421 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Miguel Balado, Carlos R. Osorio, and Manuel L. Lemos
Biosynthetic and regulatory elements involved in the production of the siderophore vanchrobactin in Vibrio anguillarum
Microbiology 2008; 154(5): 1400-1413 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Ivan Rychlík, Helena Hradecka, and Marcela Malcova
Salmonella enterica serovar Typhimurium typing by prophage-specific PCR
Microbiology 2008; 154(5): 1384-1389 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Javier F. Mariscotti and Francisco García-del Portillo
Instability of the Salmonella RcsCDB signalling system in the absence of the attenuator IgaA
Microbiology 2008; 154(5): 1372-1383 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Iain C. Sutcliffe, Gary W. Black, and Dean J. Harrington
Bioinformatic insights into the biosynthesis of the Group B carbohydrate in Streptococcus agalactiae
Microbiology 2008; 154(5): 1354-1363 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Cecilia Quiroga, Paul H. Roy, and Daniela Centrón
The S.ma.I2 class C group II intron inserts at integron attC sites
Microbiology 2008; 154(5): 1341-1353 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Germán E. Piñas, Paulo R. Cortes, Andrea G. Albarracín Orio, and José Echenique
Acidic stress induces autolysis by a CSP-independent ComE pathway in Streptococcus pneumoniae
Microbiology 2008; 154(5): 1300-1308 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Jingru Sun, Jennifer Kintner, and Robert V. Schoborg
The host adherens junction molecule nectin-1 is downregulated in Chlamydia trachomatis-infected genital epithelial cells
Microbiology 2008; 154(5): 1290-1299 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Martina A. Friedl, Monika Schmoll, Christian P. Kubicek, and Irina S. Druzhinina
Photostimulation of Hypocrea atroviridis growth occurs due to a cross-talk of carbon metabolism, blue light receptors and response to oxidative stress
Microbiology 2008; 154(4): 1229-1241 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Paul C. Mills, Gary Rowley, Stephen Spiro, Jay C. D. Hinton, and David J. Richardson
A combination of cytochrome c nitrite reductase (NrfA) and flavorubredoxin (NorV) protects Salmonella enterica serovar Typhimurium against killing by NO in anoxic environments
Microbiology 2008; 154(4): 1218-1228 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Jochen Kleemann, Hiroyuki Takahara, Kurt Stüber, and Richard O'Connell
Identification of soluble secreted proteins from appressoria of Colletotrichum higginsianum by analysis of expressed sequence tags
Microbiology 2008; 154(4): 1204-1217 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Jan Hegermann, Sven Halbedel, Roger Dumke, Jörg Regula, Razif R. Gabdoulline, Frank Mayer, Jörg Stülke, and Richard Herrmann
The acidic, glutamine-rich Mpn474 protein of Mycoplasma pneumoniae is surface exposed and covers the complete cell
Microbiology 2008; 154(4): 1185-1192 [Abstract] [Full Text]  
Article supplement(s): [Supplementary material]

Suzanne J. C. Verhaegh, André Streefland, Joy K. Dewnarain, David J. Farrell, Alex van Belkum, and John P. Hays
Age-related genotypic and phenotypic differences in Moraxella catarrhalis isolates from children and adults presenting with respiratory disease in 2001–2002
Microbiology 2008; 154(4): 1178-1184 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Margaret E. Bauer, Kate R. Fortney, Alistair Harrison, Diane M. Janowicz, Robert S. Munson, and Stanley M. Spinola
Identification of Haemophilus ducreyi genes expressed during human infection
Microbiology 2008; 154(4): 1152-1160 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Stewart J. Hinchliffe, Sarah L. Howard, Yahui H. Huang, David J. Clarke, and Brendan W. Wren
The importance of the Rcs phosphorelay in the survival and pathogenesis of the enteropathogenic yersiniae
Microbiology 2008; 154(4): 1117-1131 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Karina Brinkrolf, Svenja Plöger, Sandra Solle, Iris Brune, Svenja S. Nentwich, Andrea T. Hüser, Jörn Kalinowski, Alfred Pühler, and Andreas Tauch
The LacI/GalR family transcriptional regulator UriR negatively controls uridine utilization of Corynebacterium glutamicum by binding to catabolite-responsive element (cre)-like sequences
Microbiology 2008; 154(4): 1068-1081 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Paul Golby, Javier Nunez, Paul J. Cockle, Katie Ewer, Karen Logan, Philip Hogarth, H. Martin Vordermeier, Jason Hinds, R. Glyn Hewinson, and Stephen V. Gordon
Characterization of two in vivo-expressed methyltransferases of the Mycobacterium tuberculosis complex: antigenicity and genetic regulation
Microbiology 2008; 154(4): 1059-1067 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

David P. Fewer, Ave Tooming-Klunderud, Jouni Jokela, Matti Wahlsten, Leo Rouhiainen, Tom Kristensen, Thomas Rohrlack, Kjetill S. Jakobsen, and Kaarina Sivonen
Natural occurrence of microcystin synthetase deletion mutants capable of producing microcystins in strains of the genus Anabaena (Cyanobacteria)
Microbiology 2008; 154(4): 1007-1014 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Jiraporn Jirakkakul, Juntira Punya, Somchai Pongpattanakitshote, Porntip Paungmoung, Namol Vorapreeda, Anuwat Tachaleat, Cheeranun Klomnara, Morakot Tanticharoen, and Supapon Cheevadhanarak
Identification of the nonribosomal peptide synthetase gene responsible for bassianolide synthesis in wood-decaying fungus Xylaria sp. BCC1067
Microbiology 2008; 154(4): 995-1006 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Claire Lewis, Henrieta Skovierova, Gary Rowley, Bronislava Rezuchova, Dagmar Homerova, Andrew Stevenson, Aileen Sherry, Jan Kormanec, and Mark Roberts
Small outer-membrane lipoprotein, SmpA, is regulated by {sigma}E and has a role in cell envelope integrity and virulence of Salmonella enterica serovar Typhimurium
Microbiology 2008; 154(3): 979-988 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Jennifer Vanover, Jingru Sun, Srilekha Deka, Jennifer Kintner, Michelle M. Duffourc, and Robert V. Schoborg
Herpes simplex virus co-infection-induced Chlamydia trachomatis persistence is not mediated by any known persistence inducer or anti-chlamydial pathway
Microbiology 2008; 154(3): 971-978 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Rajan P. Adhikari and Richard P. Novick
Regulatory organization of the staphylococcal sae locus
Microbiology 2008; 154(3): 949-959 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

S. Témoin, S. M. Roche, O. Grépinet, Y. Fardini, and P. Velge
Multiple point mutations in virulence genes explain the low virulence of Listeria monocytogenes field strains
Microbiology 2008; 154(3): 939-948 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Lilian Galbis-Martínez, Marisa Galbis-Martínez, Francisco J. Murillo, and Marta Fontes
An anti-antisigma factor in the response of the bacterium Myxococcus xanthus to blue light
Microbiology 2008; 154(3): 895-904 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Figure]

Martin T. Edwards, Norman K. Fry, and Timothy G. Harrison
Clonal population structure of Legionella pneumophila inferred from allelic profiling
Microbiology 2008; 154(3): 852-864 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Tomoko Iwaki, Haruyuki Iefuji, Yoshikazu Hiraga, Akira Hosomi, Tomotake Morita, Yuko Giga-Hama, and Kaoru Takegawa
Multiple functions of ergosterol in the fission yeast Schizosaccharomyces pombe
Microbiology 2008; 154(3): 830-841 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Leong-Keat Chan, Timothy S. Weber, Rachael M. Morgan-Kiss, and Thomas E. Hanson
A genomic region required for phototrophic thiosulfate oxidation in the green sulfur bacterium Chlorobium tepidum (syn. Chlorobaculum tepidum)
Microbiology 2008; 154(3): 818-829 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Yohei Hizukuri, Seiji Kojima, Toshiharu Yakushi, Ikuro Kawagishi, and Michio Homma
Systematic Cys mutagenesis of FlgI, the flagellar P-ring component of Escherichia coli
Microbiology 2008; 154(3): 810-817 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Karin Förster-Fromme, Ava Chattopadhyay, and Dieter Jendrossek
Biochemical characterization of AtuD from Pseudomonas aeruginosa, the first member of a new subgroup of acyl-CoA dehydrogenases with specificity for citronellyl-CoA
Microbiology 2008; 154(3): 789-796 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figure]

Choong-Min Kang, Seeta Nyayapathy, Jung-Yeon Lee, Joo-Won Suh, and Robert N. Husson
Wag31, a homologue of the cell division protein DivIVA, regulates growth, morphology and polar cell wall synthesis in mycobacteria
Microbiology 2008; 154(3): 725-735 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Steven E. Passmore, Rithy Meas, and Donna L. Marykwas
Analysis of the FliM/FliG motor protein interaction by two-hybrid mutation suppression analysis
Microbiology 2008; 154(3): 714-724 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Michael Niederweis
Nutrient acquisition by mycobacteria
Microbiology 2008; 154(3): 679-692 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Sandeepa M. Eswarappa, Kiran Kumar Panguluri, Michael Hensel, and Dipshikha Chakravortty
The yejABEF operon of Salmonella confers resistance to antimicrobial peptides and contributes to its virulence
Microbiology 2008; 154(2): 666-678 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables and figures]

Jayasimha Rao, Antonio DiGiandomenico, Jason Unger, Yongde Bao, Renata K. Polanowska-Grabowska, and Joanna B. Goldberg
A novel oxidized low-density lipoprotein-binding protein from Pseudomonas aeruginosa
Microbiology 2008; 154(2): 654-665 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Stuart Hunt, Arthur J. G. Moir, Svetomir Tzokov, Per A. Bullough, Peter J. Artymiuk, and Jeffrey Green
The formation and structure of Escherichia coli K-12 haemolysin E pores
Microbiology 2008; 154(2): 633-642 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

C. K. Cote, J. Bozue, K. L. Moody, T. L. DiMezzo, C. E. Chapman, and S. L. Welkos
Analysis of a novel spore antigen in Bacillus anthracis that contributes to spore opsonization
Microbiology 2008; 154(2): 619-632 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Eugenia Silva-Herzog, Franco Ferracci, Michael W. Jackson, Sabrina S. Joseph, and Gregory V. Plano
Membrane localization and topology of the Yersinia pestis YscJ lipoprotein
Microbiology 2008; 154(2): 593-607 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Christina Bronowski, Shirley L. Smith, Kyoko Yokota, John E. Corkill, Helen M. Martin, Barry J. Campbell, Jonathan M. Rhodes, C. Anthony Hart, and Craig Winstanley
A subset of mucosa-associated Escherichia coli isolates from patients with colon cancer, but not Crohn's disease, share pathogenicity islands with urinary pathogenic E. coli
Microbiology 2008; 154(2): 571-583 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Atsushi Iguchi, Tadasuke Ooka, Yoshitoshi Ogura, Asadulghani, Keisuke Nakayama, Gad Frankel, and Tetsuya Hayashi
Genomic comparison of the O-antigen biosynthesis gene clusters of Escherichia coli O55 strains belonging to three distinct lineages
Microbiology 2008; 154(2): 559-570 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Carl Hamsten, Joakim Westberg, Göran Bölske, Roger Ayling, Mathias Uhlén, and Anja Persson
Expression and immunogenicity of six putative variable surface proteins in Mycoplasma mycoides subsp. mycoides SC
Microbiology 2008; 154(2): 539-549 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Wenjun Li, Florence Fenollar, Jean-Marc Rolain, Pierre-Edouard Fournier, Gerhard E. Feurle, Christian Müller, Verena Moos, Thomas Marth, Martin Altwegg, Romana C. Calligaris-Maibach, Thomas Schneider, Federico Biagi, Bernard La Scola, and Didier Raoult
Genotyping reveals a wide heterogeneity of Tropheryma whipplei
Microbiology 2008; 154(2): 521-527 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Paulo Canessa, José Miguel Álvarez, Rubén Polanco, Paulina Bull, and Rafael Vicuña
The copper-dependent ACE1 transcription factor activates the transcription of the mco1 gene from the basidiomycete Phanerochaete chrysosporium
Microbiology 2008; 154(2): 491-499 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figure]

John P. Bowman, Claudio R. Bittencourt, and Tom Ross
Differential gene expression of Listeria monocytogenes during high hydrostatic pressure processing
Microbiology 2008; 154(2): 462-475 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data files]

Sanela Begic and Elizabeth A. Worobec
The role of the Serratia marcescens SdeAB multidrug efflux pump and TolC homologue in fluoroquinolone resistance studied via gene-knockout mutagenesis
Microbiology 2008; 154(2): 454-461 [Abstract] [Full Text]  
Article supplement(s): [Corrigendum]

Xu Peng
Evidence for the horizontal transfer of an integrase gene from a fusellovirus to a pRN-like plasmid within a single strain of Sulfolobus and the implications for plasmid survival
Microbiology 2008; 154(2): 383-391 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

David E. Whitworth and Peter J. A. Cock
Two-component systems of the myxobacteria: structure, diversity and evolutionary relationships
Microbiology 2008; 154(2): 360-372 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Chiara Cipollina, Joost van den Brink, Pascale Daran-Lapujade, Jack T. Pronk, Marina Vai, and Johannes H. de Winde
Revisiting the role of yeast Sfp1 in ribosome biogenesis and cell size control: a chemostat study
Microbiology 2008; 154(1): 337-346 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Yoon-E Choi and Won-Bo Shim
Functional characterization of Fusarium verticillioides CPP1, a gene encoding a putative protein phosphatase 2A catalytic subunit
Microbiology 2008; 154(1): 326-336 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Jennifer M. Hatchel and Mitchell F. Balish
Attachment organelle ultrastructure correlates with phylogeny, not gliding motility properties, in Mycoplasma pneumoniae relatives
Microbiology 2008; 154(1): 286-295 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figure]

Aarti Gautam, Marianne Hathaway, Natalie McClain, Geeta Ramesh, and Ramesh Ramamoorthy
Analysis of the determinants of bba64 (P35) gene expression in Borrelia burgdorferi using a gfp reporter
Microbiology 2008; 154(1): 275-285 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Yuya Tanaka, Naoko Okai, Haruhiko Teramoto, Masayuki Inui, and Hideaki Yukawa
Regulation of the expression of phosphoenolpyruvate : carbohydrate phosphotransferase system (PTS) genes in Corynebacterium glutamicum R
Microbiology 2008; 154(1): 264-274 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Karin Denger, Sonja Weinitschke, Theo H. M. Smits, David Schleheck, and Alasdair M. Cook
Bacterial sulfite dehydrogenases in organotrophic metabolism: separation and identification in Cupriavidus necator H16 and in Delftia acidovorans SPH-1
Microbiology 2008; 154(1): 256-263 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Sunita Sinha, Ole Herman Ambur, Paul R. Langford, Tone Tønjum, and J. Simon Kroll
Reduced DNA binding and uptake in the absence of DsbA1 and DsbA2 of Neisseria meningitidis due to inefficient folding of the outer-membrane secretin PilQ
Microbiology 2008; 154(1): 217-225 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Geraldine Bresolin, Janja Trcek, Siegfried Scherer, and Thilo M. Fuchs
Presence of a functional flagellar cluster Flag-2 and low-temperature expression of flagellar genes in Yersinia enterocolitica W22703
Microbiology 2008; 154(1): 196-206 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Thibaut de Sablet, Yolande Bertin, Marjolaine Vareille, Jean-Pierre Girardeau, Annie Garrivier, Alain P. Gobert, and Christine Martin
Differential expression of stx2 variants in Shiga toxin-producing Escherichia coli belonging to seropathotypes A and C
Microbiology 2008; 154(1): 176-186 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Barbara Baert, Christine Baysse, Sandra Matthijs, and Pierre Cornelis
Multiple phenotypic alterations caused by a c-type cytochrome maturation ccmC gene mutation in Pseudomonas aeruginosa
Microbiology 2008; 154(1): 127-138 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Filipe Santos, Jose L. Vera, René van der Heijden, Graciela Valdez, Willem M. de Vos, Fernando Sesma, and Jeroen Hugenholtz
The complete coenzyme B12 biosynthesis gene cluster of Lactobacillus reuteri CRL1098
Microbiology 2008; 154(1): 81-93 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Kazuo Kobayashi, Ritsuko Kuwana, and Hiromu Takamatsu
kinA mRNA is missing a stop codon in the undomesticated Bacillus subtilis strain ATCC 6051
Microbiology 2008; 154(1): 54-63 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Derek E. Chen, Sheila Podell, John-Demian Sauer, Michele S. Swanson, and Milton H. Saier
The phagosomal nutrient transporter (Pht) family
Microbiology 2008; 154(1): 42-53 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Thomas Hindré, Holger Brüggemann, Carmen Buchrieser, and Yann Héchard
Transcriptional profiling of Legionella pneumophila biofilm cells and the influence of iron on biofilm formation
Microbiology 2008; 154(1): 30-41 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Jesse R. Zaneveld, Diana R. Nemergut, and Rob Knight
Are all horizontal gene transfers created equal? Prospects for mechanism-based studies of HGT patterns
Microbiology 2008; 154(1): 1-15 [Abstract] [Full Text]  
Article supplement(s): [Corrigendum]

Carey-Ann D. Burnham, Sandra E. Shokoples, and Gregory J. Tyrrell
Invasion of HeLa cells by group B streptococcus requires the phosphoinositide-3-kinase signalling pathway and modulates phosphorylation of host-cell Akt and glycogen synthase kinase-3
Microbiology 2007; 153(12): 4240-4252 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Milce Costa, Clayton L. Borges, Alexandre M. Bailão, Gabriela V. Meirelles, Yuri A. Mendonça, Sabrina F. I. M. Dantas, Fabrícia P. de Faria, Maria S. S. Felipe, Eugênia E. W. I. Molinari-Madlum, Maria J. S. Mendes-Giannini, Rogério B. Fiuza, Wellington S. Martins, Maristela Pereira, and Célia M. A. Soares
Transcriptome profiling of Paracoccidioides brasiliensis yeast-phase cells recovered from infected mice brings new insights into fungal response upon host interaction
Microbiology 2007; 153(12): 4194-4207 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

V. Encheva, R. Wait, S. Begum, S. E. Gharbia, and H. N. Shah
Protein expression diversity amongst serovars of Salmonella enterica
Microbiology 2007; 153(12): 4183-4193 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Jae-Gu Seo, Sae W. Park, Hyuk Park, Seo Y. Kim, Young T. Ro, Eungbin Kim, Jin W. Cho, and Young M. Kim
Cloning, characterization and expression of a gene encoding dihydroxyacetone synthase in Mycobacterium sp. strain JC1 DSM 3803
Microbiology 2007; 153(12): 4174-4182 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Fatma Karray, Emmanuelle Darbon, Nathalie Oestreicher, Hélène Dominguez, Karine Tuphile, Josette Gagnat, Marie-Hélène Blondelet-Rouault, Claude Gerbaud, and Jean-Luc Pernodet
Organization of the biosynthetic gene cluster for the macrolide antibiotic spiramycin in Streptomyces ambofaciens
Microbiology 2007; 153(12): 4111-4122 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Material]

Dagmara Jakimowicz, Anna Brzostek, Anna Rumijowska-Galewicz, Paulina Zydek, Alicja Dolzblasz, Aleksandra Smulczyk-Krawczyszyn, Tomasz Zimniak, Lukasz Wojtasz, Anna Zawilak-Pawlik, Agnieszka Kois, Jaroslaw Dziadek, and Jolanta Zakrzewska-Czerwinska
Characterization of the mycobacterial chromosome segregation protein ParB and identification of its target in Mycobacterium smegmatis
Microbiology 2007; 153(12): 4050-4060 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Yasuyuki Kawaharada, Shima Eda, Kiwamu Minamisawa, and Hisayuki Mitsui
A Mesorhizobium loti mutant with reduced glucan content shows defective invasion of its host plant Lotus japonicus
Microbiology 2007; 153(12): 3983-3993 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Mark H. J. Sturme, Christof Francke, Roland J. Siezen, Willem M. de Vos, and Michiel Kleerebezem
Making sense of quorum sensing in lactobacilli: a special focus on Lactobacillus plantarum WCFS1
Microbiology 2007; 153(12): 3939-3947 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Are Klevan, Nicolas J. Tourasse, Fredrik B. Stabell, Anne-Brit Kolstø, and Ole Andreas Økstad
Exploring the evolution of the Bacillus cereus group repeat element bcr1 by comparative genome analysis of closely related strains
Microbiology 2007; 153(11): 3894-3908 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Ryohei Ueno, Volker A. R. Huss, Naoto Urano, and Shugo Watabe
Direct evidence for redundant segmental replacement between multiple 18S rRNA genes in a single Prototheca strain
Microbiology 2007; 153(11): 3879-3893 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Marco J. L. de Groot, Pascale Daran-Lapujade, Bas van Breukelen, Theo A. Knijnenburg, Erik A. F. de Hulster, Marcel J. T. Reinders, Jack T. Pronk, Albert J. R. Heck, and Monique Slijper
Quantitative proteomics and transcriptomics of anaerobic and aerobic yeast cultures reveals post-transcriptional regulation of key cellular processes
Microbiology 2007; 153(11): 3864-3878 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Peter Schierack, Nicole Walk, Katja Reiter, Karl D. Weyrauch, and Lothar H. Wieler
Composition of intestinal Enterobacteriaceae populations of healthy domestic pigs
Microbiology 2007; 153(11): 3830-3837 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Urs Albers, André Tiaden, Thomas Spirig, Denise Al Alam, Sanna M. Goyert, Sophie C. Gangloff, and Hubert Hilbi
Expression of Legionella pneumophila paralogous lipid A biosynthesis genes under different growth conditions
Microbiology 2007; 153(11): 3817-3829 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Khaled A. Aly and Christian Baron
The VirB5 protein localizes to the T-pilus tips in Agrobacterium tumefaciens
Microbiology 2007; 153(11): 3766-3775 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Yun Zhang, Ying-Fei Ma, Su-Wei Qi, Bo Meng, Muhammad Tausif Chaudhry, Si-Qi Liu, and Shuang-Jiang Liu
Responses to arsenate stress by Comamonas sp. strain CNB-1 at genetic and proteomic levels
Microbiology 2007; 153(11): 3713-3721 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Yuuhiko Tanabe, Fumie Kasai, and Makoto M. Watanabe
Multilocus sequence typing (MLST) reveals high genetic diversity and clonal population structure of the toxic cyanobacterium Microcystis aeruginosa
Microbiology 2007; 153(11): 3695-3703 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data] [Corrigendum]

Akiyoshi Higo, Takayuki Suzuki, Masahiko Ikeuchi, and Masayuki Ohmori
Dynamic transcriptional changes in response to rehydration in Anabaena sp. PCC 7120
Microbiology 2007; 153(11): 3685-3694 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Mariam Ibrahim, Pierre Nicolas, Philippe Bessières, Alexander Bolotin, Véronique Monnet, and Rozenn Gardan
A genome-wide survey of short coding sequences in streptococci
Microbiology 2007; 153(11): 3631-3644 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Joël F. Pothier, Florence Wisniewski-Dyé, Michèle Weiss-Gayet, Yvan Moënne-Loccoz, and Claire Prigent-Combaret
Promoter-trap identification of wheat seed extract-induced genes in the plant-growth-promoting rhizobacterium Azospirillum brasilense Sp245
Microbiology 2007; 153(10): 3608-3622 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Stijn van der Veen, Torsten Hain, Jeroen A. Wouters, Hamid Hossain, Willem M. de Vos, Tjakko Abee, Trinad Chakraborty, and Marjon H. J. Wells-Bennik
The heat-shock response of Listeria monocytogenes comprises genes involved in heat shock, cell division, cell wall synthesis, and the SOS response
Microbiology 2007; 153(10): 3593-3607 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Maddalena V. Coppi, Regina A. O'Neil, Ching Leang, Franz Kaufmann, Barbara A. Methé, Kelly P. Nevin, Trevor L. Woodard, Anna Liu, and Derek R. Lovley
Involvement of Geobacter sulfurreducens SfrAB in acetate metabolism rather than intracellular, respiration-linked Fe(III) citrate reduction
Microbiology 2007; 153(10): 3572-3585 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Erin C. Boyle, Nat F. Brown, John H. Brumell, and B. Brett Finlay
Src homology domain 2 adaptors affect adherence of Salmonella enterica serovar Typhimurium to non-phagocytic cells
Microbiology 2007; 153(10): 3517-3526 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Birte Meyer and Jan Kuever
Molecular analysis of the distribution and phylogeny of dissimilatory adenosine-5'-phosphosulfate reductase-encoding genes (aprBA) among sulfur-oxidizing prokaryotes
Microbiology 2007; 153(10): 3478-3498 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Eun-Min Cho, Brett H. Kirkland, Diane J. Holder, and Nemat O. Keyhani
Phage display cDNA cloning and expression analysis of hydrophobins from the entomopathogenic fungus Beauveria (Cordyceps) bassiana
Microbiology 2007; 153(10): 3438-3447 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Evangelina Campos, Cristina Montella, Fernando Garces, Laura Baldoma, Juan Aguilar, and Josefa Badia
Aerobic L-ascorbate metabolism and associated oxidative stress in Escherichia coli
Microbiology 2007; 153(10): 3399-3408 [Abstract] [Full Text]  
Article supplement(s): [Erratum]

Paul Golby, Kim A. Hatch, Joanna Bacon, Rory Cooney, Paul Riley, Jon Allnutt, Jason Hinds, Javier Nunez, Philip D. Marsh, R. Glyn Hewinson, and Stephen V. Gordon
Comparative transcriptomics reveals key gene expression differences between the human and bovine pathogens of the Mycobacterium tuberculosis complex
Microbiology 2007; 153(10): 3323-3336 [Abstract] [Full Text]  
Article supplement(s): [HTML Page - index.htslp]

Jan van Ooyen and Jörg Soppa
Three 2-oxoacid dehydrogenase operons in Haloferax volcanii: expression, deletion mutants and evolution
Microbiology 2007; 153(10): 3303-3313 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Joseph M. Sturino and Todd R. Klaenhammer
Inhibition of bacteriophage replication in Streptococcus thermophilus by subunit poisoning of primase
Microbiology 2007; 153(10): 3295-3302 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Yannick Lequette, Eglantine Rollet, Aurélie Delangle, E. Peter Greenberg, and Jean-Pierre Bohin
Linear osmoregulated periplasmic glucans are encoded by the opgGH locus of Pseudomonas aeruginosa
Microbiology 2007; 153(10): 3255-3263 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Abhignya Subedi, Carles Ubeda, Rajan P. Adhikari, José R. Penadés, and Richard P. Novick
Sequence analysis reveals genetic exchanges and intraspecific spread of SaPI2, a pathogenicity island involved in menstrual toxic shock
Microbiology 2007; 153(10): 3235-3245 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Simon H. Miller, Rachel M. Elliot, John T. Sullivan, and Clive W. Ronson
Host-specific regulation of symbiotic nitrogen fixation in Rhizobium leguminosarum biovar trifolii
Microbiology 2007; 153(9): 3184-3195 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Sylvie Chauvaux, Marie-Laure Rosso, Lionel Frangeul, Céline Lacroix, Laurent Labarre, Angèle Schiavo, Michaël Marceau, Marie-Agnès Dillies, Jeannine Foulon, Jean-Yves Coppée, Claudine Médigue, Michel Simonet, and Elisabeth Carniel
Transcriptome analysis of Yersinia pestis in human plasma: an approach for discovering bacterial genes involved in septicaemic plague
Microbiology 2007; 153(9): 3112-3124 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Nahid Kamal, Nick Dorrell, Aparna Jagannathan, Susan M. Turner, Chrystala Constantinidou, David J. Studholme, Gemma Marsden, Jason Hinds, Ken G. Laing, Brendan W. Wren, and Charles W. Penn
Deletion of a previously uncharacterized flagellar-hook-length control gene fliK modulates the {sigma}54-dependent regulon in Campylobacter jejuni
Microbiology 2007; 153(9): 3099-3111 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Tobias D. Schoep and Keith Gregg
Isolation and characterization of putative Pseudobutyrivibrio ruminis promoters
Microbiology 2007; 153(9): 3071-3080 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figure]

Seiya Watanabe, Ahmed Abu Saleh, Seung Pil Pack, Narayana Annaluru, Tsutomu Kodaki, and Keisuke Makino
Ethanol production from xylose by recombinant Saccharomyces cerevisiae expressing protein-engineered NADH-preferring xylose reductase from Pichia stipitis
Microbiology 2007; 153(9): 3044-3054 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Malgorzata A. Gil, Katherine E. Sherwood, and Julie A. Maupin-Furlow
Transcriptional linkage of Haloferax volcanii proteasomal genes with non-proteasomal gene neighbours including RNase P, MOSC domain and SAM-methyltransferase homologues
Microbiology 2007; 153(9): 3009-3022 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Weili Liang, Alberto Pascual-Montano, Anisia J. Silva, and Jorge A. Benitez
The cyclic AMP receptor protein modulates quorum sensing, motility and multiple genes that affect intestinal colonization in Vibrio cholerae
Microbiology 2007; 153(9): 2964-2975 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Gunnar N. Schroeder, Naja J. Jann, and Hubert Hilbi
Intracellular type III secretion by cytoplasmic Shigella flexneri promotes caspase-1-dependent macrophage cell death
Microbiology 2007; 153(9): 2862-2876 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figure]

Uma Shankar Sagaram, Brian D. Shaw, and Won-Bo Shim
Fusarium verticillioides GAP1, a gene encoding a putative glycolipid-anchored surface protein, participates in conidiation and cell wall structure but not virulence
Microbiology 2007; 153(9): 2850-2861 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Fernando Navarro-García, Adrián Canizalez-Roman, Jorge E. Vidal, and Ma. Isabel Salazar
Intoxication of epithelial cells by plasmid-encoded toxin requires clathrin-mediated endocytosis
Microbiology 2007; 153(9): 2828-2838 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Figure]

Tomoko Iwaki, Masayuki Onishi, Masaru Ikeuchi, Ayako Kita, Reiko Sugiura, Yuko Giga-Hama, Yasuhisa Fukui, and Kaoru Takegawa
Essential roles of class E Vps proteins for sorting into multivesicular bodies in Schizosaccharomyces pombe
Microbiology 2007; 153(8): 2753-2764 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Material]

Maria Lluch-Senar, Miquel Vallmitjana, Enrique Querol, and Jaume Piñol
A new promoterless reporter vector reveals antisense transcription in Mycoplasma genitalium
Microbiology 2007; 153(8): 2743-2752 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Thuy T. Pham, Deborah Jacobs-Sera, Marisa L. Pedulla, Roger W. Hendrix, and Graham F. Hatfull
Comparative genomic analysis of mycobacteriophage Tweety: evolutionary insights and construction of compatible site-specific integration vectors for mycobacteria
Microbiology 2007; 153(8): 2711-2723 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Gil Shalom, Jonathan G. Shaw, and Mark S. Thomas
In vivo expression technology identifies a type VI secretion system locus in Burkholderia pseudomallei that is induced upon invasion of macrophages
Microbiology 2007; 153(8): 2689-2699 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Material]

Nathan Jeffery, Robin B. Gasser, Penelope A. Steer, and Amir H. Noormohammadi
Classification of Mycoplasma synoviae strains using single-strand conformation polymorphism and high-resolution melting-curve analysis of the vlhA gene single-copy region
Microbiology 2007; 153(8): 2679-2688 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

R. H. Orsi, D. R. Ripoll, M. Yeung, K. K. Nightingale, and M. Wiedmann
Recombination and positive selection contribute to evolution of Listeria monocytogenes inlA
Microbiology 2007; 153(8): 2666-2678 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Tables]

Emma Griffiths and Radhey S. Gupta
Phylogeny and shared conserved inserts in proteins provide evidence that Verrucomicrobia are the closest known free-living relatives of chlamydiae
Microbiology 2007; 153(8): 2648-2654 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Material]

Takashi Yamada, Takeru Kawasaki, Shoko Nagata, Akiko Fujiwara, Shoji Usami, and Makoto Fujie
New bacteriophages that infect the phytopathogen Ralstonia solanacearum
Microbiology 2007; 153(8): 2630-2639 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Chao-Jen Shih and Mei-Chin Lai
Analysis of the AAA+ chaperone clpB gene and stress-response expression in the halophilic methanogenic archaeon Methanohalophilus portucalensis
Microbiology 2007; 153(8): 2572-2583 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figure]

Masayuki Inui, Masako Suda, Shohei Okino, Hiroshi Nonaka, László G. Puskás, Alain A. Vertès, and Hideaki Yukawa
Transcriptional profiling of Corynebacterium glutamicum metabolism during organic acid production under oxygen deprivation conditions
Microbiology 2007; 153(8): 2491-2504 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Flavie Pouillot, Corinne Fayolle, and Elisabeth Carniel
A putative DNA adenine methyltransferase is involved in Yersinia pseudotuberculosis pathogenicity
Microbiology 2007; 153(8): 2426-2434 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Sebastian F. Zenk, David Stabat, Julie L. Hodgkinson, Andreas K. J. Veenendaal, Steven Johnson, and Ariel J. Blocker
Identification of minor inner-membrane components of the Shigella type III secretion system ‘needle complex’
Microbiology 2007; 153(8): 2405-2415 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Material]

Silvia Vilches, Rocío Canals, Markus Wilhelms, Maria Teresa Saló, Yuriy A. Knirel, Evgeny Vinogradov, Susana Merino, and Juan M. Tomás
Mesophilic Aeromonas UDP-glucose pyrophosphorylase (GalU) mutants show two types of lipopolysaccharide structures and reduced virulence
Microbiology 2007; 153(8): 2393-2404 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Kathleen M. Yeater, Jyotsna Chandra, Georgina Cheng, Pranab K. Mukherjee, Xiaomin Zhao, Sandra L. Rodriguez-Zas, Kurt E. Kwast, Mahmoud A. Ghannoum, and Lois L. Hoyer
Temporal analysis of Candida albicans gene expression during biofilm development
Microbiology 2007; 153(8): 2373-2385 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Stanislav Forman, Michal J. Nagiec, Jennifer Abney, Robert D. Perry, and Jacqueline D. Fetherston
Analysis of the aerobactin and ferric hydroxamate uptake systems of Yersinia pestis
Microbiology 2007; 153(7): 2332-2341 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Material]

Glen C. Ulett, Amanda N. Mabbett, Khe C. Fung, Richard I. Webb, and Mark A. Schembri
The role of F9 fimbriae of uropathogenic Escherichia coli in biofilm formation
Microbiology 2007; 153(7): 2321-2331 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Sean P. Riley, Tomasz Bykowski, Kelly Babb, Kate von Lackum, and Brian Stevenson
Genetic and physiological characterization of the Borrelia burgdorferi ORF BB0374-pfs-metK-luxS operon
Microbiology 2007; 153(7): 2304-2311 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Erlend Bore, Solveig Langsrud, Øyvind Langsrud, Tone Mari Rode, and Askild Holck
Acid-shock responses in Staphylococcus aureus investigated by global gene expression analysis
Microbiology 2007; 153(7): 2289-2303 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

P. Aaron Kirkland, Christopher J. Reuter, and Julie A. Maupin-Furlow
Effect of proteasome inhibitor clasto-lactacystin-beta-lactone on the proteome of the haloarchaeon Haloferax volcanii
Microbiology 2007; 153(7): 2271-2280 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Material]

Patrick M. Lucas, Victor S. Blancato, Olivier Claisse, Christian Magni, Juke S. Lolkema, and Aline Lonvaud-Funel
Agmatine deiminase pathway genes in Lactobacillus brevis are linked to the tyrosine decarboxylation operon in a putative acid resistance locus
Microbiology 2007; 153(7): 2221-2230 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Evan Burkala, Jacqueline M. Reimers, Karen H. Schmidt, Nick Davis, Ping Wei, and Barbara E. Wright
Secondary structures as predictors of mutation potential in the lacZ gene of Escherichia coli
Microbiology 2007; 153(7): 2180-2189 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Figure]

William J. Kenyon, Kristy L. Nicholson, Bronislava Rezuchova, Dagmar Homerova, Francisco Garcia-del Portillo, B. Brett Finlay, Mark J. Pallen, Jan Kormanec, and Michael P. Spector
{sigma}s-Dependent carbon-starvation induction of pbpG (PBP 7) is required for the starvation-stress response in Salmonella enterica serovar Typhimurium
Microbiology 2007; 153(7): 2148-2158 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Material]

Xiu-Lan Chen, Bin-Bin Xie, Jing-Tao Lu, Hai-Lun He, and Yuzhong Zhang
A novel type of subtilase from the psychrotolerant bacterium Pseudoalteromonas sp. SM9913: catalytic and structural properties of deseasin MCP-01
Microbiology 2007; 153(7): 2116-2125 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Julian Ihssen, Elena Grasselli, Claudio Bassin, Patrice François, Jean-Claude Piffaretti, Wolfgang Köster, Jacques Schrenzel, and Thomas Egli
Comparative genomic hybridization and physiological characterization of environmental isolates indicate that significant (eco-)physiological properties are highly conserved in the species Escherichia coli
Microbiology 2007; 153(7): 2052-2066 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Material]

Birte Meyer and Jan Kuever
Phylogeny of the alpha and beta subunits of the dissimilatory adenosine-5'-phosphosulfate (APS) reductase from sulfate-reducing prokaryotes – origin and evolution of the dissimilatory sulfate-reduction pathway
Microbiology 2007; 153(7): 2026-2044 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Ying Zhang, Ian P. Adams, and Colin Ratledge
Malic enzyme: the controlling activity for lipid production? Overexpression of malic enzyme in Mucor circinelloides leads to a 2.5-fold increase in lipid accumulation
Microbiology 2007; 153(7): 2013-2025 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Marius Vital, Hans Peter Füchslin, Frederik Hammes, and Thomas Egli
Growth of Vibrio cholerae O1 Ogawa Eltor in freshwater
Microbiology 2007; 153(7): 1993-2001 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Rita V. M. Rio, Matthias Anderegg, and Joerg Graf
Characterization of a catalase gene from Aeromonas veronii, the digestive-tract symbiont of the medicinal leech
Microbiology 2007; 153(6): 1897-1906 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Kenji Arakawa, Susumu Mochizuki, Kohei Yamada, Takenori Noma, and Haruyasu Kinashi
{gamma}-Butyrolactone autoregulator-receptor system involved in lankacidin and lankamycin production and morphological differentiation in Streptomyces rochei
Microbiology 2007; 153(6): 1817-1827 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Bradley L. Dubbels, Luis A. Sayavedra-Soto, and Daniel J. Arp
Butane monooxygenase of ‘Pseudomonas butanovora’: purification and biochemical characterization of a terminal-alkane hydroxylating diiron monooxygenase
Microbiology 2007; 153(6): 1808-1816 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Hans Wildschutte and Jeffrey G. Lawrence
Differential Salmonella survival against communities of intestinal amoebae
Microbiology 2007; 153(6): 1781-1789 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figure]

Luis F. Larrondo, Paulo Canessa, Francisco Melo, Rubén Polanco, and Rafael Vicuña
Cloning and characterization of the genes encoding the high-affinity iron-uptake protein complex Fet3/Ftr1 in the basidiomycete Phanerochaete chrysosporium
Microbiology 2007; 153(6): 1772-1780 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Michael L. Kotewicz, Scott A. Jackson, J. Eugene LeClerc, and Thomas A. Cebula
Optical maps distinguish individual strains of Escherichia coli O157 : H7
Microbiology 2007; 153(6): 1720-1733 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

M. T. Hedayati, A. C. Pasqualotto, P. A. Warn, P. Bowyer, and D. W. Denning
Aspergillus flavus: human pathogen, allergen and mycotoxin producer
Microbiology 2007; 153(6): 1677-1692 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Jorik Arts, Arjan de Groot, Geneviève Ball, Eric Durand, Mohammed El Khattabi, Alain Filloux, Jan Tommassen, and Margot Koster
Interaction domains in the Pseudomonas aeruginosa type II secretory apparatus component XcpS (GspF)
Microbiology 2007; 153(5): 1582-1592 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Guokui Qin, Lizhi Zhu, Xiulan Chen, Peng George Wang, and Yuzhong Zhang
Structural characterization and ecological roles of a novel exopolysaccharide from the deep-sea psychrotolerant bacterium Pseudoalteromonas sp. SM9913
Microbiology 2007; 153(5): 1566-1572 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

M. Labbate, Y. Boucher, M. J. Joss, C. A. Michael, M. R. Gillings, and H. W. Stokes
Use of chromosomal integron arrays as a phylogenetic typing system for Vibrio cholerae pandemic strains
Microbiology 2007; 153(5): 1488-1498 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Joanna Bacon, Lynn G. Dover, Kim A. Hatch, Yi Zhang, Jessica M. Gomes, Sharon Kendall, Lorenz Wernisch, Neil G. Stoker, Philip D. Butcher, Gurdyal S. Besra, and Philip D. Marsh
Lipid composition and transcriptional response of Mycobacterium tuberculosis grown under iron-limitation in continuous culture: identification of a novel wax ester
Microbiology 2007; 153(5): 1435-1444 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Manuel Wolpert, Bertolt Gust, Bernd Kammerer, and Lutz Heide
Effects of deletions of mbtH-like genes on clorobiocin biosynthesis in Streptomyces coelicolor
Microbiology 2007; 153(5): 1413-1423 [Abstract] [Full Text]  
Article supplement(s): [Supplemenatry Table]

Sylvie Lautru, Daniel Oves-Costales, Jean-Luc Pernodet, and Gregory L. Challis
MbtH-like protein-mediated cross-talk between non-ribosomal peptide antibiotic and siderophore biosynthetic pathways in Streptomyces coelicolor M145
Microbiology 2007; 153(5): 1405-1412 [Abstract] [Full Text]  
Article supplement(s): [Supplemenatry Table]

Nai-Hua Hsiao, Johannes Söding, Dirk Linke, Corinna Lange, Christian Hertweck, Wolfgang Wohlleben, and Eriko Takano
ScbA from Streptomyces coelicolor A3(2) has homology to fatty acid synthases and is able to synthesize {gamma}-butyrolactones
Microbiology 2007; 153(5): 1394-1404 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Ave Tooming-Klunderud, Thomas Rohrlack, Kamran Shalchian-Tabrizi, Tom Kristensen, and Kjetill S. Jakobsen
Structural analysis of a non-ribosomal halogenated cyclic peptide and its putative operon from Microcystis: implications for evolution of cyanopeptolins
Microbiology 2007; 153(5): 1382-1393 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures] [Corrigendum]

Peter Ø. Jensen, Thomas Bjarnsholt, Richard Phipps, Thomas B. Rasmussen, Henrik Calum, Lars Christoffersen, Claus Moser, Paul Williams, Tacjana Pressler, Michael Givskov, and Niels Høiby
Rapid necrotic killing of polymorphonuclear leukocytes is caused by quorum-sensing-controlled production of rhamnolipid by Pseudomonas aeruginosa
Microbiology 2007; 153(5): 1329-1338 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Movie]

Moshe Shemesh, Avshalom Tam, and Doron Steinberg
Differential gene expression profiling of Streptococcus mutans cultured under biofilm and planktonic conditions
Microbiology 2007; 153(5): 1307-1317 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Xiuhua Pang, Phong Vu, Thomas F. Byrd, Saleena Ghanny, Patricia Soteropoulos, Galina V. Mukamolova, Shiping Wu, Buka Samten, and Susan T. Howard
Evidence for complex interactions of stress-associated regulons in an mprAB deletion mutant of Mycobacterium tuberculosis
Microbiology 2007; 153(4): 1229-1242 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Katsuhiko Amimoto, Taichi Noro, Eiji Oishi, and Mitsugu Shimizu
A novel toxin homologous to large clostridial cytotoxins found in culture supernatant of Clostridium perfringens type C
Microbiology 2007; 153(4): 1198-1206 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figure]

Robert J. Owen and Jacqueline Xerry
Geographical conservation of short inserts in the signal and middle regions of the Helicobacter pylori vacuolating cytotoxin gene
Microbiology 2007; 153(4): 1176-1186 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Si-Sun Choi, Yoon-Ah Hur, David H. Sherman, and Eung-Soo Kim
Isolation of the biosynthetic gene cluster for tautomycetin, a linear polyketide T cell-specific immunomodulator from Streptomyces sp. CK4412
Microbiology 2007; 153(4): 1095-1102 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Hideaki Yukawa, Crispinus A. Omumasaba, Hiroshi Nonaka, Péter Kós, Naoko Okai, Nobuaki Suzuki, Masako Suda, Yota Tsuge, Junko Watanabe, Yoko Ikeda, Alain A. Vertès, and Masayuki Inui
Comparative analysis of the Corynebacterium glutamicum group and complete genome sequence of strain R
Microbiology 2007; 153(4): 1042-1058 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Tables]

J. G. Malone, R. Williams, M. Christen, U. Jenal, A. J. Spiers, and P. B. Rainey
The structure–function relationship of WspR, a Pseudomonas fluorescens response regulator with a GGDEF output domain
Microbiology 2007; 153(4): 980-994 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Erlend Bore, Michel Hébraud, Ingrid Chafsey, Christophe Chambon, Camilla Skjæret, Birgitte Moen, Trond Møretrø, Øyvind Langsrud, Knut Rudi, and Solveig Langsrud
Adapted tolerance to benzalkonium chloride in Escherichia coli K-12 studied by transcriptome and proteome analyses
Microbiology 2007; 153(4): 935-946 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Li-Fong Lee, Yueh-Jung Chen, Ralph Kirby, Chi Chen, and Carton W. Chen
A multidrug efflux system is involved in colony growth in Streptomyces lividans
Microbiology 2007; 153(4): 924-934 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figure]

Ann-Marie Patch and Stephen J. Aves
Fingerprinting fission yeast: polymorphic markers for molecular genetic analysis of Schizosaccharomyces pombe strains
Microbiology 2007; 153(3): 887-897 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Siew Leng Tai, Ishtar Snoek, Marijke A. H. Luttik, Marinka J. H. Almering, Michael C. Walsh, Jack T. Pronk, and Jean-Marc Daran
Correlation between transcript profiles and fitness of deletion mutants in anaerobic chemostat cultures of Saccharomyces cerevisiae
Microbiology 2007; 153(3): 877-886 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Pierre Germon, David Roche, Sandrine Melo, Sandrine Mignon-Grasteau, Ulrich Dobrindt, Jörg Hacker, Catherine Schouler, and Maryvonne Moulin-Schouleur
tDNA locus polymorphism and ecto-chromosomal DNA insertion hot-spots are related to the phylogenetic group of Escherichia coli strains
Microbiology 2007; 153(3): 826-837 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Joanne M. Neary, Amanda Powell, Lyndsey Gordon, Claire Milne, Fiona Flett, Barrie Wilkinson, Colin P. Smith, and Jason Micklefield
An asparagine oxygenase (AsnO) and a 3-hydroxyasparaginyl phosphotransferase (HasP) are involved in the biosynthesis of calcium-dependent lipopeptide antibiotics
Microbiology 2007; 153(3): 768-776 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Anna O. Avrova, Stephen C. Whisson, Leighton Pritchard, Eduard Venter, Sergio De Luca, Ingo Hein, and Paul R. J. Birch
A novel non-protein-coding infection-specific gene family is clustered throughout the genome of Phytophthora infestans
Microbiology 2007; 153(3): 747-759 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Tables and Figure]

Yaxin Li, Guixia Hao, Cheryl D. Galvani, Yizhi Meng, Leonardo De La Fuente, H. C. Hoch, and Thomas J. Burr
Type I and type IV pili of Xylella fastidiosa affect twitching motility, biofilm formation and cell–cell aggregation
Microbiology 2007; 153(3): 719-726 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Movie]

Shan Goh, Peh Fern Ong, Keang Peng Song, Thomas V. Riley, and Barbara J. Chang
The complete genome sequence of Clostridium difficile phage {phi}C2 and comparisons to {phi}CD119 and inducible prophages of CD630
Microbiology 2007; 153(3): 676-685 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Mitsuo Ogura, Kensuke Tsukahara, Kentaro Hayashi, and Teruo Tanaka
The Bacillus subtilis NatK–NatR two-component system regulates expression of the natAB operon encoding an ABC transporter for sodium ion extrusion
Microbiology 2007; 153(3): 667-675 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Figure]

Ioannis Serafimidis, Gareth Bloomfield, Jason Skelton, Al Ivens, and Robert R. Kay
A new environmentally resistant cell type from Dictyostelium
Microbiology 2007; 153(2): 619-630 [Abstract] [Full Text]  
Article supplement(s): [Supplementary movies and tables]

Liang Ran, Fang Huang, Martin Ekman, Johan Klint, and Birgitta Bergman
Proteomic analyses of the photoauto- and diazotrophically grown cyanobacterium Nostoc sp. PCC 73102
Microbiology 2007; 153(2): 608-618 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Masayuki Murata, Yoshinao Azuma, Koshiro Miura, Mohd. Akhlakur Rahman, Minenosuke Matsutani, Masahiro Aoyama, Harumi Suzuki, Kazuro Sugi, and Mutsunori Shirai
Chlamydial SET domain protein functions as a histone methyltransferase
Microbiology 2007; 153(2): 585-592 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Stuart C. G. Rison, Jens Mattow, Peter R. Jungblut, and Neil G. Stoker
Experimental determination of translational starts using peptide mass mapping and tandem mass spectrometry within the proteome of Mycobacterium tuberculosis
Microbiology 2007; 153(2): 521-528 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Alexandra K. Marr, Joerg Overhage, Manjeet Bains, and Robert E. W. Hancock
The Lon protease of Pseudomonas aeruginosa is induced by aminoglycosides and is involved in biofilm formation and motility
Microbiology 2007; 153(2): 474-482 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Akio Tani, Jittima Charoenpanich, Terumi Mori, Mayuko Takeichi, Kazuhide Kimbara, and Fusako Kawai
Structure and conservation of a polyethylene glycol-degradative operon in sphingomonads
Microbiology 2007; 153(2): 338-346 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Aina Solà, Paula Jouhten, Hannu Maaheimo, Francesc Sánchez-Ferrando, Thomas Szyperski, and Pau Ferrer
Metabolic flux profiling of Pichia pastoris grown on glycerol/methanol mixtures in chemostat cultures at low and high dilution rates
Microbiology 2007; 153(1): 281-290 [Abstract] [Full Text]  
Article supplement(s): [Errata] [Supplementary Tables]

Valerie Hughes, Stuart Smith, Alfredo Garcia-Sanchez, Jill Sales, and Karen Stevenson
Proteomic comparison of Mycobacterium avium subspecies paratuberculosis grown in vitro and isolated from clinical cases of ovine paratuberculosis
Microbiology 2007; 153(1): 196-206 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Rolf-Michael Wittich and Peter Wolff
Growth of the genetically engineered strain Cupriavidus necator RW112 with chlorobenzoates and technical chlorobiphenyls
Microbiology 2007; 153(1): 186-195 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Table]

Liliana Vitorino, Ivo M. Chelo, Fatima Bacellar, and Líbia Zé-Zé
Rickettsiae phylogeny: a multigenic approach
Microbiology 2007; 153(1): 160-168 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Table]

S. López-Gomollón, J. A. Hernández, C. P. Wolk, M. L. Peleato, and M. F. Fillat
Expression of furA is modulated by NtcA and strongly enhanced in heterocysts of Anabaena sp. PCC 7120
Microbiology 2007; 153(1): 42-50 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figure]

Kristin L. Tangen, Won Hee Jung, Anita P. Sham, Tianshun Lian, and James W. Kronstad
The iron- and cAMP-regulated gene SIT1 influences ferrioxamine B utilization, melanization and cell wall structure in Cryptococcus neoformans
Microbiology 2007; 153(1): 29-41 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data] [Corrigendum]

James Matsunaga, Kristian Werneid, Richard L. Zuerner, Ami Frank, and David A. Haake
LipL46 is a novel surface-exposed lipoprotein expressed during leptospiral dissemination in the mammalian host
Microbiology 2006; 152(12): 3777-3786 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Stephan A. Frye, Reza Assalkhou, Richard F. Collins, Robert C. Ford, Christoffer Petersson, Jeremy P. Derrick, and Tone Tønjum
Topology of the outer-membrane secretin PilQ from Neisseria meningitidis
Microbiology 2006; 152(12): 3751-3764 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Julie C. Dunning Hotopp, Renata Grifantini, Nikhil Kumar, Yih Ling Tzeng, Derrick Fouts, Elisabetta Frigimelica, Monia Draghi, Marzia Monica Giuliani, Rino Rappuoli, David S. Stephens, Guido Grandi, and Hervé Tettelin
Comparative genomics of Neisseria meningitidis: core genome, islands of horizontal transfer and pathogen-specific genes
Microbiology 2006; 152(12): 3733-3749 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Ashok Varma, Shaoxi Wu, Ningru Guo, Wanqing Liao, Guxia Lu, Anshen Li, Yonglin Hu, Glenn Bulmer, and Kyung J. Kwon-Chung
Identification of a novel gene, URE2, that functionally complements a urease-negative clinical strain of Cryptococcus neoformans
Microbiology 2006; 152(12): 3723-3731 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Alex Olvera, Marta Cerdà-Cuéllar, and Virginia Aragon
Study of the population structure of Haemophilus parasuis by multilocus sequence typing
Microbiology 2006; 152(12): 3683-3690 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Michael J. Lodes, Heather Secrist, Darin R. Benson, Shyian Jen, Kurt D. Shanebeck, Jeffrey Guderian, Jean-François Maisonneuve, Ajay Bhatia, David Persing, Sheila Patrick, and Yasir A. W. Skeiky
Variable expression of immunoreactive surface proteins of Propionibacterium acnes
Microbiology 2006; 152(12): 3667-3681 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Marta Marques, Dominik Mojzita, Maria A. Amorim, Teresa Almeida, Stefan Hohmann, Pedro Moradas-Ferreira, and Vítor Costa
The Pep4p vacuolar proteinase contributes to the turnover of oxidized proteins but PEP4 overexpression is not sufficient to increase chronological lifespan in Saccharomyces cerevisiae
Microbiology 2006; 152(12): 3595-3605 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Akihiko Terada, Atsushi Yuasa, Takashi Kushimoto, Satoshi Tsuneda, Akio Katakai, and Masao Tamada
Bacterial adhesion to and viability on positively charged polymer surfaces
Microbiology 2006; 152(12): 3575-3583 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Yuhui Sun, Hui Hong, Markiyan Samborskyy, Tatiana Mironenko, Peter F. Leadlay, and Stephen F. Haydock
Organization of the biosynthetic gene cluster in Streptomyces sp. DSM 4137 for the novel neuroprotectant polyketide meridamycin
Microbiology 2006; 152(12): 3507-3515 [Abstract] [Full Text]  
Article supplement(s): [Corrigendum]

Kazunari Kamachi, Masahiro Sota, Yuji Tamai, Noriyo Nagata, Toshifumi Konda, Toshiro Inoue, Eva M. Top, and Yoshichika Arakawa
Plasmid pBP136 from Bordetella pertussis represents an ancestral form of IncP-1beta plasmids without accessory mobile elements
Microbiology 2006; 152(12): 3477-3484 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Stanislav Forman, Alexander G. Bobrov, Olga Kirillina, Susannah K. Craig, Jennifer Abney, Jacqueline D. Fetherston, and Robert D. Perry
Identification of critical amino acid residues in the plague biofilm Hms proteins
Microbiology 2006; 152(11): 3399-3410 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Janina P. Lewis, Konrad Plata, Fan Yu, Adriana Rosato, and Cecilia Anaya
Transcriptional organization, regulation and role of the Porphyromonas gingivalis W83 hmu haemin-uptake locus
Microbiology 2006; 152(11): 3367-3382 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Nicole Popp, Michael Schlömann, and Margit Mau
Bacterial diversity in the active stage of a bioremediation system for mineral oil hydrocarbon-contaminated soils
Microbiology 2006; 152(11): 3291-3304 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

David M. Gordon and Claire L. O'Brien
Bacteriocin diversity and the frequency of multiple bacteriocin production in Escherichia coli
Microbiology 2006; 152(11): 3239-3244 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Jos Boekhorst, Michiel Wels, Michiel Kleerebezem, and Roland J. Siezen
The predicted secretome of Lactobacillus plantarum WCFS1 sheds light on interactions with its environment
Microbiology 2006; 152(11): 3175-3183 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Amy M. Wiles, Houjian Cai, Fred Naider, and Jeffrey M. Becker
Nutrient regulation of oligopeptide transport in Saccharomyces cerevisiae
Microbiology 2006; 152(10): 3133-3145 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Data]

Xiao-Lian Yuan, Coenie Goosen, Harrie Kools, Marc J. E. C. van der Maarel, Cees A. M. J. J van den Hondel, Lubbert Dijkhuizen, and Arthur F. J. Ram
Database mining and transcriptional analysis of genes encoding inulin-modifying enzymes of Aspergillus niger
Microbiology 2006; 152(10): 3061-3073 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Mark de Been, Christof Francke, Roy Moezelaar, Tjakko Abee, and Roland J. Siezen
Comparative analysis of two-component signal transduction systems of Bacillus cereus, Bacillus thuringiensis and Bacillus anthracis
Microbiology 2006; 152(10): 3035-3048 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Jittima Charoenpanich, Akio Tani, Naoko Moriwaki, Kazuhide Kimbara, and Fusako Kawai
Dual regulation of a polyethylene glycol degradative operon by AraC-type and GalR-type regulators in Sphingopyxis macrogoltabida strain 103
Microbiology 2006; 152(10): 3025-3034 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Eun-Min Cho, Drion Boucias, and Nemat O. Keyhani
EST analysis of cDNA libraries from the entomopathogenic fungus Beauveria (Cordyceps) bassiana. II. Fungal cells sporulating on chitin and producing oosporein
Microbiology 2006; 152(9): 2855-2864 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Data]

Eun-Min Cho, Li Liu, William Farmerie, and Nemat O. Keyhani
EST analysis of cDNA libraries from the entomopathogenic fungus Beauveria (Cordyceps) bassiana. I. Evidence for stage-specific gene expression in aerial conidia, in vitro blastospores and submerged conidia
Microbiology 2006; 152(9): 2843-2854 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Data]

Julie Laliberté and Simon Labbé
Mechanisms of copper loading on the Schizosaccharomyces pombe copper amine oxidase 1 expressed in Saccharomyces cerevisiae
Microbiology 2006; 152(9): 2819-2830 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Anthony S. Haines, Parveen Akhtar, Elton R. Stephens, Karen Jones, Christopher M. Thomas, Caroline D. Perkins, Jacqueline R. Williams, Martin J. Day, and John C. Fry
Plasmids from freshwater environments capable of IncQ retrotransfer are diverse and include pQKH54, a new IncP-1 subgroup archetype
Microbiology 2006; 152(9): 2689-2701 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Peter Kuhnert and Bozena M. Korczak
Prediction of whole-genome DNA–DNA similarity, determination of G+C content and phylogenetic analysis within the family Pasteurellaceae by multilocus sequence analysis (MLSA)
Microbiology 2006; 152(9): 2537-2548 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Virginia S. Lioy, M. Teresa Martín, Ana G. Camacho, Rudi Lurz, Haike Antelmann, Michael Hecker, Ed Hitchin, Yvonne Ridge, Jerry M. Wells, and Juan C. Alonso
pSM19035-encoded {zeta} toxin induces stasis followed by death in a subpopulation of cells
Microbiology 2006; 152(8): 2365-2379 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Michael J. Dougherty and Diana M. Downs
A connection between iron–sulfur cluster metabolism and the biosynthesis of 4-amino-5-hydroxymethyl-2-methylpyrimidine pyrophosphate in Salmonella enterica
Microbiology 2006; 152(8): 2345-2353 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Veeranki Venkata Dasu, Yuji Nakada, Mayumi Ohnishi-Kameyama, Keitarou Kimura, and Yoshifumi Itoh
Characterization and a role of Pseudomonas aeruginosa spermidine dehydrogenase in polyamine catabolism
Microbiology 2006; 152(8): 2265-2272 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Teena Mehta, Susan E. Childers, Richard Glaven, Derek R. Lovley, and Tünde Mester
A putative multicopper protein secreted by an atypical type II secretion system involved in the reduction of insoluble electron acceptors in Geobacter sulfurreducens
Microbiology 2006; 152(8): 2257-2264 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Lauren M. Junker, Joseph E. Peters, and Anthony G. Hay
Global analysis of candidate genes important for fitness in a competitive biofilm using DNA-array-based transposon mapping
Microbiology 2006; 152(8): 2233-2245 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Alessandro G. Franchini and Thomas Egli
Global gene expression in Escherichia coli K-12 during short-term and long-term adaptation to glucose-limited continuous culture conditions
Microbiology 2006; 152(7): 2111-2127 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Stephanie J. Clegg, Wenjing Jia, and Jeffrey A. Cole
Role of the Escherichia coli nitrate transport protein, NarU, in survival during severe nutrient starvation and slow growth
Microbiology 2006; 152(7): 2091-2100 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Gaël Erauso, Kenneth M. Stedman, Harmen J. G. van de Werken, Wolfram Zillig, and John van der Oost
Two novel conjugative plasmids from a single strain of Sulfolobus
Microbiology 2006; 152(7): 1951-1968 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figure]

Rie Hirota-Mamoto, Ryoko Nagai, Shinjiro Tachibana, Masaaki Yasuda, Akio Tani, Kazuhide Kimbara, and Fusako Kawai
Cloning and expression of the gene for periplasmic poly(vinyl alcohol) dehydrogenase from Sphingomonas sp. strain 113P3, a novel-type quinohaemoprotein alcohol dehydrogenase
Microbiology 2006; 152(7): 1941-1949 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figure]

Jacob Romano, Guy Nimrod, Nir Ben-Tal, Yona Shadkchan, Koti Baruch, Haim Sharon, and Nir Osherov
Disruption of the Aspergillus fumigatus ECM33 homologue results in rapid conidial germination, antifungal resistance and hypervirulence
Microbiology 2006; 152(7): 1919-1928 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Data]

Klaus Nüsslein, Lachelle Arnt, Jason Rennie, Cullen Owens, and Gregory N. Tew
Broad-spectrum antibacterial activity by a novel abiogenic peptide mimic
Microbiology 2006; 152(7): 1913-1918 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Rubella S. Goswami, Jin-Rong Xu, Frances Trail, Karen Hilburn, and H. Corby Kistler
Genomic analysis of host–pathogen interaction between Fusarium graminearum and wheat during early stages of disease development
Microbiology 2006; 152(6): 1877-1890 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Richard A. Slayden, Dennis L. Knudson, and John T. Belisle
Identification of cell cycle regulators in Mycobacterium tuberculosis by inhibition of septum formation and global transcriptional analysis
Microbiology 2006; 152(6): 1789-1797 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Tables]

Janet C. Waterhouse and Roy R. B. Russell
Dispensable genes and foreign DNA in Streptococcus mutans
Microbiology 2006; 152(6): 1777-1788 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Data]

Sébastien Monchy, Mohammed A. Benotmane, Ruddy Wattiez, Sébastien van Aelst, Vanessa Auquier, Brigitte Borremans, Max Mergeay, Safiyh Taghavi, Daniel van der Lelie, and Tatiana Vallaeys
Transcriptomic and proteomic analyses of the pMOL30-encoded copper resistance in Cupriavidus metallidurans strain CH34
Microbiology 2006; 152(6): 1765-1776 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Dzung B. Diep, Linda Godager, Dag Brede, and Ingolf F. Nes
Data mining and characterization of a novel pediocin-like bacteriocin system from the genome of Pediococcus pentosaceus ATCC 25745
Microbiology 2006; 152(6): 1649-1659 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Malgorzata Adamczyk, Patrycja Dolowy, Michal Jonczyk, Christopher M. Thomas, and Grazyna Jagura-Burdzy
The kfrA gene is the first in a tricistronic operon required for survival of IncP-1 plasmid R751
Microbiology 2006; 152(6): 1621-1637 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Preeti Saini, Naseem Akhtar Gaur, and Rajendra Prasad
Chimeras of the ABC drug transporter Cdr1p reveal functional indispensability of transmembrane domains and nucleotide-binding domains, but transmembrane segment 12 is replaceable with the corresponding homologous region of the non-drug transporter Cdr3p
Microbiology 2006; 152(5): 1559-1573 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figure]

Shannon M. Hinsa and George A. O'Toole
Biofilm formation by Pseudomonas fluorescens WCS365: a role for LapD
Microbiology 2006; 152(5): 1375-1383 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Jessica E. Cooper and Edward J. Feil
The phylogeny of Staphylococcus aureus – which genes make the best intra-species markers?
Microbiology 2006; 152(5): 1297-1305 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Marie-Annick Lety, Claude Frehel, Catherine Raynaud, Marion Dupuis, and Alain Charbit
Exploring the role of the CTL epitope region of listeriolysin O in the pathogenesis of Listeria monocytogenes
Microbiology 2006; 152(5): 1287-1296 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Ka M. Au, Ravi D. Barabote, Kuang Yu Hu, and Milton H. Saier Jr
Evolutionary appearance of H+-translocating pyrophosphatases
Microbiology 2006; 152(5): 1243-1247 [Full Text]  
Article supplement(s): [Supplementary data]

Hyun-Soo Kim, Jin-Ho Lee, Won-Sik Lee, and Won-Gi Bang
Genes encoding ribonucleoside hydrolase 1 and 2 from Corynebacterium ammoniagenes
Microbiology 2006; 152(4): 1169-1177 [Abstract] [Full Text]  
Article supplement(s): [Erratum (Fig. 3)]

Gerard Mazón, Susana Campoy, Ivan Erill, and Jordi Barbé
Identification of the Acidobacterium capsulatum LexA box reveals a lateral acquisition of the Alphaproteobacteria lexA gene
Microbiology 2006; 152(4): 1109-1118 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Qing Chen, Stephen J. Savarino, and Malabi M. Venkatesan
Subtractive hybridization and optical mapping of the enterotoxigenic Escherichia coli H10407 chromosome: isolation of unique sequences and demonstration of significant similarity to the chromosome of E. coli K-12
Microbiology 2006; 152(4): 1041-1054 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Akiyoshi Higo, Hiroshi Katoh, Kazuko Ohmori, Masahiko Ikeuchi, and Masayuki Ohmori
The role of a gene cluster for trehalose metabolism in dehydration tolerance of the filamentous cyanobacterium Anabaena sp. PCC 7120
Microbiology 2006; 152(4): 979-987 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Ina Budde, Leif Steil, Christian Scharf, Uwe Völker, and Erhard Bremer
Adaptation of Bacillus subtilis to growth at low temperature: a combined transcriptomic and proteomic appraisal
Microbiology 2006; 152(3): 831-853 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Annet E. J. van Merode, Henny C. van der Mei, Henk J. Busscher, Karola Waar, and Bastiaan P. Krom
Enterococcus faecalis strains show culture heterogeneity in cell surface charge
Microbiology 2006; 152(3): 807-814 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Noriyuki Nagano, Yukiko Nagano, Ryuichi Nakano, Ryoichi Okamoto, and Matsuhisa Inoue
Genetic diversity of the C protein beta-antigen gene and its upstream regions within clonally related groups of type Ia and Ib group B streptococci
Microbiology 2006; 152(3): 771-778 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figure]

Wim De Windt, Haichun Gao, Wolfgang Krömer, Petra Van Damme, Jan Dick, Jan Mast, Nico Boon, Jizhong Zhou, and Willy Verstraete
AggA is required for aggregation and increased biofilm formation of a hyper-aggregating mutant of Shewanella oneidensis MR-1
Microbiology 2006; 152(3): 721-729 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Jie Qin, Lingyun Song, Hassan Brim, Michael J. Daly, and Anne O. Summers
Hg(II) sequestration and protection by the MerR metal-binding domain (MBD)
Microbiology 2006; 152(3): 709-719 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figure]

Helder Fernandes, Olivier Roumanie, Sandra Claret, Xavier Gatti, Didier Thoraval, François Doignon, and Marc Crouzet
The Rho3 and Rho4 small GTPases interact functionally with Wsc1p, a cell surface sensor of the protein kinase C cell-integrity pathway in Saccharomyces cerevisiae
Microbiology 2006; 152(3): 695-708 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Kaihei Kojima, Yong-Sun Bahn, and Joseph Heitman
Calcineurin, Mpk1 and Hog1 MAPK pathways independently control fludioxonil antifungal sensitivity in Cryptococcus neoformans
Microbiology 2006; 152(3): 591-604 [Abstract] [Full Text]  
Article supplement(s): [Primer sequences]

Rob Lavigne, Jean-Paul Noben, Kirsten Hertveldt, Pieter-Jan Ceyssens, Yves Briers, Debora Dumont, Bart Roucourt, Victor N. Krylov, Vadim V. Mesyanzhinov, Johan Robben, and Guido Volckaert
The structural proteome of Pseudomonas aeruginosa bacteriophage {phi}KMV
Microbiology 2006; 152(2): 529-534 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Tables]

David Moreira, Francisco Rodríguez-Valera, and Purificación López-García
Metagenomic analysis of mesopelagic Antarctic plankton reveals a novel deltaproteobacterial group
Microbiology 2006; 152(2): 505-517 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Arunava Dasgupta, Pratik Datta, Manikuntala Kundu, and Joyoti Basu
The serine/threonine kinase PknB of Mycobacterium tuberculosis phosphorylates PBPA, a penicillin-binding protein required for cell division
Microbiology 2006; 152(2): 493-504 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Elizabeth Burrowes, Christine Baysse, Claire Adams, and Fergal O'Gara
Influence of the regulatory protein RsmA on cellular functions in Pseudomonas aeruginosa PAO1, as revealed by transcriptome analysis
Microbiology 2006; 152(2): 405-418 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Tomas G. Kloosterman, Jetta J. E. Bijlsma, Jan Kok, and Oscar P. Kuipers
To have neighbour's fare: extending the molecular toolbox for Streptococcus pneumoniae
Microbiology 2006; 152(2): 351-359 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Jos Boekhorst, Quinta Helmer, Michiel Kleerebezem, and Roland J. Siezen
Comparative analysis of proteins with a mucus-binding domain found exclusively in lactic acid bacteria
Microbiology 2006; 152(1): 273-280 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables and figures]

Mariët J. van der Werf, Bart Pieterse, Nicole van Luijk, Frank Schuren, Bianca van der Werff-van der Vat, Karin Overkamp, and Renger H. Jellema
Multivariate analysis of microarray data by principal component discriminant analysis: prioritizing relevant transcripts linked to the degradation of different carbohydrates in Pseudomonas putida S12
Microbiology 2006; 152(1): 257-272 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

William G. Miller, Mark D. Englen, Sophia Kathariou, Irene V. Wesley, Guilin Wang, Lauren Pittenger-Alley, Robin M. Siletz, Wayne Muraoka, Paula J. Fedorka-Cray, and Robert E. Mandrell
Identification of host-associated alleles by multilocus sequence typing of Campylobacter coli strains from food animals
Microbiology 2006; 152(1): 245-255 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Data]

Jude Beaudoin, Julie Laliberté, and Simon Labbé
Functional dissection of Ctr4 and Ctr5 amino-terminal regions reveals motifs with redundant roles in copper transport
Microbiology 2006; 152(1): 209-222 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Peixuan Zhu, Robert A. Boykins, and Chao-Ming Tsai
Genetic and functional analyses of the lgtH gene, a member of the {beta}-1,4-galactosyltransferase gene family in the genus Neisseria
Microbiology 2006; 152(1): 123-134 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

João C. Setubal, Marcelo Reis, James Matsunaga, and David A. Haake
Lipoprotein computational prediction in spirochaetal genomes
Microbiology 2006; 152(1): 113-121 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures and tables]

Volodymyr Dvornyk
Subfamilies of cpmA, a gene involved in circadian output, have different evolutionary histories in cyanobacteria
Microbiology 2006; 152(1): 75-84 [Abstract] [Full Text]  
Article supplement(s): [Corrigendum]

Mónica Barriuso-Iglesias, Carlos Barreiro, Fabio Flechoso, and Juan F. Martín
Transcriptional analysis of the F0F1 ATPase operon of Corynebacterium glutamicum ATCC 13032 reveals strong induction by alkaline pH
Microbiology 2006; 152(1): 11-21 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figure]

Gouri Mukerjee-Dhar, Minoru Shimura, Daisuke Miyazawa, Kazuhide Kimbara, and Takashi Hatta
bph genes of the thermophilic PCB degrader, Bacillus sp. JF8: characterization of the divergent ring-hydroxylating dioxygenase and hydrolase genes upstream of the Mn-dependent BphC
Microbiology 2005; 151(12): 4139-4151 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Data]

Mark Dopson, Craig Baker-Austin, and Philip L. Bond
Analysis of differential protein expression during growth states of Ferroplasma strains and insights into electron transport for iron oxidation
Microbiology 2005; 151(12): 4127-4137 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Arpaporn Deeraksa, Somporn Moonmangmee, Hirohide Toyama, Mamoru Yamada, Osao Adachi, and Kazunobu Matsushita
Characterization and spontaneous mutation of a novel gene, polE, involved in pellicle formation in Acetobacter tropicalis SKU1100
Microbiology 2005; 151(12): 4111-4120 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

M. Casiraghi, S. R. Bordenstein, L. Baldo, N. Lo, T. Beninati, J. J. Wernegreen, J. H. Werren, and C. Bandi
Phylogeny of Wolbachia pipientis based on gltA, groEL and ftsZ gene sequences: clustering of arthropod and nematode symbionts in the F supergroup, and evidence for further diversity in the Wolbachia tree
Microbiology 2005; 151(12): 4015-4022 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Clara Belzer, Jeroen Stoof, Catherine S. Beckwith, Ernst J. Kuipers, Johannes G. Kusters, and Arnoud H. M. van Vliet
Differential regulation of urease activity in Helicobacter hepaticus and Helicobacter pylori
Microbiology 2005; 151(12): 3989-3995 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Antonio J. Martín-Galiano, Karin Overweg, Maria J. Ferrándiz, Mark Reuter, Jerry M. Wells, and Adela G. de la Campa
Transcriptional analysis of the acid tolerance response in Streptococcus pneumoniae
Microbiology 2005; 151(12): 3935-3946 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Data]

Eric Guédon, Brice Sperandio, Nicolas Pons, Stanislav Dusko Ehrlich, and Pierre Renault
Overall control of nitrogen metabolism in Lactococcus lactis by CodY, and possible models for CodY regulation in Firmicutes
Microbiology 2005; 151(12): 3895-3909 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Charles D. Sohaskey
Regulation of nitrate reductase activity in Mycobacterium tuberculosis by oxygen and nitric oxide
Microbiology 2005; 151(11): 3803-3810 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Hiroshi Habe, Jin-Sung Chung, Ayako Ishida, Kano Kasuga, Kazuki Ide, Tetsuo Takemura, Hideaki Nojiri, Hisakazu Yamane, and Toshio Omori
The fluorene catabolic linear plasmid in Terrabacter sp. strain DBF63 carries the {beta}-ketoadipate pathway genes, pcaRHGBDCFIJ, also found in proteobacteria
Microbiology 2005; 151(11): 3713-3722 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Data]

Satoshi H. Namekawa, Kazuki Iwabata, Hiroko Sugawara, Fumika N. Hamada, Akiyo Koshiyama, Hiroyuki Chiku, Takashi Kamada, and Kengo Sakaguchi
Knockdown of LIM15/DMC1 in the mushroom Coprinus cinereus by double-stranded RNA-mediated gene silencing
Microbiology 2005; 151(11): 3669-3678 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

B. Koch, T. Liljefors, T. Persson, J. Nielsen, S. Kjelleberg, and M. Givskov
The LuxR receptor: the sites of interaction with quorum-sensing signals and inhibitors
Microbiology 2005; 151(11): 3589-3602 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Table]

Guillermina Alonso, Kelly Baptista, Trinh Ngo, and Diane E. Taylor
Transcriptional organization of the temperature-sensitive transfer system from the IncHI1 plasmid R27
Microbiology 2005; 151(11): 3563-3573 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Raul Fernandez-Lopez, Cristina Machón, Christopher M. Longshaw, Steve Martin, Soren Molin, Ellen L. Zechner, Manuel Espinosa, Erich Lanka, and Fernando de la Cruz
Unsaturated fatty acids are inhibitors of bacterial conjugation
Microbiology 2005; 151(11): 3517-3526 [Abstract] [Full Text]  
Article supplement(s): [HTML Page - index.htslp]

Quanfeng Liang, Masahiro Takeo, Ming Chen, Wei Zhang, Yuquan Xu, and Min Lin
Chromosome-encoded gene cluster for the metabolic pathway that converts aniline to TCA-cycle intermediates in Delftia tsuruhatensis AD9
Microbiology 2005; 151(10): 3435-3446 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Dong W. Choi, William E. Antholine, Young S. Do, Jeremy D. Semrau, Clint J. Kisting, Ryan C. Kunz, Damon Campbell, Vinay Rao, Scott C. Hartsel, and Alan A. DiSpirito
Effect of methanobactin on the activity and electron paramagnetic resonance spectra of the membrane-associated methane monooxygenase in Methylococcus capsulatus Bath
Microbiology 2005; 151(10): 3417-3426 [Abstract] [Full Text]  
Article supplement(s): [Supplementary material]

Jonas T. Larsson, Annika Rogstam, and Claes von Wachenfeldt
Coordinated patterns of cytochrome bd and lactate dehydrogenase expression in Bacillus subtilis
Microbiology 2005; 151(10): 3323-3335 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Chengshu Wang, Tariq M. Butt, and Raymond J. St Leger
Colony sectorization of Metarhizium anisopliae is a sign of ageing
Microbiology 2005; 151(10): 3223-3236 [Abstract] [Full Text]  
Article supplement(s): [HTML Page - index.htslp]

Linyong Mao, Chris Mackenzie, Jung H. Roh, Jesus M. Eraso, Samuel Kaplan, and Haluk Resat
Combining microarray and genomic data to predict DNA binding motifs
Microbiology 2005; 151(10): 3197-3213 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Joe J. Harrison, Howard Ceri, Nicole J. Roper, Erin A. Badry, Kimberley M. Sproule, and Raymond J. Turner
Persister cells mediate tolerance to metal oxyanions in Escherichia coli
Microbiology 2005; 151(10): 3181-3195 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Sathish Prasad, Peter C. Morris, Rasmus Hansen, Philip G. Meaden, and Brian Austin
A novel bacteriocin-like substance (BLIS) from a pathogenic strain of Vibrio harveyi
Microbiology 2005; 151(9): 3051-3058 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Table]

Katrin Pollmann, Johannes Raff, Michaela Schnorpfeil, Galina Radeva, and Sonja Selenska-Pobell
Novel surface layer protein genes in Bacillus sphaericus associated with unusual insertion elements
Microbiology 2005; 151(9): 2961-2973 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Richard A. Stabler, Gemma L. Marsden, Adam A. Witney, Yanwen Li, Stephen D. Bentley, Christoph M. Tang, and Jason Hinds
Identification of pathogen-specific genes through microarray analysis of pathogenic and commensal Neisseria species
Microbiology 2005; 151(9): 2907-2922 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

M. A. Patrauchan, S. Sarkisova, K. Sauer, and M. J. Franklin
Calcium influences cellular and extracellular product formation during biofilm-associated growth of a marine Pseudoalteromonas sp.
Microbiology 2005; 151(9): 2885-2897 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Figure]

E. Tjeerd van Rij, Geneviève Girard, Ben J. J. Lugtenberg, and Guido V. Bloemberg
Influence of fusaric acid on phenazine-1-carboxamide synthesis and gene expression of Pseudomonas chlororaphis strain PCL1391
Microbiology 2005; 151(8): 2805-2814 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Rotsaman Chongcharoen, Thomas J. Smith, Kenneth P. Flint, and Howard Dalton
Adaptation and acclimatization to formaldehyde in methylotrophs capable of high-concentration formaldehyde detoxification
Microbiology 2005; 151(8): 2615-2622 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Alexander Bolotin, Benoit Quinquis, Alexei Sorokin, and S. Dusko Ehrlich
Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin
Microbiology 2005; 151(8): 2551-2561 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Tables]

Sudhir Sinha, K. Kosalai, Shalini Arora, Abdelkader Namane, Pawan Sharma, Anil N. Gaikwad, Priscille Brodin, and Stewart T. Cole
Immunogenic membrane-associated proteins of Mycobacterium tuberculosis revealed by proteomics
Microbiology 2005; 151(7): 2411-2419 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Table]

Mingang Zhu, Marianne Valdebenito, Günther Winkelmann, and Klaus Hantke
Functions of the siderophore esterases IroD and IroE in iron-salmochelin utilization
Microbiology 2005; 151(7): 2363-2372 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Figures]

Helga David, Astrid Mørkeberg Krogh, Christophe Roca, Mats Åkesson, and Jens Nielsen
CreA influences the metabolic fluxes of Aspergillus nidulans during growth on glucose and xylose
Microbiology 2005; 151(7): 2209-2221 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Haiming Li, Pierre-Étienne Jacques, Mariana Gabriela Ghinet, Ryszard Brzezinski, and Rolf Morosoli
Determining the functionality of putative Tat-dependent signal peptides in Streptomyces coelicolor A3(2) by using two different reporter proteins
Microbiology 2005; 151(7): 2189-2198 [Abstract] [Full Text]  
Article supplement(s): [Supplementary sequence data] [Supplementary sequence data] [Supplementary data]

Gang Wu, David E. Culley, and Weiwen Zhang
Predicted highly expressed genes in the genomes of Streptomyces coelicolor and Streptomyces avermitilis and the implications for their metabolism
Microbiology 2005; 151(7): 2175-2187 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables] [HTML Page - index.htslp]

Sabri M. Naser, Fabiano L. Thompson, Bart Hoste, Dirk Gevers, Peter Dawyndt, Marc Vancanneyt, and Jean Swings
Application of multilocus sequence analysis (MLSA) for rapid identification of Enterococcus species based on rpoA and pheS genes
Microbiology 2005; 151(7): 2141-2150 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data] [Supplementary data]

R. Quatrini, C. Lefimil, D. S. Holmes, and E. Jedlicki
The ferric iron uptake regulator (Fur) from the extreme acidophile Acidithiobacillus ferrooxidans
Microbiology 2005; 151(6): 2005-2015 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Naola M. Ferguson, Diego Hepp, Shulei Sun, Nilo Ikuta, Sharon Levisohn, Stanley H. Kleven, and Maricarmen García
Use of molecular diversity of Mycoplasma gallisepticum by gene-targeted sequencing (GTS) and random amplified polymorphic DNA (RAPD) analysis for epidemiological studies
Microbiology 2005; 151(6): 1883-1893 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Figure]

A. Blanco-Rivero, F. Leganés, E. Fernández-Valiente, P. Calle, and F. Fernández-Piñas
mrpA, a gene with roles in resistance to Na+ and adaptation to alkaline pH in the cyanobacterium Anabaena sp. PCC7120
Microbiology 2005; 151(5): 1671-1682 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Mickel L. A. Jansen, Jasper A. Diderich, Mlawule Mashego, Adham Hassane, Johannes H. de Winde, Pascale Daran-Lapujade, and Jack T. Pronk
Prolonged selection in aerobic, glucose-limited chemostat cultures of Saccharomyces cerevisiae causes a partial loss of glycolytic capacity
Microbiology 2005; 151(5): 1657-1669 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Bruce L. Granger, Michelle L. Flenniken, Dana A. Davis, Aaron P. Mitchell, and Jim E. Cutler
Yeast wall protein 1 of Candida albicans
Microbiology 2005; 151(5): 1631-1644 [Abstract] [Full Text]  
Article supplement(s): [Supplementary material]

B. Purevdorj-Gage, W. J. Costerton, and P. Stoodley
Phenotypic differentiation and seeding dispersal in non-mucoid and mucoid Pseudomonas aeruginosa biofilms
Microbiology 2005; 151(5): 1569-1576 [Abstract] [Full Text]  
Article supplement(s): [Supplementary movies]

Danny S. Tuckwell, Matthew J. Nicholson, Christopher S. McSweeney, Michael K. Theodorou, and Jayne L. Brookman
The rapid assignment of ruminal fungi to presumptive genera using ITS1 and ITS2 RNA secondary structures to produce group-specific fingerprints
Microbiology 2005; 151(5): 1557-1567 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Karina Sampson and I. Brent Heath
The dynamic behaviour of microtubules and their contributions to hyphal tip growth in Aspergillus nidulans
Microbiology 2005; 151(5): 1543-1555 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Figures]

M. Gabriela Bowden, Wei Chen, Jenny Singvall, Yi Xu, Sharon J. Peacock, Viviana Valtulina, Pietro Speziale, and Magnus Höök
Identification and preliminary characterization of cell-wall-anchored proteins of Staphylococcus epidermidis
Microbiology 2005; 151(5): 1453-1464 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Patrice Bruscella, Laure Cassagnaud, Jeanine Ratouchniak, Gaël Brasseur, Elisabeth Lojou, Ricardo Amils, and Violaine Bonnefoy
The HiPIP from the acidophilic Acidithiobacillus ferrooxidans is correctly processed and translocated in Escherichia coli, in spite of the periplasm pH difference between these two micro-organisms
Microbiology 2005; 151(5): 1421-1431 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Figures and Table]

Shahid Noor and Narayan S. Punekar
Allosteric NADP-glutamate dehydrogenase from aspergilli: purification, characterization and implications for metabolic regulation at the carbon–nitrogen interface
Microbiology 2005; 151(5): 1409-1419 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Figures]

Eva Radmacher, Kathrin C. Stansen, Gurdyal S. Besra, Luke J. Alderwick, William N. Maughan, Günter Hollweg, Hermann Sahm, Volker F. Wendisch, and Lothar Eggeling
Ethambutol, a cell wall inhibitor of Mycobacterium tuberculosis, elicits L-glutamate efflux of Corynebacterium glutamicum
Microbiology 2005; 151(5): 1359-1368 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Laurence Salaün, Sarah Ayraud, and Nigel J. Saunders
Phase variation mediated niche adaptation during prolonged experimental murine infection with Helicobacter pylori
Microbiology 2005; 151(3): 917-923 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Markus Pötter, Helena Müller, and Alexander Steinbüchel
Influence of homologous phasins (PhaP) on PHA accumulation and regulation of their expression by the transcriptional repressor PhaR in Ralstonia eutropha H16
Microbiology 2005; 151(3): 825-833 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Dag Ahrén, Margareta Tholander, Csaba Fekete, Balaji Rajashekar, Eva Friman, Tomas Johansson, and Anders Tunlid
Comparison of gene expression in trap cells and vegetative hyphae of the nematophagous fungus Monacrosporium haptotylum
Microbiology 2005; 151(3): 789-803 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Sonja-Verena Albers and Arnold J. M. Driessen
Analysis of ATPases of putative secretion operons in the thermoacidophilic archaeon Sulfolobus solfataricus
Microbiology 2005; 151(3): 763-773 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Timothy P. Stinear, Melinda J. Pryor, Jessica L. Porter, and Stewart T. Cole
Functional analysis and annotation of the virulence plasmid pMUM001 from Mycobacterium ulcerans
Microbiology 2005; 151(3): 683-692 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Florian D. Ernst, Stefan Bereswill, Barbara Waidner, Jeroen Stoof, Ulrike Mäder, Johannes G. Kusters, Ernst J. Kuipers, Manfred Kist, Arnoud H. M. van Vliet, and Georg Homuth
Transcriptional profiling of Helicobacter pylori Fur- and iron-regulated gene expression
Microbiology 2005; 151(2): 533-546 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Takeshi Tokai, Makoto Fujimura, Hirokazu Inoue, Takayuki Aoki, Kunihiro Ohta, Takehiko Shibata, Isamu Yamaguchi, and Makoto Kimura
Concordant evolution of trichothecene 3-O-acetyltransferase and an rDNA species phylogeny of trichothecene-producing and non-producing fusaria and other ascomycetous fungi
Microbiology 2005; 151(2): 509-519 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Leif Steil, Mónica Serrano, Adriano O. Henriques, and Uwe Völker
Genome-wide analysis of temporally regulated and compartment-specific gene expression in sporulating cells of Bacillus subtilis
Microbiology 2005; 151(2): 399-420 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Jana Hejnova, Ulrich Dobrindt, Radka Nemcova, Christophe Rusniok, Alojz Bomba, Lionel Frangeul, Jörg Hacker, Philippe Glaser, Peter Sebo, and Carmen Buchrieser
Characterization of the flexible genome complement of the commensal Escherichia coli strain A0 34/86 (O83 : K24 : H31)
Microbiology 2005; 151(2): 385-398 [Abstract] [Full Text]  
Article supplement(s): [HTML Page - index.htslp]

Florian M. Freimoser, Gang Hu, and Raymond J. St Leger
Variation in gene expression patterns as the insect pathogen Metarhizium anisopliae adapts to different host cuticles or nutrient deprivation in vitro
Microbiology 2005; 151(2): 361-371 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

William G. Miller, Bruce M. Pearson, Jerry M. Wells, Craig T. Parker, Vladimir V. Kapitonov, and Robert E. Mandrell
Diversity within the Campylobacter jejuni type I restriction–modification loci
Microbiology 2005; 151(2): 337-351 [Abstract] [Full Text]  
Article supplement(s): [Sequence accession numbers]

Kathryn Holmes, Francis Mulholland, Bruce M. Pearson, Carmen Pin, Johanna McNicholl-Kennedy, Julian M. Ketley, and Jerry M. Wells
Campylobacter jejuni gene expression in response to iron limitation and the role of Fur
Microbiology 2005; 151(1): 243-257 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Anna M. Raczko, Janusz M. Bujnicki, Marcin Pawlowski, Renata Godlewska, Magdalena Lewandowska, and Elzbieta K. Jagusztyn-Krynicka
Characterization of new DsbB-like thiol-oxidoreductases of Campylobacter jejuni and Helicobacter pylori and classification of the DsbB family based on phylogenomic, structural and functional criteria
Microbiology 2005; 151(1): 219-231 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Data]

Maja Rupnik, Stefan Pabst, Marjan Rupnik, Christoph von Eichel-Streiber, Henning Urlaub, and Hans-Dieter Söling
Characterization of the cleavage site and function of resulting cleavage fragments after limited proteolysis of Clostridium difficile toxin B (TcdB) by host cells
Microbiology 2005; 151(1): 199-208 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Monika Ehling-Schulz, Birgitta Svensson, Marie-Helene Guinebretiere, Toril Lindbäck, Maria Andersson, Anja Schulz, Martina Fricker, Anders Christiansson, Per Einar Granum, Erwin Märtlbauer, Christophe Nguyen-The, Mirja Salkinoja-Salonen, and Siegfried Scherer
Emetic toxin formation of Bacillus cereus is restricted to a single evolutionary lineage of closely related strains
Microbiology 2005; 151(1): 183-197 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Data] [Erratum]

Matthew J. Nicholson, Michael K. Theodorou, and Jayne L. Brookman
Molecular analysis of the anaerobic rumen fungus Orpinomyces – insights into an AT-rich genome
Microbiology 2005; 151(1): 121-133 [Abstract] [Full Text]  
Article supplement(s): [Sequence accession numbers]

Michael Benoit and David Klaus
Can genetically modified Escherichia coli with neutral buoyancy induced by gas vesicles be used as an alternative method to clinorotation for microgravity studies?
Microbiology 2005; 151(1): 69-74 [Abstract] [Full Text]  
Article supplement(s): [Supplementary calculations]

Qian Gao, Katharine E. Kripke, Alok J. Saldanha, Weihong Yan, Susan Holmes, and Peter M. Small
Gene expression diversity among Mycobacterium tuberculosis clinical isolates
Microbiology 2005; 151(1): 5-14 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Angus L. Dawe, Gert C. Segers, Todd D. Allen, Vanessa C. McMains, and Donald L. Nuss
Microarray analysis of Cryphonectria parasitica G{alpha}- and G{beta}{gamma}-signalling pathways reveals extensive modulation by hypovirus infection
Microbiology 2004; 150(12): 4033-4043 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

David Ezra, W. M. Hess, and Gary A. Strobel
New endophytic isolates of Muscodor albus, a volatile-antibiotic-producing fungus
Microbiology 2004; 150(12): 4023-4031 [Abstract] [Full Text]  
Article supplement(s): [Supplementary sequence alignment]

Ina Catrein, Roger Dumke, January Weiner III, Enno Jacobs, and Richard Herrmann
Cross-complementation between the products of the genes P1 and ORF6 of Mycoplasma pneumoniae subtypes 1 and 2
Microbiology 2004; 150(12): 3989-4000 [Abstract] [Full Text]  
Article supplement(s): [Supplementary files]

Michelle R. Rondon, Katie S. Ballering, and Michael G. Thomas
Identification and analysis of a siderophore biosynthetic gene cluster from Agrobacterium tumefaciens C58
Microbiology 2004; 150(11): 3857-3866 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Nicholas A. Saunders, Anthony Underwood, Angela M. Kearns, and Gillian Hallas
A virulence-associated gene microarray: a tool for investigation of the evolution and pathogenic potential of Staphylococcus aureus
Microbiology 2004; 150(11): 3763-3771 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Table]

Jos Boekhorst, Roland J. Siezen, Marie-Camille Zwahlen, David Vilanova, Raymond D. Pridmore, Annick Mercenier, Michiel Kleerebezem, Willem M. de Vos, Harald Brüssow, and Frank Desiere
The complete genomes of Lactobacillus plantarum and Lactobacillus johnsonii reveal extensive differences in chromosome organization and gene content
Microbiology 2004; 150(11): 3601-3611 [Abstract] [Full Text]  
Article supplement(s): [Supplementary tables]

Dmitry A. Rodionov, Mikhail S. Gelfand, and Nicole Hugouvieux-Cotte-Pattat
Comparative genomics of the KdgR regulon in Erwinia chrysanthemi 3937 and other gamma-proteobacteria
Microbiology 2004; 150(11): 3571-3590 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Table]

Dongmei Li, Valeria Gurkovska, Michael Sheridan, Richard Calderone, and Neeraj Chauhan
Studies on the regulation of the two-component histidine kinase gene CHK1 in Candida albicans using the heterologous lacZ reporter gene
Microbiology 2004; 150(10): 3305-3313 [Abstract] [Full Text]  
Article supplement(s): [Corrigendum]

Francisco Gómez-Esquer, Jose M. Rodríguez-Peña, Gema Díaz, Estefanía Rodriguez, Peter Briza, César Nombela, and Javier Arroyo
CRR1, a gene encoding a putative transglycosidase, is required for proper spore wall assembly in Saccharomyces cerevisiae
Microbiology 2004; 150(10): 3269-3280 [Abstract] [Full Text]  
Article supplement(s): [Supplementary video file]

Christina König, Dirk Eulberg, Janosch Gröning, Silvia Lakner, Volker Seibert, Stefan R. Kaschabek, and Michael Schlömann
A linear megaplasmid, p1CP, carrying the genes for chlorocatechol catabolism of Rhodococcus opacus 1CP
Microbiology 2004; 150(9): 3075-3087 [Abstract] [Full Text]  
Article supplement(s): [Supplementary sequence data]

Michael E. Watson Jr, Jane L. Burns, and Arnold L. Smith
Hypermutable Haemophilus influenzae with mutations in mutS are found in cystic fibrosis sputum
Microbiology 2004; 150(9): 2947-2958 [Abstract] [Full Text]  
Article supplement(s): [Supplementary sequence data]

Tracy L. Anderton, Duncan J. Maskell, and Andrew Preston
Ciliostasis is a key early event during colonization of canine tracheal tissue by Bordetella bronchiseptica
Microbiology 2004; 150(9): 2843-2855 [Abstract] [Full Text]  
Article supplement(s): [Supplementary movie]

A. S. Johnson, S. van Horck, and P. J. Lewis
Dynamic localization of membrane proteins in Bacillus subtilis
Microbiology 2004; 150(9): 2815-2824 [Abstract] [Full Text]  
Article supplement(s): [Supplementary movies]

Matthew I. Hutchings, Paul A. Hoskisson, Govind Chandra, and Mark J. Buttner
Sensing and responding to diverse extracellular signals? Analysis of the sensor kinases and response regulators of Streptomyces coelicolor A3(2)
Microbiology 2004; 150(9): 2795-2806 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Jan-Ulrich Kreft
Biofilms promote altruism
Microbiology 2004; 150(8): 2751-2760 [Abstract] [Full Text]  
Article supplement(s): [Supplementary movies]

Xia Zhou, Stephen J. Bent, Maria G. Schneider, Catherine C. Davis, Mohammed R. Islam, and Larry J. Forney
Characterization of vaginal microbial communities in adult healthy women using cultivation-independent methods
Microbiology 2004; 150(8): 2565-2573 [Abstract] [Full Text]  
Article supplement(s): [Corrigendum]

Se H. Kim, Abraham B. Chang, and Milton H. Saier Jr
Sequence similarity between multidrug resistance efflux pumps of the ABC and RND superfamilies
Microbiology 2004; 150(8): 2493-2495 [Full Text]  
Article supplement(s): [Supplementary material]

Dimitry Yu. Sorokin, Tat'yana P. Tourova, Alexey N. Antipov, G. Muyzer, and J. Gijs Kuenen
Anaerobic growth of the haloalkaliphilic denitrifying sulfur-oxidizing bacterium Thialkalivibrio thiocyanodenitrificans sp. nov. with thiocyanate
Microbiology 2004; 150(7): 2435-2442 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Lionel Ferrières, Anne Francez-Charlot, Jérôme Gouzy, Stéphane Rouillé, and Daniel Kahn
FixJ-regulated genes evolved through promoter duplication in Sinorhizobium meliloti
Microbiology 2004; 150(7): 2335-2345 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Antonio J. Martín-Galiano, Jerry M. Wells, and Adela G. de la Campa
Relationship between codon biased genes, microarray expression values and physiological characteristics of Streptococcus pneumoniae
Microbiology 2004; 150(7): 2313-2325 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Markus Pötter, Helena Müller, Frank Reinecke, Roman Wieczorek, Florian Fricke, Botho Bowien, Bärbel Friedrich, and Alexander Steinbüchel
The complex structure of polyhydroxybutyrate (PHB) granules: four orthologous and paralogous phasins occur in Ralstonia eutropha
Microbiology 2004; 150(7): 2301-2311 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data] [Corrigendum]

Vinayak Kapatral, John W. Campbell, Scott A. Minnich, Nicholas R. Thomson, Philip Matsumura, and Birgit M. Prüß
Gene array analysis of Yersinia enterocolitica FlhD and FlhC: regulation of enzymes affecting synthesis and degradation of carbamoylphosphate
Microbiology 2004; 150(7): 2289-2300 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Michael Beer, Yun H. Kong, and Robert J. Seviour
Are some putative glycogen accumulating organisms (GAO) in anaerobic : aerobic activated sludge systems members of the {alpha}-Proteobacteria?
Microbiology 2004; 150(7): 2267-2275 [Abstract] [Full Text]  
Article supplement(s): [Erratum]

Arlene Kelly, Martin D. Goldberg, Ronan K. Carroll, Vittoria Danino, Jay C. D. Hinton, and Charles J. Dorman
A global role for Fis in the transcriptional control of metabolism and type III secretion in Salmonella enterica serovar Typhimurium
Microbiology 2004; 150(7): 2037-2053 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Lia W. Liefting, Mary E. Shaw, and Bruce C. Kirkpatrick
Sequence analysis of two plasmids from the phytoplasma beet leafhopper-transmitted virescence agent
Microbiology 2004; 150(6): 1809-1817 [Abstract] [Full Text]  
Article supplement(s): [Supplementary sequence alignments]

Jonas Bunikis, Ulf Garpmo, Jean Tsao, Johan Berglund, Durland Fish, and Alan G. Barbour
Sequence typing reveals extensive strain diversity of the Lyme borreliosis agents Borrelia burgdorferi in North America and Borrelia afzelii in Europe
Microbiology 2004; 150(6): 1741-1755 [Abstract] [Full Text]  
Article supplement(s): [Details]

Sameer M. Dixit, David M. Gordon, Xi-Yang Wu, Toni Chapman, Kaila Kailasapathy, and James J.-C. Chin
Diversity analysis of commensal porcine Escherichia coli – associations between genotypes and habitat in the porcine gastrointestinal tract
Microbiology 2004; 150(6): 1735-1740 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Rachel Pinto, Quing Xui Tang, Warwick J. Britton, Thomas S. Leyh, and James A. Triccas
The Mycobacterium tuberculosis cysD and cysNC genes form a stress-induced operon that encodes a tri-functional sulfate-activating complex
Microbiology 2004; 150(6): 1681-1686 [Abstract] [Full Text]  
Article supplement(s): [Corrigendum (author name)]

Eduardo P. C. Rocha
The replication-related organization of bacterial genomes
Microbiology 2004; 150(6): 1609-1627 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Md Anwarul Haque and Nicholas J. Russell
Strains of Bacillus cereus vary in the phenotypic adaptation of their membrane lipid composition in response to low water activity, reduced temperature and growth in rice starch
Microbiology 2004; 150(5): 1397-1404 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Julianne V. Kus, Elizabeth Tullis, Dennis G. Cvitkovitch, and Lori L. Burrows
Significant differences in type IV pilin allele distribution among Pseudomonas aeruginosa isolates from cystic fibrosis (CF) versus non-CF patients
Microbiology 2004; 150(5): 1315-1326 [Abstract] [Full Text]  
Article supplement(s): [Strain information]

Gennady Kholodii, Sofia Mindlin, Zhosefine Gorlenko, Mayya Petrova, Jon Hobman, and Vadim Nikiforov
Translocation of transposition-deficient (TndPKLH2-like) transposons in the natural environment: mechanistic insights from the study of adjacent DNA sequences
Microbiology 2004; 150(4): 979-992 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

J. Estelle Foster, Qin Sheng, Jonathan R. McClain, Mark Bures, Thalia I. Nicas, Kenneth Henry, Malcolm E. Winkler, and Raymond Gilmour
Kinetic and mechanistic analyses of new classes of inhibitors of two-component signal transduction systems using a coupled assay containing HpkA–DrrA from Thermotoga maritima
Microbiology 2004; 150(4): 885-896 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Claudia Mailaender, Norbert Reiling, Harald Engelhardt, Stefan Bossmann, Stefan Ehlers, and Michael Niederweis
The MspA porin promotes growth and increases antibiotic susceptibility of both Mycobacterium bovis BCG and Mycobacterium tuberculosis
Microbiology 2004; 150(4): 853-864 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figure]

Laurence Salaün, Bodo Linz, Sebastian Suerbaum, and Nigel J. Saunders
The diversity within an expanded and redefined repertoire of phase-variable genes in Helicobacter pylori
Microbiology 2004; 150(4): 817-830 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Jörg Mostertz, Christian Scharf, Michael Hecker, and Georg Homuth
Transcriptome and proteome analysis of Bacillus subtilis gene expression in response to superoxide and peroxide stress
Microbiology 2004; 150(2): 497-512 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Magali Marmiesse, Priscille Brodin, Carmen Buchrieser, Christina Gutierrez, Nathalie Simoes, Veronique Vincent, Philippe Glaser, Stewart T. Cole, and Roland Brosch
Macro-array and bioinformatic analyses reveal mycobacterial ‘core’ genes, variation in the ESAT-6 gene family and new phylogenetic markers for the Mycobacterium tuberculosis complex
Microbiology 2004; 150(2): 483-496 [Abstract] [Full Text]  
Article supplement(s): [Corrigendum]

M. Thomas P. Gilbert, Jon Cuccui, William White, Niels Lynnerup, Richard W. Titball, Alan Cooper, and Michael B. Prentice
Absence of Yersinia pestis-specific DNA in human teeth from five European excavations of putative plague victims
Microbiology 2004; 150(2): 341-354 [Abstract] [Full Text]  
Article supplement(s): [Additional information]

David M. Gordon and Ann Cowling
The distribution and genetic structure of Escherichia coli in Australian vertebrates: host and geographic effects
Microbiology 2003; 149(12): 3575-3586 [Abstract] [Full Text]  
Article supplement(s): [HTML Page - index.htslp]

Michael Feldgarden, Noah Byrd, and Frederick M. Cohan
Gradual evolution in bacteria: evidence from Bacillus systematics
Microbiology 2003; 149(12): 3565-3573 [Abstract] [Full Text]  
Article supplement(s): [Principal component analysis]

Tom Coenye and Peter Vandamme
Extracting phylogenetic information from whole-genome sequencing projects: the lactic acid bacteria as a test case
Microbiology 2003; 149(12): 3507-3517 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Timothy J. D. Goodwin, Margaret I. Butler, and Russell T. M. Poulter
Cryptons: a group of tyrosine-recombinase-encoding DNA transposons from pathogenic fungi
Microbiology 2003; 149(11): 3099-3109 [Abstract] [Full Text]  
Article supplement(s): [Supplementary sequence alignments]

Christopher R. Peabody, Yong Joon Chung, Ming-Ren Yen, Dominique Vidal-Ingigliardi, Anthony P. Pugsley, and Milton H. Saier Jr
Type II protein secretion and its relationship to bacterial type IV pili and archaeal flagella
Microbiology 2003; 149(11): 3051-3072 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Yoko Eguchi, Taku Oshima, Hirotada Mori, Rikizo Aono, Kaneyoshi Yamamoto, Akira Ishihama, and Ryutaro Utsumi
Transcriptional regulation of drug efflux genes by EvgAS, a two-component system in Escherichia coli
Microbiology 2003; 149(10): 2819-2828 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

S. Utaida, P. M. Dunman, D. Macapagal, E. Murphy, S. J. Projan, V. K. Singh, R. K. Jayaswal, and B. J. Wilkinson
Genome-wide transcriptional profiling of the response of Staphylococcus aureus to cell-wall-active antibiotics reveals a cell-wall-stress stimulon
Microbiology 2003; 149(10): 2719-2732 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Aurélie André, Walter Maccheroni, François Doignon, Monique Garnier, and Joël Renaudin
Glucose and trehalose PTS permeases of Spiroplasma citri probably share a single IIA domain, enabling the spiroplasma to adapt quickly to carbohydrate changes in its environment
Microbiology 2003; 149(9): 2687-2696 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Sequence Alignment]

Subhrajit Biswas, Monideepa Roy, and Asis Datta
N-Acetylglucosamine-inducible CaGAP1 encodes a general amino acid permease which co-ordinates external nitrogen source response and morphogenesis in Candida albicans
Microbiology 2003; 149(9): 2597-2608 [Abstract] [Full Text]  
Article supplement(s): [Supplementary sequence alignment]

Ryuji Shingaki, Yasuhiro Kasahara, Megumi Iwano, Masayoshi Kuwano, Tomomasa Takatsuka, Tetsuyoshi Inoue, Susumu Kokeguchi, and Kazuhiro Fukui
Induction of L-form-like cell shape change of Bacillus subtilis under microculture conditions
Microbiology 2003; 149(9): 2501-2511 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Jennifer Jagnow and Steven Clegg
Klebsiella pneumoniae MrkD-mediated biofilm formation on extracellular matrix- and collagen-coated surfaces
Microbiology 2003; 149(9): 2397-2405 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Movie]

Angus L. Dawe, Vanessa C. McMains, Maria Panglao, Shin Kasahara, Baoshan Chen, and Donald L. Nuss
An ordered collection of expressed sequences from Cryphonectria parasitica and evidence of genomic microsynteny with Neurospora crassa and Magnaporthe grisea
Microbiology 2003; 149(9): 2373-2384 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Thierry Doan, Pascale Servant, Shigeo Tojo, Hirotake Yamaguchi, Guillaume Lerondel, Ken-Ichi Yoshida, Yasutaro Fujita, and Stéphane Aymerich
The Bacillus subtilis ywkA gene encodes a malic enzyme and its transcription is activated by the YufL/YufM two-component system in response to malate
Microbiology 2003; 149(9): 2331-2343 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Leka Papazisi, Timothy S. Gorton, Gerald Kutish, Philip F. Markham, Glenn F. Browning, Di Kim Nguyen, Steven Swartzell, Anup Madan, Greg Mahairas, and Steven J. Geary
The complete genome sequence of the avian pathogen Mycoplasma gallisepticum strain Rlow
Microbiology 2003; 149(9): 2307-2316 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Ana Garcerá, Ana Isabel Martínez, Luis Castillo, M. Victoria Elorza, Rafael Sentandreu, and Eulogio Valentín
Identification and study of a Candida albicans protein homologous to Saccharomyces cerevisiae Ssr1p, an internal cell-wall protein
Microbiology 2003; 149(8): 2137-2145 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Hiroya Yurimoto, Bumjun Lee, Taisuke Yano, Yasuyoshi Sakai, and Nobuo Kato
Physiological role of S-formylglutathione hydrolase in C1 metabolism of the methylotrophic yeast Candida boidinii
Microbiology 2003; 149(8): 1971-1979 [Abstract] [Full Text]  
Article supplement(s): [Corrigendum]

Florian M. Freimoser, Steven Screen, Gang Hu, and Raymond St. Leger
EST analysis of genes expressed by the zygomycete pathogen Conidiobolus coronatus during growth on insect cuticle
Microbiology 2003; 149(7): 1893-1900 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Joanne E. Dove, Kazutoyo Yasukawa, Colin R. Tinsley, and Xavier Nassif
Production of the signalling molecule, autoinducer-2, by Neisseria meningitidis: lack of evidence for a concerted transcriptional response
Microbiology 2003; 149(7): 1859-1869 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Koji Ichinose, Makoto Ozawa, Keiko Itou, Kanako Kunieda, and Yutaka Ebizuka
Cloning, sequencing and heterologous expression of the medermycin biosynthetic gene cluster of Streptomyces sp. AM-7161: towards comparative analysis of the benzoisochromanequinone gene clusters
Microbiology 2003; 149(7): 1633-1645 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Katerina Petrícková and Miroslav Petrícek
Eukaryotic-type protein kinases in Streptomyces coelicolor: variations on a common theme
Microbiology 2003; 149(7): 1609-1621 [Abstract] [Full Text]  
Article supplement(s): [Sequence alignment] [Sequence alignment]

Eloísa Andújar and Eduardo Santero
Site-directed mutagenesis of an extradiol dioxygenase involved in tetralin biodegradation identifies residues important for activity or substrate specificity
Microbiology 2003; 149(6): 1559-1567 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Stephen M. Hunt, Martin A. Hamilton, John T. Sears, Gary Harkin, and Jason Reno
A computer investigation of chemically mediated detachment in bacterial biofilms
Microbiology 2003; 149(5): 1155-1163 [Abstract] [Full Text]  
Article supplement(s): [Supplementary movie]

Atsushi Maruyama, Yoshito Kumagai, Kazuya Morikawa, Keiko Taguchi, Hideo Hayashi, and Toshiko Ohta
Oxidative-stress-inducible qorA encodes an NADPH-dependent quinone oxidoreductase catalysing a one-electron reduction in Staphylococcus aureus
Microbiology 2003; 149(2): 389-398 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Florian M. Freimoser, Steven Screen, Savita Bagga, Gang Hu, and Raymond J. St Leger
Expressed sequence tag (EST) analysis of two subspecies of Metarhizium anisopliae reveals a plethora of secreted proteins with potential activity in insect hosts
Microbiology 2003; 149(1): 239-247 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Tables]

Erich Bornberg-Bauer and January Weiner III
A putative transcription factor inducing mobility in Mycoplasma pneumoniae
Microbiology 2002; 148(12): 3764-3765 [Full Text]  
Article supplement(s): [Supplementary data]

G. Kholodii, Zh. Gorlenko, S. Mindlin, J. Hobman, and V. Nikiforov
Tn5041-like transposons: molecular diversity, evolutionary relationships and distribution of distinct variants in environmental bacteria
Microbiology 2002; 148(11): 3569-3582 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Takuya Morimoto, Pek Chin Loh, Tomohiro Hirai, Kei Asai, Kazuo Kobayashi, Shigeki Moriya, and Naotake Ogasawara
Six GTP-binding proteins of the Era/Obg family are essential for cell growth in Bacillus subtilis
Microbiology 2002; 148(11): 3539-3552 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Graham R. Stewart, Lorenz Wernisch, Richard Stabler, Joseph A. Mangan, Jason Hinds, Ken G. Laing, Douglas B. Young, and Philip D. Butcher
Dissection of the heat-shock response in Mycobacterium tuberculosis using mutants and microarrays
Microbiology 2002; 148(10): 3129-3138 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

James D. Douglas, Suzanne J. Senior, Caroline Morehouse, Benjawan Phetsukiri, Ian B. Campbell, Gurdyal S. Besra, and David E. Minnikin
Analogues of thiolactomycin: potential drugs with enhanced anti-mycobacterial activity
Microbiology 2002; 148(10): 3101-3109 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Ruth A. McAdam, Selwyn Quan, Debbie A. Smith, Stoyan Bardarov, Joanna C. Betts, Fiona C. Cook, Elizabeth U. Hooker, Alan P. Lewis, Peter Woollard, Martin J. Everett, Pauline T. Lukey, Gregory J. Bancroft, William R. Jacobs Jr, and Ken Duncan
Characterization of a Mycobacterium tuberculosis H37Rv transposon library reveals insertions in 351 ORFs and mutants with altered virulence
Microbiology 2002; 148(10): 2975-2986 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Stuart J. Cordwell, Martin R. Larsen, Rebecca T. Cole, and Bradley J. Walsh
Comparative proteomics of Staphylococcus aureus and the response of methicillin-resistant and methicillin-sensitive strains to Triton X-100
Microbiology 2002; 148(9): 2765-2781 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Mana Obata-Yasuoka, William Ba-Thein, Teizo Tsukamoto, Hiroyuki Yoshikawa, and Hideo Hayashi
Vaginal Escherichia coli share common virulence factor profiles, serotypes and phylogeny with other extraintestinal E. coli
Microbiology 2002; 148(9): 2745-2752 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Emma Griffiths and Radhey S. Gupta
Protein signatures distinctive of chlamydial species: horizontal transfers of cell wall biosynthesis genes glmU from archaea to chlamydiae and murA between chlamydiae and Streptomyces
Microbiology 2002; 148(8): 2541-2549 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Markus Pötter, Mohamed H. Madkour, Frank Mayer, and Alexander Steinbüchel
Regulation of phasin expression and polyhydroxyalkanoate (PHA) granule formation in Ralstonia eutropha H16
Microbiology 2002; 148(8): 2413-2426 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Iain C. Sutcliffe and Dean J. Harrington
Pattern searches for the identification of putative lipoprotein genes in Gram-positive bacterial genomes
Microbiology 2002; 148(7): 2065-2077 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Inge H. M. van Loo and Frits R. Mooi
Changes in the Dutch Bordetella pertussis population in the first 20 years after the introduction of whole-cell vaccines
Microbiology 2002; 148(7): 2011-2018 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Peixuan Zhu, Michael J. Klutch, Margaret C. Bash, Raymond S. W. Tsang, Lai-King Ng, and Chao-Ming Tsai
Genetic diversity of three lgt loci for biosynthesis of lipooligosaccharide (LOS) in Neisseria species
Microbiology 2002; 148(6): 1833-1844 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Donald A. MacKenzie, Andrew T. Carter, Prasert Wongwathanarat, John Eagles, Joanne Salt, and David B. Archer
A third fatty acid {Delta}9-desaturase from Mortierella alpina with a different substrate specificity to ole1p and ole2p
Microbiology 2002; 148(6): 1725-1735 [Abstract] [Full Text]  
Article supplement(s): [Supplementary gas chromatogram]

Andreas Tauch, Susanne Schneiker, Werner Selbitschka, Alfred Pühler, Leo S. van Overbeek, Kornelia Smalla, Christopher M. Thomas, Mark J. Bailey, Larry J. Forney, Andrew Weightman, Piotr Ceglowski, Tony Pembroke, Erhard Tietze, Gunnar Schröder, Erich Lanka, and Jan Dirk van Elsas
The complete nucleotide sequence and environmental distribution of the cryptic, conjugative, broad-host-range plasmid pIPO2 isolated from bacteria of the wheat rhizosphere
Microbiology 2002; 148(6): 1637-1653 [Abstract] [Full Text]  
Article supplement(s): [Corrigendum]

Anne-Marie Crutz-Le Coq, Bénédicte Cesselin, Jacqueline Commissaire, and Jamila Anba
Sequence analysis of the lactococcal bacteriophage bIL170: insights into structural proteins and HNH endonucleases in dairy phages
Microbiology 2002; 148(4): 985-1001 [Abstract] [Full Text]  
Article supplement(s): [Corrigendum]

Nicole K. Trepanier, Susan E. Jensen, Dylan C. Alexander, and Brenda K. Leskiw
The positive activator of cephamycin C and clavulanic acid production in Streptomyces clavuligerus is mistranslated in a bldA mutant
Microbiology 2002; 148(3): 643-656 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Kim B. Kingston, Donna M. Allen, and Nicholas A. Jacques
Role of the C-terminal YG repeats of the primer-dependent streptococcal glucosyltransferase, GtfJ, in binding to dextran and mutan
Microbiology 2002; 148(2): 549-558 [Abstract] [Full Text]  
Article supplement(s): [Corrigendum]

Robin A. Skuce, Thomas P. McCorry, Julie F. McCarroll, Solvig M. M. Roring, Alistair N. Scott, David Brittain, Stephen L. Hughes, R. Glyn Hewinson, and Sydney D. Neill
Discrimination of Mycobacterium tuberculosis complex bacteria using novel VNTR-PCR targets
Microbiology 2002; 148(2): 519-528 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Table]

Manuel Espinosa-Urgel, Roberto Kolter, and Juan-Luis Ramos
Root colonization by Pseudomonas putida: love at first sight
Microbiology 2002; 148(2): 341-343 [Full Text]  
Article supplement(s): [Supplemental Movies]

Ana Belén Campelo and José A. Gil
The candicidin gene cluster from Streptomyces griseus IMRU 3570
Microbiology 2002; 148(1): 51-59 [Abstract] [Full Text]  
Article supplement(s): [Corrigendum]

Amit Gupta, Le T. Phung, Diane E. Taylor, and Simon Silver
Diversity of silver resistance genes in IncH incompatibility group plasmids
Microbiology 2001; 147(12): 3393-3402 [Abstract] [Full Text]  
Article supplement(s): [Supplementary alignments]

Thien B. Cao and Milton H. Saier Jr
Conjugal type IV macromolecular transfer systems of Gram-negative bacteria: organismal distribution, structural constraints and evolutionary conclusions
Microbiology 2001; 147(12): 3201-3214 [Full Text]  
Article supplement(s): [Supplementary sequences]

Stephen A. Klotz, Micheal L. Pendrak, and Raymond C. Hein
Antibodies to {alpha}5ß1 and {alpha}vß3 integrins react with Candida albicans alcohol dehydrogenase
Microbiology 2001; 147(11): 3159-3164 [Abstract] [Full Text]  
Article supplement(s): [Supplementary sequence]

Luisa Sandner, Luis E. Eguiarte, Armando Navarro, Alejandro Cravioto, and Valeria Souza
The elements of the locus of enterocyte effacement in human and wild mammal isolates of Escherichia coli: evolution by assemblage or disruption?
Microbiology 2001; 147(11): 3149-3158 [Abstract] [Full Text]  
Article supplement(s): [Supplementary data]

Jan-Ulrich Kreft, Cristian Picioreanu, Julian W. T. Wimpenny, and Mark C. M. van Loosdrecht
Individual-based modelling of biofilms
Microbiology 2001; 147(11): 2897-2912 [Abstract] [Full Text]  
Article supplement(s): [Supplementary images and movies]

Hanne Jarmer, Thomas S. Larsen, Anders Krogh, Hans Henrik Saxild, Søren Brunak, and Steen Knudsen
Sigma A recognition sites in the Bacillus subtilis genome
Microbiology 2001; 147(9): 2417-2424 [Abstract] [Full Text]  
Article supplement(s): [Data Supplement]

Lori A. S. Snyder, Sarah A. Butcher, and Nigel J. Saunders
Comparative whole-genome analyses reveal over 100 putative phase-variable genes in the pathogenic Neisseria spp.
Microbiology 2001; 147(8): 2321-2332 [Abstract] [Full Text]  
Article supplement(s): [Sequences]

Leila de Mendonça-Lima, Mathieu Picardeau, Catherine Raynaud, Jean Rauzier, Yves-Olivier Goguet de la Salmonière, Lucia Barker, Fabiana Bigi, Angel Cataldi, Brigitte Gicquel, and Jean-Marc Reyrat
Erp, an extracellular protein family specific to mycobacteria
Microbiology 2001; 147(8): 2315-2320 [Abstract] [Full Text]  
Article supplement(s): [Erp: alignment and protein features]

David C. Pauling, Jerome P. Lapointe, Carolyn M. Paris, and Robert A. Ludwig
Azorhizobium caulinodans pyruvate dehydrogenase activity is dispensable for aerobic but required for microaerobic growth
Microbiology 2001; 147(8): 2233-2245 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Christian O. Brämer and Alexander Steinbüchel
The methylcitric acid pathway in Ralstonia eutropha: new genes identified involved in propionate metabolism
Microbiology 2001; 147(8): 2203-2214 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figures]

Gisèle Laguerre, Sarah M. Nour, Valérie Macheret, Juan Sanjuan, Pascal Drouin, and Noëlle Amarger
Classification of rhizobia based on nodC and nifH gene analysis reveals a close phylogenetic relationship among Phaseolus vulgaris symbionts
Microbiology 2001; 147(4): 981-993 [Abstract] [Full Text]  
Article supplement(s): [Supplementary table]

Neil H. Mendelson, Joelle E. Sarlls, and John J. Thwaites
Motions caused by the growth of Bacillus subtilis macrofibres in fluid medium result in new forms of movement of the multicellular structures over solid surfaces
Microbiology 2001; 147(4): 929-937 [Abstract] [Full Text]  
Article supplement(s): [Video of macrofibre motions]

Wendy Thai, Ashish S. Paradkar, and Susan E. Jensen
Construction and analysis of ß-lactamase-inhibitory protein (BLIP) non-producer mutants of Streptomyces clavuligerus
Microbiology 2001; 147(2): 325-335 [Abstract] [Full Text]  
Article supplement(s): [Supplementary figure]

N. B. Grover and C. L. Woldringh
Dimensional regulation of cell-cycle events in Escherichia coli during steady-state growth
Microbiology 2001; 147(1): 171-181 [Abstract] [Full Text]  
Article supplement(s): [Supplementary Fig. 1]

Claire Hennequin, Fabrice Porcheray, Anne-Judith Waligora-Dupriet, Anne Collignon, Marie-Claude Barc, Pierre Bourlioux, and Tuomo Karjalainen
GroEL (Hsp60) of Clostridium difficile is involved in cell adherence
Microbiology 2001; 147(1): 87-96 [Abstract] [Full Text]  
Article supplement(s): [Corrigendum]

Tim J. Bull, John Hermon-Taylor, Ivo Pavlik, Fouad El-Zaatari, and Mark Tizard
Characterization of IS900 loci in Mycobacterium avium subsp. paratuberculosis and development of multiplex PCR typing
Microbiology 2000; 146(9): 2185-2197 [Abstract] [Full Text]  
Article supplement(s): [Corrigendum]